mRNA_P-wetherbeei_contig53071.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53071.1.1
Unique NamemRNA_P-wetherbeei_contig53071.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7V8WUJ9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WUJ9_9CHLR)

HSP 1 Score: 137 bits (345), Expect = 3.680e-36
Identity = 70/129 (54.26%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    4 DILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            D    DN A L L ++AL  L ++LV D PG LQRAL V+PG RV   PG+TPGLA L+AGYDL VF GV+P  TDLP +PM+F QPQP+   F + GA+  PAI  +    P+LA +DLAG+TFG  P
Sbjct:   77 DAQPRDNHAALVLRQNALLSLDVLLVTDTPGKLQRALEVLPGARVRVEPGTTPGLAELAAGYDLVVFEGVTPALTDLPNVPMVFVQPQPVAEVFAVTGAMPQPAITRVRGEDPLLAQLDLAGLTFGQTP 205          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7W0KEY3_9CHLR (VWA domain-containing protein n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KEY3_9CHLR)

HSP 1 Score: 134 bits (338), Expect = 3.290e-34
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 RDILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            RD    DN AT+ L+      L ++L++DNP AL+RALG +P   VD +P STPG+ AL+ G+DL VF G+SP   D+P +PMLF +P  I   F  QG LAAP+ID +DAG+ +L  VDLAGVTFG+ P
Sbjct:  315 RDSFGGDNGATVLLDGSGSGGLDVLLISDNPAALERALGALPEAAVDVFPTSTPGIRALATGFDLVVFQGISPLPDDIPDVPMLFVRPTQIGERFASQGVLAAPSIDRVDAGAAILDGVDLAGVTFGNAP 444          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7V9VTK7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VTK7_9CHLR)

HSP 1 Score: 128 bits (321), Expect = 2.250e-33
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   64 LAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            L I+L++DNPGA++RALG +P  RVDG+P STPG+ AL+AG+DL VF GV+P   DLP  PMLF +P      F  +G + +PAID IDAG+ +L  VDLAGVTFG  P
Sbjct:    5 LDILLISDNPGAMERALGALPEARVDGFPTSTPGVRALAAGFDLVVFQGVTPPPNDLPEAPMLFVRPMQSGDHFATEGVMTSPAIDRIDAGASILEGVDLAGVTFGDTP 113          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7V9B6K1_9CHLR (VWA domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B6K1_9CHLR)

HSP 1 Score: 106 bits (265), Expect = 2.950e-24
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    4 DILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            D L  D+AA +    D L+ L+++LV+D PGA+QR L V+PGV V+ YP +TPG+  ++AG DL V+ G +P   D+P  PML  QP  +E A+ I G    P +  I     ++ DV L GV FG  P
Sbjct:  300 DALPEDDAAVVSFTGDTLTGLSVVLVSDLPGAVQRVLEVLPGVHVEVYPSTTPGIREIAAGADLVVYDGSAPSPDDVPNAPMLLVQPSDLENAWQIGGVAPNPEVGDIRLDDAIMRDVSLEGVLFGETP 428          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7W0A312_9CHLR (VWA domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A312_9CHLR)

HSP 1 Score: 94.0 bits (232), Expect = 7.530e-20
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    4 DILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            D L  D+ A L L +D+   L I+LV+D PGALQRAL V+PG RV     S    A +  G+DL VF  V+P AT LP   +LF QP P    F  +G + +PA+  + A  P+L  VDLAG+TFG VP
Sbjct:  317 DALPEDDRAALILFQDSSLALEILLVSDLPGALQRALEVLPGARVTAVT-SDQAAARVQGGFDLVVFERVAPPAT-LPDAALLFVQPPP-GSPFPTRGEMVSPAVTGVAADDPLLRGVDLAGLTFGPVP 442          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A7W0TTH6_9CHLR (VWA domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TTH6_9CHLR)

