mRNA_P-wetherbeei_contig53066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53066.1.1
Unique NamemRNA_P-wetherbeei_contig53066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A537SC66_9PROT (Extradiol ring-cleavage dioxygenase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SC66_9PROT)

HSP 1 Score: 193 bits (491), Expect = 3.460e-61
Identity = 89/125 (71.20%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MA+IV GFGVPHTP+FP FVKRDGPDCETA+LF AQK  LAA RP++IVMFDTDHLNTFFLD+LPIFA+G+D  FKAPNDEP+++P Y VPS  D+AAHIR   V AGFD+ + Q +SVDHS+ V
Sbjct:    1 MAQIVAGFGVPHTPIFPHFVKRDGPDCETAKLFGAQKAQLAAERPNLIVMFDTDHLNTFFLDSLPIFAVGIDTRFKAPNDEPQDVPNYIVPSMLDVAAHIRCAVVAAGFDVGMTQNYSVDHSVTV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A6L5FH39_9HYPH (Extradiol ring-cleavage dioxygenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FH39_9HYPH)

HSP 1 Score: 178 bits (451), Expect = 1.470e-53
Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MAEIV GFGVPHTPVFP+FV+RDGPDCE A LF    E L   RPD+IVMFDTDH+NTFFLDNLPIFA+GV   F  PNDE R +PV TV S  D+AAH+R   V AGFDL L+Q+FSVDHS+ V
Sbjct:    1 MAEIVAGFGVPHTPVFPFFVERDGPDCEIAVLFRKLTEHLEEIRPDLIVMFDTDHMNTFFLDNLPIFAVGVGDDFTGPNDEVRSVPVQTVKSRGDVAAHLRNVGVHAGFDLGLLQEFSVDHSVFV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A2V7DKH3_9BACT (Extradiol ring-cleavage dioxygenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7DKH3_9BACT)

HSP 1 Score: 150 bits (378), Expect = 1.450e-42
Identity = 72/125 (57.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            M EIV GFGVPHTP+FP  VKRDGP CETA+L+ A    L A +PD +V+FD+DHLNTFFLDN P  +IGV      PND   E+P YTVP + DLA  + +  +++GFDL+L Q+F VDHSI V
Sbjct:    1 MGEIVAGFGVPHTPMFPALVKRDGPQCETAQLYRAVAGHLDAIKPDALVVFDSDHLNTFFLDNYPNLSIGVTDQTTGPNDGTPELPPYTVPVSEDLAGRLYSFGLQSGFDLSLAQEFDVDHSILV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A536PTQ8_9CHLR (Extradiol ring-cleavage dioxygenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536PTQ8_9CHLR)

HSP 1 Score: 138 bits (347), Expect = 6.540e-38
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MAE+VGG GVPH P FP  V R+GP  + A  F     +L A RPD +V+F  DH+NTFFLDNLP+F++GV      PND    +P Y VP A  LAAH+R   + AGFDLAL Q+F+VDHS+ V
Sbjct:   15 MAELVGGVGVPHDPGFPELVAREGPRSDVATRFGEIAAELEAMRPDALVVFTADHMNTFFLDNLPLFSVGVADRTTGPNDGTPALPRYDVPFAEGLAAHVRDRGIAAGFDLALTQEFAVDHSVLV 139          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A1Q7QIT4_9CHLR (LigB domain-containing protein n=5 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1Q7QIT4_9CHLR)

HSP 1 Score: 137 bits (344), Expect = 4.290e-37
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MAE+VGG GVPH P FP  V R+GP  + A  F     +L + RPD +V+F  DH+NTFFLDNLP+F++GV      PND    +P Y VP A  LAAH+R   + AGFDLAL Q+F+VDHS+ V
Sbjct:   37 MAELVGGVGVPHDPGFPELVAREGPRSDVATRFGEIAAELESMRPDALVVFTADHMNTFFLDNLPLFSVGVADRTTGPNDGTPALPRYDVPVAEGLAAHVRDRGIAAGFDLALTQEFAVDHSVLV 161          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A542AG62_9HYPH (Protocatechuate 4,5-dioxygenase beta subunit n=1 Tax=Bosea sp. AK1 TaxID=2587160 RepID=A0A542AG62_9HYPH)

