mRNA_P-wetherbeei_contig53.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53.6.1
Unique NamemRNA_P-wetherbeei_contig53.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: D7G6X3_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X3_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 7.890e-45
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 PWMNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGK-CRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFEN--WERVMGYDVP 435
            PWMNNCVG+ N K+F LFL Y LA   YA+GL L HF++C   + C  YS L  NL+R  +V+A A  +FT SMLLNQ  GV++G+GTVDRMQRR+K+       E D RP+ W D+FG GN+L+W+ PTDP F     ER++G+  P
Sbjct:  167 PWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVIAAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPE-DFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREP 313          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A448ZS22_9STRA (Palmitoyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS22_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.920e-35
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 PWMNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            PWMNNCVG  NLKHFFLFL+YT    +Y L L   ++  C    C  ++ + T LVR+  VL     LFT SM++N + G+++GVGT+DR++++  D M     +S + PVP +D+FG G    W LP DP FE+++ VMG+  P+
Sbjct:    6 PWMNNCVGAGNLKHFFLFLIYTWTCNVYCLVLLGWNYFFCASEDCE-FNVVLTQLVRIMTVLCVGSFLFTSSMIMNVIYGIMTGVGTIDRLKKKAADTMK----DSIEEPVPLIDIFGIGPWWTWPLPIDPIFEDFDAVMGFATPQ 146          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: B8BR09_THAPS (Palmitoyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR09_THAPS)

HSP 1 Score: 119 bits (298), Expect = 3.120e-29
Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 MNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            +NNCVGV NLKHF LFLVYT +  +++L L   ++  C    C  ++ + T LVR   VL+    LFT SM++N   G+++G+GT+DR++++   ++     E+ + P+P  DVFG G  + WL P DP FE+++RV+G+  P+
Sbjct:  242 INNCVGVGNLKHFILFLVYTWSCAVFSLLLLGWNYFMCADEDC-TFNGVLTQLVRAVTVLSIGALLFTSSMIMNVTFGLMTGIGTIDRLKKKASGQI----GEAIEEPIPLKDVFGVGAYVTWLFPIDPVFEDYDRVLGFSTPQ 380          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A7S1VQ19_9STRA (Palmitoyltransferase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQ19_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.000e-28
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   19 VGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            VG  NLKHF LFLVYT     +ALGLF  ++  C    C  +  +  +LVRV  +L     LFT SML+N   G+++G+GT+DR+    K + TN  + SD+ P+P +DVFG      W LP DP FE+++RVMGY +P+
Sbjct:  243 VGAGNLKHFCLFLVYTWTCSAFALGLFGWNYFLCADEDC-TFHPIVVHLVRVMTILCVGAFLFTSSMLMNVTYGLMTGIGTIDRL----KKKATNTMSSSDEEPIPLMDVFGIAGYHTWWLPLDPVFESYDRVMGYSLPQ 377          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A7S2LML0_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LML0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.320e-28
Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   22 GVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            G  N KHF LFL+Y  A+  YAL L   ++  C   +C  ++ + T LVR+  +LA    LFT SML+N   G+++G+GT+DR++++  + M+    +SD+ P+P  D+FG      WLLP DP FE+++RVMGY  P+
Sbjct:   75 GAANFKHFILFLMYMWASSGYALLLLGWNYFMCADEEC-TFTTVLTQLVRIMTLLAIGAFLFTSSMLMNVCYGIMTGIGTIDRLKKKANNTMS----QSDEEPIPLKDIFGIQGYHTWLLPVDPLFEDYDRVMGYSTPQ 208          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A1Z5JN23_FISSO (Palmitoyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JN23_FISSO)