HSP 1 Score: 92.4 bits (228), Expect = 2.950e-19
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    4 DILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            D  Q D+ A L L +++   L I+LV+D P  LQRAL V+PG  V      +P +  +  GYDL V+ G SP    LP   MLF  P      F  +G +  P+   I A   +LADVDLAGVTFG  P
Sbjct:  317 DAFQGDDTAALILRQESTLGLRILLVSDVPSPLQRALEVLPGADVTIEASDSPAVQRVDPGYDLVVYEGTSPPNDVLPDAAMLFVHPAVDTQFFPTEGVMPQPSATVIQANESLLADVDLAGVTFGETP 445          
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Match: A0A6J4UGW6_9CHLR (BatA domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UGW6_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 1.040e-11
Identity = 52/131 (39.69%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    4 DILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYPGSTPGLAALSAGYDLAVFVGVSP--RATDLPAIPMLFFQPQPIEGAFGIQGALAAPAIDTIDAGSPVLADVDLAGVTFGSVP 390
            D   ADN A L L    LS L I+LV+D P  L R L  I G R+   PG      A    +DL V  GV+P     D   +P+L   P P  G     G +  P I+ + +G P+LA VDL+GVTFG  P
Sbjct:  311 DAFAADNRADLPLAAGDLS-LRILLVSDVPSPLARVLAAIEGARLTVEPGERLNDPAGLGNHDLMVLEGVAPVPGVLDELRMPLLIVAP-PDGGPLPTDGVMVEPEIERLRSGDPLLAGVDLSGVTFGESP 439          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7V8WUJ9_9CHLR3.680e-3654.26Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0KEY3_9CHLR3.290e-3451.54VWA domain-containing protein n=2 Tax=Chloroflexia... [more]
A0A7V9VTK7_9CHLR2.250e-3356.88Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V9B6K1_9CHLR2.950e-2442.64VWA domain-containing protein n=1 Tax=Chloroflexia... [more]
A0A7W0A312_9CHLR7.530e-2046.51VWA domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7W0TTH6_9CHLR2.950e-1941.86VWA domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A6J4UGW6_9CHLR1.040e-1139.69BatA domain-containing protein n=1 Tax=uncultured ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53071contigP-wetherbeei_contig53071:152..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.8273735-CDS-P-wetherbeei_contig53071:151..5411683186794.8273735-CDS-P-wetherbeei_contig53071:151..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53071 152..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53071.1.1prot_P-wetherbeei_contig53071.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53071 152..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53071.1.1

>prot_P-wetherbeei_contig53071.1.1 ID=prot_P-wetherbeei_contig53071.1.1|Name=mRNA_P-wetherbeei_contig53071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
RDILQADNAATLHLERDALSQLAIMLVADNPGALQRALGVIPGVRVDGYP
GSTPGLAALSAGYDLAVFVGVSPRATDLPAIPMLFFQPQPIEGAFGIQGA
LAAPAIDTIDAGSPVLADVDLAGVTFGSVP
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mRNA from alignment at P-wetherbeei_contig53071:152..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53071.1.1 ID=mRNA_P-wetherbeei_contig53071.1.1|Name=mRNA_P-wetherbeei_contig53071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig53071:152..541- (Phaeothamnion wetherbeei SAG_119_79)
CGCGATATCCTGCAGGCGGACAACGCCGCCACGCTTCACCTCGAACGCGA TGCCCTCAGCCAGCTCGCCATCATGCTGGTGGCGGACAACCCCGGTGCGC TGCAACGCGCCCTCGGCGTGATCCCCGGCGTGCGCGTCGATGGCTATCCG GGCAGCACGCCGGGGCTGGCCGCGCTCTCGGCGGGATACGATCTCGCCGT CTTCGTCGGCGTCTCGCCCCGCGCGACCGACCTGCCGGCAATCCCGATGC TCTTCTTCCAGCCCCAGCCGATCGAGGGCGCCTTCGGCATCCAGGGCGCG CTGGCGGCGCCCGCGATCGATACCATCGACGCCGGATCGCCGGTGCTCGC CGATGTCGACCTCGCCGGCGTCACCTTCGGCAGCGTCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53071:152..541-

>mRNA_P-wetherbeei_contig53071.1.1 ID=mRNA_P-wetherbeei_contig53071.1.1|Name=mRNA_P-wetherbeei_contig53071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig53071:152..541- (Phaeothamnion wetherbeei SAG_119_79)
CGCGATATCCTGCAGGCGGACAACGCCGCCACGCTTCACCTCGAACGCGA
TGCCCTCAGCCAGCTCGCCATCATGCTGGTGGCGGACAACCCCGGTGCGC
TGCAACGCGCCCTCGGCGTGATCCCCGGCGTGCGCGTCGATGGCTATCCG
GGCAGCACGCCGGGGCTGGCCGCGCTCTCGGCGGGATACGATCTCGCCGT
CTTCGTCGGCGTCTCGCCCCGCGCGACCGACCTGCCGGCAATCCCGATGC
TCTTCTTCCAGCCCCAGCCGATCGAGGGCGCCTTCGGCATCCAGGGCGCG
CTGGCGGCGCCCGCGATCGATACCATCGACGCCGGATCGCCGGTGCTCGC
CGATGTCGACCTCGCCGGCGTCACCTTCGGCAGCGTCCCG
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