mRNA_P-wetherbeei_contig5300.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5300.1.1
Unique NamemRNA_P-wetherbeei_contig5300.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A836CMJ1_9STRA (C2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.230e-13
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  781 MSMQSSDPFLTLRCNNRAWRTQTRYQTLTPTWNERWHVDVTNPAAVLVVECWDEDRLGSEFMGQATVPL 987
            M    SDPFL LRCN    RT T    L P ++E +  D+T+PAA LVVECWDE+  GS+F+G ATV L
Sbjct:    1 MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHL 69
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A7S0D4G1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D4G1_MICPS)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-9
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  730 LYVTVFRAKDLPAMDRTMSMQSSDPFLTLRCNNRAWRTQTRYQTLTPTWNERWHV-----DVTNPAAVLVVECWDEDRLGSEFMGQATVPLAEL 996
            L++T+ R + L A D T    SSDP+  L+   + W++   YQTL PT++          D+  P  VL +ECWDED +G +FMG+A VPL ++
Sbjct:  638 LHITLVRGESLVAKDAT---GSSDPYFKLKLKTQKWKSPVAYQTLNPTYDAALEFFVAPEDLLVPGVVLKLECWDEDIVGKDFMGEAEVPLRKI 728
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A0D7BD57_9AGAR (Uncharacterized protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BD57_9AGAR)

HSP 1 Score: 60.8 bits (146), Expect = 2.110e-6
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  727 TLYVTVFRAKDLPAMDRTMSMQSSDPFLTLRCNN-RAWRTQTRYQTLTPTWNERWHVDVTNPA-AVLVVECWDEDRLG-SEFMGQATVPLAELK 999
            TL +TV RA+DLPA+DR+    +SDPF  +  N+ + +++QT+ +TL P WNE +   V++   A  V+E WD +++  +E +G A++ LAEL+
Sbjct: 1031 TLRMTVLRARDLPAVDRS---GTSDPFTVVTINDQKVFKSQTKKKTLNPHWNEDFTAVVSSRVDAECVIEVWDWNQIEQAESLGSASINLAELE 1121
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A0V0YA23_TRIPS (Double C2-like domain-containing protein beta n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0YA23_TRIPS)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-5
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  721 EKTLYVTVFRAKDLPAMDRTMSMQSSDPFLTLRC-----NNRAWRTQTRYQTLTPTWNERWHV------DVTNPAAVLVVECWDEDRLGSEFMGQATVPLAELK 999
            E+ L VT+F+A +LPAMD   S   SDP++ L        +   RT T+++TL P WNER         D+      L+V   D+DR+GS+F+G+   PL  L+
Sbjct:  149 EEMLIVTIFQASNLPAMD---SNGFSDPYVKLHLLPLANKSTKLRTSTKWKTLNPRWNERLIYYGMSKDDLRKKTLRLMV--LDQDRIGSDFLGETRAPLKRLQ 247
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A0V0YAR7_TRIPS (Double C2-like domain-containing protein beta n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0YAR7_TRIPS)

HSP 1 Score: 56.6 bits (135), Expect = 3.660e-5
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  721 EKTLYVTVFRAKDLPAMDRTMSMQSSDPFLTLRC-----NNRAWRTQTRYQTLTPTWNERWHV------DVTNPAAVLVVECWDEDRLGSEFMGQATVPLAELK 999
            E+ L VT+F+A +LPAMD   S   SDP++ L        +   RT T+++TL P WNER         D+      L+V   D+DR+GS+F+G+   PL  L+
Sbjct:  300 EEMLIVTIFQASNLPAMD---SNGFSDPYVKLHLLPLANKSTKLRTSTKWKTLNPRWNERLIYYGMSKDDLRKKTLRLMV--LDQDRIGSDFLGETRAPLKRLQ 398
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A0V1BQB8_TRISP (Double C2-like domain-containing protein beta n=10 Tax=Trichinella TaxID=6333 RepID=A0A0V1BQB8_TRISP)