HSP 1 Score: 135 bits (341), Expect = 4.940e-37
Identity = 70/125 (56.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MA I  G G+PH P  P  V R+GP  ET +LF+  +E +AA   DVIV F TDHLNTFF DNLPIF IGV   F  PNDE   +PV  V S   LA H+R  A+  GFD ALVQ+FSVDHS +V
Sbjct:    1 MASITAGIGLPHVPFLPALVLREGPTSETGQLFAQVREAMAAVPIDVIVEFSTDHLNTFFFDNLPIFGIGVADRFAGPNDEVEAVPVSEVRSDRALAEHLRKAAISDGFDTALVQEFSVDHSFSV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: F2IZI2_POLGS (Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) TaxID=991905 RepID=F2IZI2_POLGS)

HSP 1 Score: 119 bits (297), Expect = 1.990e-30
Identity = 60/125 (48.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MA IVGG GVPHTP FP F  ++G + E    F   + DL A RPDVI+M DTDH NTF+ D  P FA+GVD  F  P D+   MP   + S   LA H+    +   FD ALV  F V HS+ V
Sbjct:    1 MARIVGGIGVPHTPYFPRFAAQEGSNGEINTFFGKVRADLEAHRPDVILMIDTDHFNTFYFDTYPTFAVGVDHGFYGPVDDVALMPPRVIRSHKTLALHLHRELIARDFDSALVTNFKVGHSVCV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: G4RAM4_PELHB (Protocatechuate 4,5-dioxygenase beta chain n=1 Tax=Pelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2) TaxID=1082931 RepID=G4RAM4_PELHB)

HSP 1 Score: 119 bits (297), Expect = 2.080e-30
Identity = 59/125 (47.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MA I GG GVPHTP FP F   +GP+ E    F+  +  + A RPDV+++ DTDH NTF+ DN P FA+GVD SF  P D+   MP   + S   LA H+ T  V A FD A V  F + HS  V
Sbjct:    1 MARITGGIGVPHTPYFPKFAAAEGPEGEINSFFAPIRARIEAHRPDVLIVIDTDHFNTFYFDNFPTFAVGVDDSFYGPIDDVALMPPRDIGSDRALARHLHTALVRAEFDPAFVTNFKIGHSTCV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A6N1VFP6_9HYPH (Extradiol ring-cleavage dioxygenase n=1 Tax=Oricola thermophila TaxID=2742145 RepID=A0A6N1VFP6_9HYPH)

HSP 1 Score: 115 bits (289), Expect = 3.220e-29
Identity = 61/125 (48.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            MA I GG GVPHTP FP F   +GPD E  R F   + +L    PDVIV+ DTDH NTF+ DN P FAIG D +F  P D+   MP   + S   LA H+    V   FD ALV  + V HSI V
Sbjct:    1 MATIAGGIGVPHTPYFPRFAAAEGPDGEINRQFGKVRAELQRHDPDVIVIVDTDHFNTFYFDNFPTFAIGCDHTFYGPVDDVALMPPRDIGSNKALALHLHRRLVAQEFDTALVTNYRVGHSIGV 125          
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Match: A0A6L5FEP8_9HYPH (Extradiol ring-cleavage dioxygenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FEP8_9HYPH)

