mRNA_P-wetherbeei_contig5301.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5301.1.1
Unique NamemRNA_P-wetherbeei_contig5301.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5301contigP-wetherbeei_contig5301:642..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1221
Hectar predicted targeting categoryother localisation
Exons3
Cds size1209
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.2793117-UTR-P-wetherbeei_contig5301:641..6521683186794.2793117-UTR-P-wetherbeei_contig5301:641..652Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5301 642..652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.2883823-CDS-P-wetherbeei_contig5301:652..11861683186794.2883823-CDS-P-wetherbeei_contig5301:652..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5301 653..1186 +
1683186794.2964122-CDS-P-wetherbeei_contig5301:1393..18861683186794.2964122-CDS-P-wetherbeei_contig5301:1393..1886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5301 1394..1886 +
1683186794.304762-CDS-P-wetherbeei_contig5301:2096..22781683186794.304762-CDS-P-wetherbeei_contig5301:2096..2278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5301 2097..2278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5301.1.1prot_P-wetherbeei_contig5301.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5301 653..2278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5301.1.1

>prot_P-wetherbeei_contig5301.1.1 ID=prot_P-wetherbeei_contig5301.1.1|Name=mRNA_P-wetherbeei_contig5301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=403bp
MRAAATMQQSRAKGPSDQSRKILLSGKMDEIVFSLEPRSFCRCASAIRID
FLAPKRASAWRDFFAFPSCPVFCRAPMVVQRFGPLTHAATSVSQSSESQL
GAVPAAAARRESPPPSGASMSWDRTSDGASHSAPPQPSVALPPFQQRLEG
QGPPPQQGIASALPPPPRWTAARQKALQAPAAAPGISSPAAWLPPPPPQQ
PSPPLQPQQPQLVQLLHREGGYPLLSHLPAQPRSQYTERPASFPMERSHN
PPSEVAALGAGAMVVPPPLLPPPTAATVRRWTPPTSAPPPPPQYQGAPLQ
QPPSQQQQQHQYQLQQQQQRLPPPPPPPPSVYQPGVLGQKAGSHSSGAVV
PGAPVAAGGPSVALHTAGVARDKTVPELVDAFMRGSAAAPPQPPPRFEAP
LPA
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mRNA from alignment at P-wetherbeei_contig5301:642..2278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5301.1.1 ID=mRNA_P-wetherbeei_contig5301.1.1|Name=mRNA_P-wetherbeei_contig5301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-wetherbeei_contig5301:642..2278+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCAAAAGATGAGAGCGGCAGCCACTATGCAGCAATCTCGCGCGAAG
GGCCCCTCCGATCAATCTCGCAAGATCCTCCTTTCGGGTAAGATGGACGA
GATCGTGTTCTCTTTAGAACCGCGAAGCTTCTGCCGCTGTGCGAGTGCGA
TTCGGATCGATTTTTTAGCCCCGAAAAGAGCTTCTGCTTGGCGAGACTTT
TTTGCTTTTCCCTCTTGTCCCGTTTTCTGCAGGGCGCCGATGGTGGTGCA
GCGGTTTGGGCCGCTCACCCACGCCGCGACGAGCGTCTCTCAGTCGTCAG
AAAGTCAGCTAGGAGCGGTCCCAGCGGCGGCGGCGCGTCGGGAGAGCCCG
CCTCCTTCGGGGGCCTCGATGAGCTGGGATCGGACGTCGGACGGAGCATC
GCATTCTGCTCCGCCGCAGCCATCAGTCGCTTTGCCGCCGTTTCAGCAGC
GCCTGGAGGGCCAAGGCCCGCCACCGCAGCAGGGGATTGCGTCGGCGCTG