HSP 1 Score: 115 bits (289), Expect = 3.210e-28
Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   19 VGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVP 435
            VG  NLKHF LFL+YT ++  YAL LF  ++  C    C  +  +  +LVR+  +LA    LFT SML+N   G+++G+GT+DR+    K + TN   +SD+ P+  +DVFG G    W  P DP FE+++RVMGY +P
Sbjct:  190 VGAANLKHFILFLIYTWSSSAYALSLFGWNYFFCADDDC-TFHPIIIHLVRLMTLLAIGAFLFTSSMLMNVCYGIMTGIGTIDRL----KKKATNTMNQSDEEPIQLIDVFGIGPIYTWPFPVDPIFEDFDRVMGYTMP 323          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A7S2UL41_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UL41_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.210e-28
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   19 VGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            VG  N KHF LFL+YT  +  +AL +F  ++  C    C  ++ +   LVR   +L     LFT SM++N   G+++G+GT+DR+    K +  N   ES++ PVP +D+FG G  L W  P DP FE+++R+MGY  P+
Sbjct:   49 VGAGNFKHFILFLIYTWLSSAFALVMFGWNYFLCSSEDC-TFTVVLVQLVRAMTILCVPTLLFTSSMIMNVTYGIMTGIGTIDRL----KKKALNTVGESEEEPVPLIDIFGVGGVLTWPFPVDPIFEDYDRIMGYCTPQ 183          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A835YVM4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.560e-28
Identity = 62/149 (41.61%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 PWMNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELG--KCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWER--VMGYDVP 435
            PW+NNC+G  N K F LFL YTL   +Y LGL   +F  CE G   C  ++   +      +VL+F   LFT +ML NQ   V+ GVGTVDR+QRR+K R    P    +R + W  V G G++L WLLP D  +   +   ++GY +P
Sbjct:  174 PWVNNCIGALNQKAFILFLAYTLLLSVYGLGLGAAYFYACESGDESCLEHTPTTSTFAPTLLVLSFGALLFTVTMLANQTHSVVKGVGTVDRVQRRRK-RQPPHPLTHVERALRWRRVVGTGSKLRWLLPLDIAYSERDAPLLLGYVIP 321          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A7S1Z5A4_9STRA (Palmitoyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5A4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.130e-28
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   19 VGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            +G  NLKHF LFL+YT  TC YA+ L   ++  C    C  +  +   L RV   L+    LF  SML+N   G+++G+GT+DR++++  D M     ESD+ P+P  DVFG      WLLP DP FE+++RVMGY  P+
Sbjct:  170 IGAGNLKHFILFLIYTWLTCGYAMLLLGWNYFFCATENC-TFGTVVIQLARVMTFLSVGAFLFISSMLMNVFYGLMTGIGTIDRLKKKALDTML----ESDEEPIPLKDVFGIAGYHTWLLPIDPVFEDYDRVMGYSTPQ 304          
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Match: A0A7S1Y3T6_9STRA (Palmitoyltransferase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3T6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.000e-27
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    1 PWMNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLDTNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNAPAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR 438
            PWMNNCVG  N+KHF LFL YT      AL +F  ++  CE   C  ++ +   LVR   V+     LFT SML+N   G+++G GT+DR+    K + TN    S+D PVP   VFG      W LP DP F +++++MGY  P+
Sbjct:  231 PWMNNCVGAGNMKHFILFLGYTWTGSSLALLIFAWNYFLCESEIC-VFNVVLVQLVRAMSVICVGSLLFTSSMLMNVTYGIITGTGTIDRL----KKKATNTLYLSEDEPVPLEVVFGIQGYWSWFLPIDPVFADFDKIMGYSTPQ 371          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X3_ECTSI7.890e-4552.03Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A448ZS22_9STRA6.920e-3543.84Palmitoyltransferase n=1 Tax=Pseudo-nitzschia mult... [more]
B8BR09_THAPS3.120e-2940.28Palmitoyltransferase n=1 Tax=Thalassiosira pseudon... [more]