HSP 1 Score: 56.6 bits (135), Expect = 4.100e-5
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  721 EKTLYVTVFRAKDLPAMDRTMSMQSSDPFLTLRC-----NNRAWRTQTRYQTLTPTWNERWHV------DVTNPAAVLVVECWDEDRLGSEFMGQATVPLAELK 999
            E+ L VT+F+A +LPAMD   S   SDP++ L        +   RT T+++TL P WNER         D+      L+V   D+DR+GS+F+G+   PL  L+
Sbjct:  474 EEMLVVTIFQASNLPAMD---SNGFSDPYVKLHLLPLANKSTKLRTSTKWKTLNPRWNERLIYYGMSKDDLRKKTLRLMV--LDQDRIGSDFLGETRAPLKRLQ 572
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A0V0YB78_TRIPS (Double C2-like domain-containing protein beta (Fragment) n=4 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0YB78_TRIPS)

HSP 1 Score: 56.6 bits (135), Expect = 4.170e-5
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  721 EKTLYVTVFRAKDLPAMDRTMSMQSSDPFLTLRC-----NNRAWRTQTRYQTLTPTWNERWHV------DVTNPAAVLVVECWDEDRLGSEFMGQATVPLAELK 999
            E+ L VT+F+A +LPAMD   S   SDP++ L        +   RT T+++TL P WNER         D+      L+V   D+DR+GS+F+G+   PL  L+
Sbjct:  516 EEMLIVTIFQASNLPAMD---SNGFSDPYVKLHLLPLANKSTKLRTSTKWKTLNPRWNERLIYYGMSKDDLRKKTLRLMV--LDQDRIGSDFLGETRAPLKRLQ 614
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A8J5KHJ3_ZINOF (Uncharacterized protein n=8 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KHJ3_ZINOF)

HSP 1 Score: 55.5 bits (132), Expect = 8.210e-5
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  730 LYVTVFRAKDLPAMDRTMSMQSSDPFLTLRCNNRAWRTQTRY--QTLTPTWNERWHVDVTNPAA-VLVVECWDEDRLGSEFMGQATVPLAELKQKHATRLWLPL 1032
            L VT+   +DLPAMD    M  +DPF+ +R      + +TR    +L PTWN+ + + V +    +L++E WD D  G ++MG+  + L  +  +   R   PL
Sbjct:  392 LSVTIISGEDLPAMD---VMGKADPFVVIRMKKSETKNKTRVVNDSLNPTWNQTFDIVVEDGLHDMLILEVWDHDTFGKDYMGRCIMTLTRVILEGEVRDSFPL 492
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BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Match: A0A8J2WYP3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYP3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.210e-5
Identity = 45/138 (32.61%), Postives = 67/138 (48.55%), Query Frame = 1 
Query:  646 RSNDLLHPHGEGFAELLDGWGCATEEKTLYVTVFRAKDLPAMDRTM--SMQSSDPFLTLRCNN---RAWRTQTRYQTLTPTWNERWHVDVT--NPAAVLVVECWDEDRL-GSEFMGQATVPLAELKQKHATRLWLPLG 1035
            R+ DL     E F +  +    A E   L +    A  L   D+ +  S  SSDPFLT        + ++T+ + ++L P W+E++   VT    +  LV  C D D + GS+FMGQ +V L ELK +   + W  LG
Sbjct: 2409 RNRDLAF---EPFEDQTEAEFLAKEPNELRIAAVSALGLAVADKNLLSSGGSSDPFLTFALEGSSLKPFKTKPKKKSLDPVWHEQFARSVTPGKESMKLVCTCEDWDEVSGSDFMGQFSVDLDELKDQKVLKKWFKLG 2543
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CMJ1_9STRA6.230e-1353.62C2 domain-containing protein n=2 Tax=Tribonema min... [more]
A0A7S0D4G1_MICPS1.940e-939.36Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A0D7BD57_9AGAR2.110e-640.43Uncharacterized protein n=1 Tax=Cylindrobasidium t... [more]
A0A0V0YA23_TRIPS2.980e-537.50Double C2-like domain-containing protein beta n=1 ... [more]
A0A0V0YAR7_TRIPS3.660e-537.50Double C2-like domain-containing protein beta n=2 ... [more]
A0A0V1BQB8_TRISP4.100e-537.50Double C2-like domain-containing protein beta n=10... [more]
A0A0V0YB78_TRIPS4.170e-537.50Double C2-like domain-containing protein beta (Fra... [more]
A0A8J5KHJ3_ZINOF8.210e-532.69Uncharacterized protein n=8 Tax=Zingiber officinal... [more]
A0A8J2WYP3_9STRA9.210e-532.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5300contigP-wetherbeei_contig5300:146..1200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQA7
Preferred nameFBXO39
PFAMsF-box-like,IQ,LRR_6,MORN
Model size1044
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
Evalue2.43e-27
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
EC2.7.4.3
DescriptionF-box LRR-repeat protein
Cds size1041
COG categoryB
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.0246267-CDS-P-wetherbeei_contig5300:147..8881683186794.0246267-CDS-P-wetherbeei_contig5300:147..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5300 148..888 -
1683186794.0345957-CDS-P-wetherbeei_contig5300:900..12001683186794.0345957-CDS-P-wetherbeei_contig5300:900..1200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5300 901..1200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5300.1.1prot_P-wetherbeei_contig5300.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5300 148..1200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5300.1.1

