mRNA_P-wetherbeei_contig53078.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53078.1.1
Unique NamemRNA_P-wetherbeei_contig53078.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Match: A0A7X7T2N0_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=Holophagae bacterium TaxID=2073116 RepID=A0A7X7T2N0_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-9
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 AAILGLMALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLAGFAMLSGFALREYLNRVDEVP 231
            A +LGL+ ++TL + LL+  RP   ++   DR+KAWW MA VF+    ++ ++SL  FA++S +AL+EY+  +   P
Sbjct:    3 AVVLGLLVVSTLVVWLLRWLRPEGRWDELADRVKAWWVMAAVFLGAVAVHPAVSLVVFALMSFWALKEYVTLLRTRP 79
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BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Match: UPI00080714E1 (phosphatidate cytidylyltransferase n=1 Tax=Kluyvera georgiana TaxID=73098 RepID=UPI00080714E1)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-8
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 AAILGLMALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLAGFAMLSGFALREYLNRVD 222
            AAI  ++ LATL + LL+R++P E +     R++ WW + +    + L    L+LAGFA++SG AL+EYL  V 
Sbjct:    9 AAIFAVLLLATLVMALLRRYKPAEDWRELILRIRTWWIIVIFISGLLLTPYWLALAGFALISGLALKEYLALVS 82
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BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Match: UPI000CFF0912 (phosphatidate cytidylyltransferase n=1 Tax=Erwinia billingiae TaxID=182337 RepID=UPI000CFF0912)

HSP 1 Score: 52.4 bits (124), Expect = 8.110e-6
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:    7 ILGLMALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLAGFAMLSGFALREYLN-----RVDEVPPAVRYS 249
            I  ++ALAT+ L +LK++R    +   + R+ +WW +  VF +  L    L+LA F  LS  +L+EYL      R D VP    Y+
Sbjct:   15 IFSILALATIILFVLKKYRLQHDWLELQQRINSWWIIVGVFSLAMLSPKGLALAFFGFLSFLSLKEYLTLAPTRRSDNVPLLWMYA 100
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BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Match: A0A2V7WPM0_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7WPM0_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.150e-6
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    7 ILGLMALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLAGFAMLSGFALREYLNRVDEVP 231
            ILG++ +AT+   LLK  R     +    R++AWW M+ VF +  L  G  S+  FA+LS FALRE++      P
Sbjct:   17 ILGVLLVATVVGQLLKLRRSNAVIDNLNARIRAWWVMSAVFALSLLTGGIGSVILFALLSFFALREFITLTPTRP 91
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BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Match: A0A7C2J7X0_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2J7X0_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 3.870e-5
Identity = 22/75 (29.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    7 ILGLMALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLAGFAMLSGFALREYLNRVDEVP 231
            +LG++ +A+ A+  ++  +P + +     R++AWW MA +F     ++  +SL  FA+LS +A++EY+  +   P
Sbjct:    5 VLGVLVVASAAVAAIRLAKPAKDFSELSARVRAWWIMAGLFFAAISLSDPVSLVFFALLSFWAVKEYITLLKTRP 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53078.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7X7T2N0_9BACT1.070e-938.96Phosphatidate cytidylyltransferase n=1 Tax=Holopha... [more]
UPI00080714E11.030e-840.54phosphatidate cytidylyltransferase n=1 Tax=Kluyver... [more]
UPI000CFF09128.110e-634.88phosphatidate cytidylyltransferase n=1 Tax=Erwinia... [more]
A0A2V7WPM0_9BACT8.150e-638.67Phosphatidate cytidylyltransferase n=1 Tax=Acidoba... [more]
A0A7C2J7X0_9BACT3.870e-529.33Phosphatidate cytidylyltransferase n=1 Tax=Blastoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53078contigP-wetherbeei_contig53078:223..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1496688.ER33_00555
PFAMsCTP_transf_1
Model size282
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002
KEGG koko:K00981
KEGG ReactionR01799
KEGG Pathwayko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070
KEGG ModuleM00093
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.29e-07
EggNOG OGsCOG4589@1|root,COG4589@2|Bacteria,1GCQF@1117|Cyanobacteria
EC2.7.7.41
DescriptionBelongs to the CDS family
Cds size264
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.8586364-UTR-P-wetherbeei_contig53078:222..2401683186794.8586364-UTR-P-wetherbeei_contig53078:222..240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53078 223..240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.8810122-CDS-P-wetherbeei_contig53078:240..5041683186794.8810122-CDS-P-wetherbeei_contig53078:240..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53078 241..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53078.1.1prot_P-wetherbeei_contig53078.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53078 241..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53078.1.1

>prot_P-wetherbeei_contig53078.1.1 ID=prot_P-wetherbeei_contig53078.1.1|Name=mRNA_P-wetherbeei_contig53078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MALATLALPLLKRFRPPEHYEAFRDRLKAWWTMAVVFVIVNLINGSLSLA
GFAMLSGFALREYLNRVDEVPPAVRYSCYLAVQLKNH*
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mRNA from alignment at P-wetherbeei_contig53078:223..504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53078.1.1 ID=mRNA_P-wetherbeei_contig53078.1.1|Name=mRNA_P-wetherbeei_contig53078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig53078:223..504+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCATCCTGGGCCTGATGGCGCTGGCCACCCTCGCCCTCCCGCTGCT
CAAACGATTCCGCCCACCCGAGCACTATGAAGCGTTCCGCGATCGGCTCA
AGGCCTGGTGGACAATGGCCGTTGTGTTCGTCATCGTGAACCTCATCAAC
GGCTCGCTCTCGCTGGCCGGCTTTGCCATGCTGAGCGGATTCGCTCTGCG
CGAATACCTCAATCGGGTCGACGAAGTCCCCCCGGCGGTCCGCTACTCGT
GCTACCTGGCCGTTCAGCTCAAAAACCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53078:223..504+

>mRNA_P-wetherbeei_contig53078.1.1 ID=mRNA_P-wetherbeei_contig53078.1.1|Name=mRNA_P-wetherbeei_contig53078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig53078:223..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGGCCACCCTCGCCCTCCCGCTGCTCAAACGATTCCGCCCACC
CGAGCACTATGAAGCGTTCCGCGATCGGCTCAAGGCCTGGTGGACAATGG
CCGTTGTGTTCGTCATCGTGAACCTCATCAACGGCTCGCTCTCGCTGGCC
GGCTTTGCCATGCTGAGCGGATTCGCTCTGCGCGAATACCTCAATCGGGT
CGACGAAGTCCCCCCGGCGGTCCGCTACTCGTGCTACCTGGCCGTTCAGC
TCAAAAACCACTGA
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