mRNA_P-wetherbeei_contig53007.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53007.1.1
Unique NamemRNA_P-wetherbeei_contig53007.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53007.1.1 vs. uniprot
Match: A0A7X9Q0Z3_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q0Z3_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 2.660e-9
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   16 TVWRLSADWGYPVPPKS----RTRCLCSACRAHAANKIYLSRDEAIAGRIHPCCVCQPYSIQL 192
            T+WRL+ DWG P+   S    +TRC   AC   A ++ +LS+ +A+AGR+H CC+ QP  + L
Sbjct:   37 TLWRLNPDWGTPLTTPSGSATKTRCSGRACHLAAPHRFFLSQADALAGRLHSCCLAQPVPVTL 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9Q0Z3_9ACTN2.660e-942.86Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53007contigP-wetherbeei_contig53007:6..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.2436428-CDS-P-wetherbeei_contig53007:5..4071683186794.2436428-CDS-P-wetherbeei_contig53007:5..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53007 6..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53007.1.1prot_P-wetherbeei_contig53007.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53007 6..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53007.1.1

>prot_P-wetherbeei_contig53007.1.1 ID=prot_P-wetherbeei_contig53007.1.1|Name=mRNA_P-wetherbeei_contig53007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
DPEFATVWRLSADWGYPVPPKSRTRCLCSACRAHAANKIYLSRDEAIAGR
IHPCCVCQPYSIQLLTTDVAVLAALTTAGSADLRRGPVRTAFEGAVARAQ
EPPPPPPPPPIEAEAPTTTAPTTTAPTTTAPTTT
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mRNA from alignment at P-wetherbeei_contig53007:6..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53007.1.1 ID=mRNA_P-wetherbeei_contig53007.1.1|Name=mRNA_P-wetherbeei_contig53007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig53007:6..407+ (Phaeothamnion wetherbeei SAG_119_79)
GACCCGGAGTTCGCCACGGTGTGGCGTCTGTCGGCCGACTGGGGCTACCC
GGTTCCACCGAAGAGCCGAACCCGGTGCCTGTGCAGCGCGTGCCGCGCCC
ATGCCGCCAACAAGATCTACTTGAGCCGCGACGAGGCGATCGCCGGACGG
ATCCATCCGTGCTGCGTCTGCCAGCCCTACAGCATCCAACTGCTGACCAC
CGACGTCGCGGTGCTGGCCGCGTTGACGACCGCTGGATCAGCCGACCTGC
GCAGGGGTCCGGTCCGCACCGCCTTCGAGGGCGCGGTCGCCCGCGCCCAG
GAACCACCTCCGCCGCCGCCCCCGCCGCCGATCGAGGCGGAAGCACCGAC
GACCACCGCGCCCACGACCACCGCGCCGACGACCACCGCGCCGACGACCA
CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53007:6..407+

>mRNA_P-wetherbeei_contig53007.1.1 ID=mRNA_P-wetherbeei_contig53007.1.1|Name=mRNA_P-wetherbeei_contig53007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig53007:6..407+ (Phaeothamnion wetherbeei SAG_119_79)
GACCCGGAGTTCGCCACGGTGTGGCGTCTGTCGGCCGACTGGGGCTACCC
GGTTCCACCGAAGAGCCGAACCCGGTGCCTGTGCAGCGCGTGCCGCGCCC
ATGCCGCCAACAAGATCTACTTGAGCCGCGACGAGGCGATCGCCGGACGG
ATCCATCCGTGCTGCGTCTGCCAGCCCTACAGCATCCAACTGCTGACCAC
CGACGTCGCGGTGCTGGCCGCGTTGACGACCGCTGGATCAGCCGACCTGC
GCAGGGGTCCGGTCCGCACCGCCTTCGAGGGCGCGGTCGCCCGCGCCCAG
GAACCACCTCCGCCGCCGCCCCCGCCGCCGATCGAGGCGGAAGCACCGAC
GACCACCGCGCCCACGACCACCGCGCCGACGACCACCGCGCCGACGACCA
CG
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