>prot_P-wetherbeei_contig5300.1.1 ID=prot_P-wetherbeei_contig5300.1.1|Name=mRNA_P-wetherbeei_contig5300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
DEIIEAPLPVAPWPPPRLAAVLRARLHRRILQEELEERQRRRSEQALARP
DLFRWRSPAVGPLFREVGRLQQWAEAAAAVARGAVAWMKPAWVQEEAEVA
IPATAAAAEEEKDGEKQKQRQQDTTMKQKKKRRRRQRLPSAAAEAAAVLT
RPYTFAQLELSPHVRTAGRALYHGVWAPSHGYGYYGGCGGYGGDVNGGTG
RGGGSGSCGDSGSIDRSNDLLHPHGEGFAELLDGWGCATEEKTLYVTVFR
AKDLPAMDRTMSMQSSDPFLTLRCNNRAWRTQTRYQTLTPTWNERWHVDV
TNPAAVLVVECWDEDRLGSEFMGQATVPLAELKQKHATRLWLPLGPD
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mRNA from alignment at P-wetherbeei_contig5300:146..1200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5300.1.1 ID=mRNA_P-wetherbeei_contig5300.1.1|Name=mRNA_P-wetherbeei_contig5300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1055bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:146..1200- (Phaeothamnion wetherbeei SAG_119_79)
GACGAAATAATTGAGGCGCCGCTGCCGGTCGCGCCGTGGCCGCCGCCGCG
GCTGGCGGCGGTCTTGCGCGCCCGCCTCCACCGGCGTATCCTGCAGGAGG
AGCTGGAAGAGCGGCAGCGACGCCGTTCCGAGCAGGCGCTGGCGCGTCCG
GACCTATTCCGGTGGCGGTCGCCGGCGGTCGGCCCGCTGTTTCGGGAGGT
CGGAAGGCTGCAGCAGTGGGCCGAGGCGGCCGCGGCGGTGGCGCGGGGCG
CGGTGGCGTGGATGAAGCCGGCGTGGGTTCAGGAGGAGGCGGAGGTGGCG
GCTGTGGCGAAGATACCTGCGACGGCGGCAGCGGCAGAGGAGGAGAAGGA
CGGCGAGAAGCAAAAGCAGCGGCAGCAGGACACGACGATGAAGCAAAAGA
AGAAGCGGCGGCGGCGGCAGCGACTGCCGTCCGCCGCGGCGGAAGCGGCA
GCCGTTCTGACGCGCCCCTACACCTTTGCGCAGCTCGAGCTCAGCCCACA
CGTGCGCACCGCCGGTCGCGCCCTCTACCATGGCGTCTGGGCTCCCAGCC
ACGGCTATGGTTACTACGGCGGTTGCGGCGGTTATGGCGGTGACGTCAAC
GGCGGTACAGGCAGGGGCGGCGGCTCGGGCAGTTGTGGCGACAGTGGTTC
CATTGACCGTAGCAACGACCTGCTCCATCCGCACGGCGAAGGTTTCGCGG
AGCTGCTGGACGGTTGGGGCTGCGCAACGGAAGAAAAAACGCTCTACGTC
ACTGTTTTCCGCGCCAAGGACCTGCCTGCCATGGACCGGACCATGTCGAT
GCAGAGCAGCGACCCGTTTCTGACGCTCCGCTGCAACAACCGTGCCTGGC
GTACGCAGACGCGCTACCAGACGCTGACACCGACCTGGAACGAGCGCTGG
CACGTCGACGTCACCAACCCAGCAGCCGTTCTGGTGGTGGAGTGCTGGGA
CGAGGATCGGCTCGGCAGCGAGTTCATGGGCCAGGCGACGGTGCCGCTGG
CGGAGCTGAAGCAGAAGCATGCGACGCGGCTCTGGCTGCCACTGGGGCCG
GACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5300:146..1200-

