mRNA_P-wetherbeei_contig53082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53082.1.1
Unique NamemRNA_P-wetherbeei_contig53082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53082.1.1 vs. uniprot
Match: A0A1Z9UI86_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UI86_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 1.490e-17
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  100 WSVAMHALLAGAVYVGSLGWGLALTYWQVLFVLASASVLQAVPASLLGIGVADVAGTGLYVALGLSLPDALLLVSLLYCYRLLAAVLGGLWE 375
            +S+ MH  LA  ++VGS G G+ + Y  +L VL+ + +LQ+VP S+LG+G  +VAG  +Y A+GL +  ALLLV+LLY YRL+ +V GG+W+
Sbjct:  206 FSIIMHMTLAAGIFVGSHGIGVTIPYLDILLVLSLSMILQSVPVSILGVGATEVAGVAIYTAIGLPITTALLLVALLYTYRLITSVAGGIWQ 297
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BLAST of mRNA_P-wetherbeei_contig53082.1.1 vs. uniprot
Match: A0A4V1URT4_9BURK (Flippase-like domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4V1URT4_9BURK)

HSP 1 Score: 64.7 bits (156), Expect = 1.150e-9
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:   22 RRADLNAGQVLARLLAHKRDAALALAWSVAMHALLAGAVYVGSLGWGLALTYWQVLFVLASASVLQAVPASLLGIGVADVAGTGLYVALGLSLPDALLLVSLLYCYRLLAAVLGGLWE 375
            RR  L   +V+  +LA  R  +L    S+ MH + A  +Y  +  + + +   ++LF +A+ S+L A+P SL G+G ADV    ++VA+G +L  ++LL +L Y  RL+ AV GG+WE
Sbjct:  177 RRVRLAITEVIHAILASWRRVSLIFVLSICMHVVFALGIYCAAQAFLIDIALIEILFAVAAGSLLVAIPVSLGGVGAADVTTVTIFVAMGHTLEQSILLGALPYLARLVGAVQGGVWE 294
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BLAST of mRNA_P-wetherbeei_contig53082.1.1 vs. uniprot
Match: UPI001905652B (hypothetical protein n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001905652B)

HSP 1 Score: 57.0 bits (136), Expect = 6.470e-7
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  103 SVAMHALLAGAVYVGSLGWGLALTYWQVLFVLASASVLQAVPASLLGIGVADVAGTGLYVALGLSLPDALLLVSLLYCYRLLAAVLG 363
            S A +A+LA  ++  +  WG+A+   +VL  L+   + Q +P +L+G+   +VA   +Y+A GLS PDA+LL ++ Y  RL AA++G
Sbjct:  205 SAAAYAVLAAGIWTAAETWGVAIDPTEVLVALSGTLLFQLIPVNLVGVSFGEVAAIAIYMAYGLSRPDAVLLTTVAYLQRLGAALIG 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Z9UI86_9GAMM1.490e-1747.83Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A4V1URT4_9BURK1.150e-936.44Flippase-like domain-containing protein n=1 Tax=Bu... [more]
UPI001905652B6.470e-737.93hypothetical protein n=1 Tax=Rhodovibrio sodomensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53082contigP-wetherbeei_contig53082:106..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size396
Hectar predicted targeting categorysignal anchor
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.9547157-CDS-P-wetherbeei_contig53082:105..5011683186794.9547157-CDS-P-wetherbeei_contig53082:105..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53082 106..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53082.1.1prot_P-wetherbeei_contig53082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53082 106..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53082.1.1

>prot_P-wetherbeei_contig53082.1.1 ID=prot_P-wetherbeei_contig53082.1.1|Name=mRNA_P-wetherbeei_contig53082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
WVLLRTQRRADLNAGQVLARLLAHKRDAALALAWSVAMHALLAGAVYVGS
LGWGLALTYWQVLFVLASASVLQAVPASLLGIGVADVAGTGLYVALGLSL
PDALLLVSLLYCYRLLAAVLGGLWESGKTLE*
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mRNA from alignment at P-wetherbeei_contig53082:106..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53082.1.1 ID=mRNA_P-wetherbeei_contig53082.1.1|Name=mRNA_P-wetherbeei_contig53082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig53082:106..501- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGTTGTTGCGCACGCAGCGCCGCGCAGACCTCAACGCTGGTCAAGT
GCTGGCGCGTCTGCTCGCACATAAGCGCGACGCTGCGCTGGCCCTCGCCT
GGTCGGTAGCGATGCACGCCTTATTGGCCGGCGCGGTCTATGTTGGCAGC
CTGGGCTGGGGCCTTGCCCTCACTTACTGGCAGGTGCTGTTCGTACTCGC
CAGCGCGTCGGTGTTGCAGGCCGTGCCCGCCAGTCTGCTTGGCATTGGCG
TCGCCGACGTCGCTGGCACCGGCTTGTATGTCGCGCTGGGATTATCCTTG
CCGGACGCTTTGCTACTGGTTTCGCTGTTGTACTGCTATCGACTGTTGGC
GGCAGTGTTGGGTGGGCTGTGGGAGTCGGGGAAAACGCTGGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53082:106..501-

>mRNA_P-wetherbeei_contig53082.1.1 ID=mRNA_P-wetherbeei_contig53082.1.1|Name=mRNA_P-wetherbeei_contig53082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig53082:106..501- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGTTGTTGCGCACGCAGCGCCGCGCAGACCTCAACGCTGGTCAAGT
GCTGGCGCGTCTGCTCGCACATAAGCGCGACGCTGCGCTGGCCCTCGCCT
GGTCGGTAGCGATGCACGCCTTATTGGCCGGCGCGGTCTATGTTGGCAGC
CTGGGCTGGGGCCTTGCCCTCACTTACTGGCAGGTGCTGTTCGTACTCGC
CAGCGCGTCGGTGTTGCAGGCCGTGCCCGCCAGTCTGCTTGGCATTGGCG
TCGCCGACGTCGCTGGCACCGGCTTGTATGTCGCGCTGGGATTATCCTTG
CCGGACGCTTTGCTACTGGTTTCGCTGTTGTACTGCTATCGACTGTTGGC
GGCAGTGTTGGGTGGGCTGTGGGAGTCGGGGAAAACGCTGGAATGA
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