HSP 1 Score: 115 bits (287), Expect = 6.110e-29
Identity = 63/125 (50.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVMFDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHIRTTAVEAGFDLALVQKFSVDHSIAV 375
            M EIV GFGV H+P  P  V++ G      RL+    E + A +PDV+++FD DH +TFFLDN PIFAIGV      PND    MP Y +     LAAHI    V AGFDL L+Q F VDHSI V
Sbjct:    1 MGEIVAGFGVSHSPHAPEQVRKAGASHPLLRLYGRVTEAVEAVKPDVLIVFDCDHFSTFFLDNWPIFAIGVADRIAGPNDG-TVMPRYELKGHAALAAHIHRHCVTAGFDLTLLQDFEVDHSILV 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537SC66_9PROT3.460e-6171.20Extradiol ring-cleavage dioxygenase (Fragment) n=1... [more]
A0A6L5FH39_9HYPH1.470e-5368.80Extradiol ring-cleavage dioxygenase n=1 Tax=Hyphom... [more]
A0A2V7DKH3_9BACT1.450e-4257.60Extradiol ring-cleavage dioxygenase n=1 Tax=Candid... [more]
A0A536PTQ8_9CHLR6.540e-3853.60Extradiol ring-cleavage dioxygenase n=1 Tax=Chloro... [more]
A0A1Q7QIT4_9CHLR4.290e-3752.80LigB domain-containing protein n=5 Tax=unclassifie... [more]
A0A542AG62_9HYPH4.940e-3756.00Protocatechuate 4,5-dioxygenase beta subunit n=1 T... [more]
F2IZI2_POLGS1.990e-3048.00Extradiol ring-cleavage dioxygenase class III prot... [more]
G4RAM4_PELHB2.080e-3047.20Protocatechuate 4,5-dioxygenase beta chain n=1 Tax... [more]
A0A6N1VFP6_9HYPH3.220e-2948.80Extradiol ring-cleavage dioxygenase n=1 Tax=Oricol... [more]
A0A6L5FEP8_9HYPH6.110e-2950.40Extradiol ring-cleavage dioxygenase n=1 Tax=Hyphom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53066contigP-wetherbeei_contig53066:166..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1082931.KKY_2539
PFAMsLigB
Model size375
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00233,RC00387,RC00535,RC01140,RC01364,RC02567,RC02694
KEGG koko:K04101,ko:K05713
KEGG ReactionR01632,R03550,R04280,R04376,R06788,R09565
KEGG Pathwayko00360,ko00362,ko00624,ko00627,ko01120,ko01220,map00360,map00362,map00624,map00627,map01120,map01220
KEGG ModuleM00545
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.4e-31
EggNOG OGsCOG3384@1|root,COG3384@2|Bacteria,1MW77@1224|Proteobacteria,2TRP1@28211|Alphaproteobacteria,3N93B@45401|Hyphomicrobiaceae
EC1.13.11.16,1.13.11.8
DescriptionCatalytic LigB subunit of aromatic ring-opening dioxygenase
Cds size375
COG categoryS
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.6748261-CDS-P-wetherbeei_contig53066:165..5401683186794.6748261-CDS-P-wetherbeei_contig53066:165..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53066 166..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53066.1.1prot_P-wetherbeei_contig53066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53066 166..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53066.1.1

>prot_P-wetherbeei_contig53066.1.1 ID=prot_P-wetherbeei_contig53066.1.1|Name=mRNA_P-wetherbeei_contig53066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MAEIVGGFGVPHTPVFPWFVKRDGPDCETARLFSAQKEDLAATRPDVIVM
FDTDHLNTFFLDNLPIFAIGVDKSFKAPNDEPREMPVYTVPSAPDLAAHI
RTTAVEAGFDLALVQKFSVDHSIAV
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mRNA from alignment at P-wetherbeei_contig53066:166..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53066.1.1 ID=mRNA_P-wetherbeei_contig53066.1.1|Name=mRNA_P-wetherbeei_contig53066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig53066:166..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGATCGTAGGCGGGTTCGGCGTGCCGCACACGCCGGTATTCCC GTGGTTCGTGAAGCGCGATGGCCCGGATTGCGAAACCGCCCGGCTGTTCT CGGCCCAGAAGGAAGACCTCGCCGCGACCCGGCCCGACGTCATCGTGATG TTCGATACCGACCATCTCAATACGTTTTTCCTCGACAACCTCCCGATTTT TGCGATCGGCGTCGACAAGAGCTTCAAGGCGCCGAACGACGAACCGCGCG AGATGCCGGTCTACACCGTTCCCTCCGCGCCCGACCTCGCCGCTCATATC AGGACGACTGCGGTCGAAGCAGGCTTCGATCTGGCCCTGGTGCAGAAATT CTCGGTCGATCACTCGATTGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53066:166..540+

>mRNA_P-wetherbeei_contig53066.1.1 ID=mRNA_P-wetherbeei_contig53066.1.1|Name=mRNA_P-wetherbeei_contig53066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig53066:166..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGATCGTAGGCGGGTTCGGCGTGCCGCACACGCCGGTATTCCC
GTGGTTCGTGAAGCGCGATGGCCCGGATTGCGAAACCGCCCGGCTGTTCT
CGGCCCAGAAGGAAGACCTCGCCGCGACCCGGCCCGACGTCATCGTGATG
TTCGATACCGACCATCTCAATACGTTTTTCCTCGACAACCTCCCGATTTT
TGCGATCGGCGTCGACAAGAGCTTCAAGGCGCCGAACGACGAACCGCGCG
AGATGCCGGTCTACACCGTTCCCTCCGCGCCCGACCTCGCCGCTCATATC
AGGACGACTGCGGTCGAAGCAGGCTTCGATCTGGCCCTGGTGCAGAAATT
CTCGGTCGATCACTCGATTGCGGTG
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