mRNA_P-wetherbeei_contig53003.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53003.1.1
Unique NamemRNA_P-wetherbeei_contig53003.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53003contigP-wetherbeei_contig53003:110..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size426
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.1515448-CDS-P-wetherbeei_contig53003:109..5261683186794.1515448-CDS-P-wetherbeei_contig53003:109..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53003 110..526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.1617846-UTR-P-wetherbeei_contig53003:526..5351683186794.1617846-UTR-P-wetherbeei_contig53003:526..535Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53003 527..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53003.1.1prot_P-wetherbeei_contig53003.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53003 110..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53003.1.1

>prot_P-wetherbeei_contig53003.1.1 ID=prot_P-wetherbeei_contig53003.1.1|Name=mRNA_P-wetherbeei_contig53003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MMAKAMGQPSDTPGAKALEAEFKRKSLGILRIDDGLRVVRVSSSAPAADR
FKLPAAPTAMPAMPAGFEGLLGGARGGGGAAAAADAADAAEAESGVVNDK
VERQKERVKSRADREVDEATDRSVDKVLDKAFDKLFGR*
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mRNA from alignment at P-wetherbeei_contig53003:110..535-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53003.1.1 ID=mRNA_P-wetherbeei_contig53003.1.1|Name=mRNA_P-wetherbeei_contig53003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig53003:110..535- (Phaeothamnion wetherbeei SAG_119_79)
TTCTCGGAAATGATGGCCAAGGCCATGGGCCAGCCTTCCGACACGCCAGG
TGCCAAAGCGCTGGAAGCGGAGTTCAAGCGCAAGAGCCTCGGCATCTTGC
GTATCGATGACGGCCTGCGCGTGGTCCGGGTCAGCAGCAGCGCACCGGCC
GCCGATCGCTTCAAGCTTCCGGCCGCGCCAACGGCGATGCCGGCCATGCC
GGCGGGCTTCGAAGGCCTGCTGGGTGGTGCGAGGGGTGGTGGTGGCGCTG
CGGCGGCTGCCGACGCCGCTGACGCTGCCGAAGCCGAAAGTGGTGTGGTC
AACGACAAGGTCGAGCGGCAGAAGGAGCGAGTGAAGTCCCGCGCTGACCG
GGAAGTCGATGAAGCCACCGATCGCAGCGTCGACAAGGTGCTCGACAAGG
CCTTCGACAAGCTGTTCGGTCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53003:110..535-

>mRNA_P-wetherbeei_contig53003.1.1 ID=mRNA_P-wetherbeei_contig53003.1.1|Name=mRNA_P-wetherbeei_contig53003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig53003:110..535- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCCAAGGCCATGGGCCAGCCTTCCGACACGCCAGGTGCCAAAGC
GCTGGAAGCGGAGTTCAAGCGCAAGAGCCTCGGCATCTTGCGTATCGATG
ACGGCCTGCGCGTGGTCCGGGTCAGCAGCAGCGCACCGGCCGCCGATCGC
TTCAAGCTTCCGGCCGCGCCAACGGCGATGCCGGCCATGCCGGCGGGCTT
CGAAGGCCTGCTGGGTGGTGCGAGGGGTGGTGGTGGCGCTGCGGCGGCTG
CCGACGCCGCTGACGCTGCCGAAGCCGAAAGTGGTGTGGTCAACGACAAG
GTCGAGCGGCAGAAGGAGCGAGTGAAGTCCCGCGCTGACCGGGAAGTCGA
TGAAGCCACCGATCGCAGCGTCGACAAGGTGCTCGACAAGGCCTTCGACA
AGCTGTTCGGTCGCTGA
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