>mRNA_P-wetherbeei_contig5300.1.1 ID=mRNA_P-wetherbeei_contig5300.1.1|Name=mRNA_P-wetherbeei_contig5300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:146..1200- (Phaeothamnion wetherbeei SAG_119_79)
GACGAAATAATTGAGGCGCCGCTGCCGGTCGCGCCGTGGCCGCCGCCGCG
GCTGGCGGCGGTCTTGCGCGCCCGCCTCCACCGGCGTATCCTGCAGGAGG
AGCTGGAAGAGCGGCAGCGACGCCGTTCCGAGCAGGCGCTGGCGCGTCCG
GACCTATTCCGGTGGCGGTCGCCGGCGGTCGGCCCGCTGTTTCGGGAGGT
CGGAAGGCTGCAGCAGTGGGCCGAGGCGGCCGCGGCGGTGGCGCGGGGCG
CGGTGGCGTGGATGAAGCCGGCGTGGGTTCAGGAGGAGGCGGAGGTGGCG
ATACCTGCGACGGCGGCAGCGGCAGAGGAGGAGAAGGACGGCGAGAAGCA
AAAGCAGCGGCAGCAGGACACGACGATGAAGCAAAAGAAGAAGCGGCGGC
GGCGGCAGCGACTGCCGTCCGCCGCGGCGGAAGCGGCAGCCGTTCTGACG
CGCCCCTACACCTTTGCGCAGCTCGAGCTCAGCCCACACGTGCGCACCGC
CGGTCGCGCCCTCTACCATGGCGTCTGGGCTCCCAGCCACGGCTATGGTT
ACTACGGCGGTTGCGGCGGTTATGGCGGTGACGTCAACGGCGGTACAGGC
AGGGGCGGCGGCTCGGGCAGTTGTGGCGACAGTGGTTCCATTGACCGTAG
CAACGACCTGCTCCATCCGCACGGCGAAGGTTTCGCGGAGCTGCTGGACG
GTTGGGGCTGCGCAACGGAAGAAAAAACGCTCTACGTCACTGTTTTCCGC
GCCAAGGACCTGCCTGCCATGGACCGGACCATGTCGATGCAGAGCAGCGA
CCCGTTTCTGACGCTCCGCTGCAACAACCGTGCCTGGCGTACGCAGACGC
GCTACCAGACGCTGACACCGACCTGGAACGAGCGCTGGCACGTCGACGTC
ACCAACCCAGCAGCCGTTCTGGTGGTGGAGTGCTGGGACGAGGATCGGCT
CGGCAGCGAGTTCATGGGCCAGGCGACGGTGCCGCTGGCGGAGCTGAAGC
AGAAGCATGCGACGCGGCTCTGGCTGCCACTGGGGCCGGAC
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