CCGCCGCCACCGCGATGGACCGCTGCCAGGCAGAAGGCATTGCAGGTGCT
GCCACCTTCGACGGCAGCGTTGCAGCATCTTTCGAGTGGCGTGGAAAAGT
GACGAAACTGTTTTTCCTGATGGTTACATCGGGCTTTTTTGTAGATCAAA
TCGTTGGCCTGGTGACCTCTTGGAGAAGTGGGATTACAGGAGTCTTTGAA
CGCCTAATGAATCGTCTCACTGGATTCTGTCTCTCTCTTGCGGCAACGAC
AGGCTCCAGCGGCGGCTCCAGGGATCAGTTCGCCGGCTGCATGGCTGCCT
CCACCGCCGCCGCAGCAACCGTCTCCGCCGCTGCAGCCCCAGCAGCCGCA
GCTGGTACAACTGCTGCACCGGGAGGGGGGCTATCCCCTGCTGTCCCATC
TGCCCGCGCAGCCACGGTCGCAGTATACGGAGCGGCCCGCGTCGTTTCCG
ATGGAGCGGTCGCACAATCCACCATCCGAGGTGGCGGCGTTGGGGGCCGG
GGCAATGGTGGTTCCGCCTCCGCTGCTGCCGCCGCCCACCGCGGCGACCG
TCCGGCGATGGACACCGCCGACAAGCGCGCCGCCGCCGCCGCCGCAGTAT
CAGGGCGCACCACTGCAGCAGCCGCCGTCGCAGCAACAACAGCAGCACCA
ATATCAGCTCCAGCAGCAGCAACAACGGCTGCCGCCGCCGCCGCCGCCAC
CACCGTCGGTCTATCAACCTGGCGTGTTGGGCCAGAAGGCTGGATGTGAG
TTTCAACGCAGTTATGCCACGGAAAAGAAGAAAATATTTCACTTGGGGAG
TGTCTGAGAAGAGATCGGGGGCCGAAAGTCTTCAGATCGGCGAAATTGAA
CCTGAGTATGCTTATATTTGCCTCTATGGCTCTCTTTCTATGCTCCATGT
TCGCTAACGTGCAACAAAGCACGTATTTTTGCACTTCGCTTTTTCGCACT
GGCAGCACACAGCTCCGGCGCCGTTGTCCCGGGCGCGCCAGTCGCTGCCG
GCGGCCCGTCGGTGGCGTTGCACACGGCGGGCGTGGCGCGCGACAAGACG
GTGCCGGAGCTCGTGGACGCCTTCATGCGGGGCTCCGCTGCCGCACCACC
GCAGCCGCCGCCGCGGTTTGAGGCGCCACTGCCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5301:642..2278+

>mRNA_P-wetherbeei_contig5301.1.1 ID=mRNA_P-wetherbeei_contig5301.1.1|Name=mRNA_P-wetherbeei_contig5301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1209bp|location=Sequence derived from alignment at P-wetherbeei_contig5301:642..2278+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGCGGCAGCCACTATGCAGCAATCTCGCGCGAAGGGCCCCTCCGA
TCAATCTCGCAAGATCCTCCTTTCGGGTAAGATGGACGAGATCGTGTTCT
CTTTAGAACCGCGAAGCTTCTGCCGCTGTGCGAGTGCGATTCGGATCGAT
TTTTTAGCCCCGAAAAGAGCTTCTGCTTGGCGAGACTTTTTTGCTTTTCC
CTCTTGTCCCGTTTTCTGCAGGGCGCCGATGGTGGTGCAGCGGTTTGGGC
CGCTCACCCACGCCGCGACGAGCGTCTCTCAGTCGTCAGAAAGTCAGCTA
GGAGCGGTCCCAGCGGCGGCGGCGCGTCGGGAGAGCCCGCCTCCTTCGGG
GGCCTCGATGAGCTGGGATCGGACGTCGGACGGAGCATCGCATTCTGCTC
CGCCGCAGCCATCAGTCGCTTTGCCGCCGTTTCAGCAGCGCCTGGAGGGC
CAAGGCCCGCCACCGCAGCAGGGGATTGCGTCGGCGCTGCCGCCGCCACC
GCGATGGACCGCTGCCAGGCAGAAGGCATTGCAGGCTCCAGCGGCGGCTC
CAGGGATCAGTTCGCCGGCTGCATGGCTGCCTCCACCGCCGCCGCAGCAA
CCGTCTCCGCCGCTGCAGCCCCAGCAGCCGCAGCTGGTACAACTGCTGCA
CCGGGAGGGGGGCTATCCCCTGCTGTCCCATCTGCCCGCGCAGCCACGGT
CGCAGTATACGGAGCGGCCCGCGTCGTTTCCGATGGAGCGGTCGCACAAT
CCACCATCCGAGGTGGCGGCGTTGGGGGCCGGGGCAATGGTGGTTCCGCC
TCCGCTGCTGCCGCCGCCCACCGCGGCGACCGTCCGGCGATGGACACCGC
CGACAAGCGCGCCGCCGCCGCCGCCGCAGTATCAGGGCGCACCACTGCAG
CAGCCGCCGTCGCAGCAACAACAGCAGCACCAATATCAGCTCCAGCAGCA
GCAACAACGGCTGCCGCCGCCGCCGCCGCCACCACCGTCGGTCTATCAAC
CTGGCGTGTTGGGCCAGAAGGCTGGATCACACAGCTCCGGCGCCGTTGTC
CCGGGCGCGCCAGTCGCTGCCGGCGGCCCGTCGGTGGCGTTGCACACGGC
GGGCGTGGCGCGCGACAAGACGGTGCCGGAGCTCGTGGACGCCTTCATGC
GGGGCTCCGCTGCCGCACCACCGCAGCCGCCGCCGCGGTTTGAGGCGCCA
CTGCCGGCC
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