mRNA_P-wetherbeei_contig5300.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5300.4.1
Unique NamemRNA_P-wetherbeei_contig5300.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5300.4.1 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 8.270e-35
Identity = 91/223 (40.81%), Postives = 132/223 (59.19%), Query Frame = 1 
Query:    7 RRRRAAVLRLLGWRHRREQRAAAVALRRWGLDPLEFTLSAAAQRADLAADFRRTMEDFQAAADAWRGGRWDSYRRGVVLRSRALFALEQCRAKKRDTVLIADRSHPDCGLTGRVLAVDCTVPGQEMAEIKLDGQGGRIAFVRVLTDVQNGGEVAEPRTIAVPAMDSVQYANADLQRVRLAVLAWAARERETWVPYAAARQLQRTVRGFLARRATARRRHRLWS 675
            R+R+A  LRL+G R+RR QR A   LR+ G D + FT +   QR DL    +   ++ Q   +A+R    D+YRR   +R++ L  LE+ R ++ D V I +R H  CG TGRVL VD   PG+E+AE+K+D    R+ FVR+L+      ++     + +   +   +   +L  VR A+LAWA RERE W    AA  +QR +RGF+ARR+TARRR+R W+
Sbjct: 1447 RQRQALFLRLVGLRNRRSQRPAIRLLRKVGADLMGFTTAIRIQRKDLRKGAQLAWQELQTHREAFRTCGRDAYRRRNFVRAQQLEDLERKRIRRGDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLLSHEVGSEDIPVVNMLKINRQELRHHEPEELALVRDALLAWADREREKWRTQLAAVAIQRRIRGFIARRSTARRRYRHWT 1669
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5300.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA7_ECTSI8.270e-3540.81Hypothetical leucine rich repeat and MORN domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5300contigP-wetherbeei_contig5300:1299..1977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQA7
Preferred nameFBXO39
PFAMsF-box-like,IQ,LRR_6,MORN
Model size679
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categorymitochondrion
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
Evalue1.36e-35
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
EC2.7.4.3
DescriptionF-box LRR-repeat protein
Cds size678
COG categoryB
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.0643296-CDS-P-wetherbeei_contig5300:1299..19771683186794.0643296-CDS-P-wetherbeei_contig5300:1299..1977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5300 1300..1977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5300.4.1prot_P-wetherbeei_contig5300.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5300 1300..1977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5300.4.1

>prot_P-wetherbeei_contig5300.4.1 ID=prot_P-wetherbeei_contig5300.4.1|Name=mRNA_P-wetherbeei_contig5300.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
ATRRRRAAVLRLLGWRHRREQRAAAVALRRWGLDPLEFTLSAAAQRADLA
ADFRRTMEDFQAAADAWRGGRWDSYRRGVVLRSRALFALEQCRAKKRDTV
LIADRSHPDCGLTGRVLAVDCTVPGQEMAEIKLDGQGGRIAFVRVLTDVQ
NGGEVAEPRTIAVPAMDSVQYANADLQRVRLAVLAWAARERETWVPYAAA
RQLQRTVRGFLARRATARRRHRLWSE
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mRNA from alignment at P-wetherbeei_contig5300:1299..1977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5300.4.1 ID=mRNA_P-wetherbeei_contig5300.4.1|Name=mRNA_P-wetherbeei_contig5300.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=679bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:1299..1977- (Phaeothamnion wetherbeei SAG_119_79)
GCCACGCGCCGGCGGCGGGCGGCCGTCCTCCGGCTGCTGGGCTGGCGGCA
CCGGCGAGAGCAGCGGGCGGCGGCGGTGGCGCTGCGCCGCTGGGGACTGG
ATCCGCTCGAGTTCACGCTGTCGGCGGCAGCACAGCGCGCCGACCTGGCA
GCGGACTTCCGCCGGACCATGGAGGACTTCCAGGCGGCAGCCGACGCCTG
GCGCGGCGGCCGCTGGGACTCGTACCGCCGCGGCGTCGTGCTCCGGAGCC
GCGCGCTGTTCGCGCTGGAGCAGTGCCGTGCCAAGAAACGTGACACGGTG
CTCATCGCCGACCGGAGCCACCCGGATTGCGGCCTGACCGGGCGCGTCCT
GGCCGTCGACTGCACGGTGCCGGGCCAGGAGATGGCGGAGATCAAGCTGG
ACGGGCAGGGCGGCCGCATTGCCTTCGTGCGGGTGCTAACGGACGTCCAG
AATGGAGGTGAAGTGGCCGAGCCCCGGACCATCGCCGTGCCCGCCATGGA
CAGCGTCCAGTACGCGAACGCCGACCTTCAGCGCGTCCGCCTGGCGGTCC
TAGCCTGGGCTGCGCGCGAGCGGGAGACGTGGGTGCCCTACGCCGCCGCA
CGCCAGCTGCAGCGTACTGTGCGCGGCTTCCTGGCGCGTCGTGCAACGGC
GCGGCGCCGCCACCGCCTCTGGAGTGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5300:1299..1977-

>mRNA_P-wetherbeei_contig5300.4.1 ID=mRNA_P-wetherbeei_contig5300.4.1|Name=mRNA_P-wetherbeei_contig5300.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:1299..1977- (Phaeothamnion wetherbeei SAG_119_79)
GCCACGCGCCGGCGGCGGGCGGCCGTCCTCCGGCTGCTGGGCTGGCGGCA
CCGGCGAGAGCAGCGGGCGGCGGCGGTGGCGCTGCGCCGCTGGGGACTGG
ATCCGCTCGAGTTCACGCTGTCGGCGGCAGCACAGCGCGCCGACCTGGCA
GCGGACTTCCGCCGGACCATGGAGGACTTCCAGGCGGCAGCCGACGCCTG
GCGCGGCGGCCGCTGGGACTCGTACCGCCGCGGCGTCGTGCTCCGGAGCC
GCGCGCTGTTCGCGCTGGAGCAGTGCCGTGCCAAGAAACGTGACACGGTG
CTCATCGCCGACCGGAGCCACCCGGATTGCGGCCTGACCGGGCGCGTCCT
GGCCGTCGACTGCACGGTGCCGGGCCAGGAGATGGCGGAGATCAAGCTGG
ACGGGCAGGGCGGCCGCATTGCCTTCGTGCGGGTGCTAACGGACGTCCAG
AATGGAGGTGAAGTGGCCGAGCCCCGGACCATCGCCGTGCCCGCCATGGA
CAGCGTCCAGTACGCGAACGCCGACCTTCAGCGCGTCCGCCTGGCGGTCC
TAGCCTGGGCTGCGCGCGAGCGGGAGACGTGGGTGCCCTACGCCGCCGCA
CGCCAGCTGCAGCGTACTGTGCGCGGCTTCCTGGCGCGTCGTGCAACGGC
GCGGCGCCGCCACCGCCTCTGGAGTGAG
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