A0A7S1VQ19_9STRA1.000e-2844.29Palmitoyltransferase n=1 Tax=Grammatophora oceanic... [more]
A0A7S2LML0_9STRA1.320e-2841.01Palmitoyltransferase (Fragment) n=1 Tax=Leptocylin... [more]
A0A1Z5JN23_FISSO3.210e-2843.17Palmitoyltransferase n=2 Tax=Fistulifera solaris T... [more]
A0A7S2UL41_9STRA6.210e-2839.29Palmitoyltransferase n=1 Tax=Attheya septentrional... [more]
A0A835YVM4_9STRA6.560e-2841.61Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1Z5A4_9STRA7.130e-2842.14Palmitoyltransferase n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Y3T6_9STRA1.000e-2741.78Palmitoyltransferase n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53contigP-wetherbeei_contig53:13232..14028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6X3
PFAMsDHHC
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K20029
KEGG TC9.B.37.2
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.17e-42
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-01_011910.1
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size432
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.9774187-CDS-P-wetherbeei_contig53:13231..134381683186793.9774187-CDS-P-wetherbeei_contig53:13231..13438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53 13232..13438 -
1683186793.9895103-CDS-P-wetherbeei_contig53:13797..140221683186793.9895103-CDS-P-wetherbeei_contig53:13797..14022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53 13798..14022 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.0004268-UTR-P-wetherbeei_contig53:14022..140281683186794.0004268-UTR-P-wetherbeei_contig53:14022..14028Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53 14023..14028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53.6.1prot_P-wetherbeei_contig53.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53 13232..14022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53.6.1

>prot_P-wetherbeei_contig53.6.1 ID=prot_P-wetherbeei_contig53.6.1|Name=mRNA_P-wetherbeei_contig53.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MNNCVGVRNLKHFFLFLVYTLATCMYALGLFLRHFIQCELGKCRAYSNLD
TNLVRVAMVLAFAGTLFTFSMLLNQVGGVLSGVGTVDRMQRRKKDRMTNA
PAESDDRPVPWVDVFGAGNRLLWLLPTDPRFENWERVMGYDVPR
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mRNA from alignment at P-wetherbeei_contig53:13232..14028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53.6.1 ID=mRNA_P-wetherbeei_contig53.6.1|Name=mRNA_P-wetherbeei_contig53.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=797bp|location=Sequence derived from alignment at P-wetherbeei_contig53:13232..14028- (Phaeothamnion wetherbeei SAG_119_79)
CCATGGATGAACAATTGCGTGGGGGTGCGCAACCTGAAGCACTTCTTCCT TTTCCTGGTCTACACGTTGGCGACGTGCATGTACGCCCTGGGGCTCTTCC TGCGGCACTTCATCCAGTGTGAGCTCGGCAAGTGCCGCGCCTACTCCAAC CTCGATACCAATCTGGTGCGGGTGGCCATGGTCCTCGCCTTCGCGGGCAC GCTCTTCACATTTTCCATGCTCCTCAACCAGGTGAGGGGAAGACGAACGG AGGAAGGAGCCGTCAAAGAGATGGAAATGTGGTTTTTTGCCGGCCAGCCA ACTGGCGGGAGGCAAGAAAAAATGCGTGTGTGGCCGTCCAAGTTTACTGG CCGGTTTCGAATCGCTATTTGCTCTTGGAGCTGTCTCCTTAGCCAAAAAT GCACAAGAGGTGCAGCATATCATCCTGCTGATACTCTTGTCGCCACCATC GCCGTACCAGCGAATTAAAGTTGACACATTTACCATCCTCTCGTTTCCAC CCTCTCACTTATCTACCGTTCGGATGGCCGGCCCGCTTCTGACAACAAAT TTGAAATCCATATCAAAAAACAAACTTATATCGCGGGCAGGTCGGTGGCG TGCTGAGCGGCGTGGGCACGGTGGATCGCATGCAGCGCCGCAAGAAGGAC CGGATGACGAACGCCCCCGCCGAGTCCGACGACCGCCCCGTACCGTGGGT CGACGTCTTTGGCGCCGGGAACCGTCTCCTCTGGCTGCTACCGACGGACC CCCGCTTCGAAAACTGGGAGCGCGTCATGGGCTACGACGTGCCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53:13232..14028-

>mRNA_P-wetherbeei_contig53.6.1 ID=mRNA_P-wetherbeei_contig53.6.1|Name=mRNA_P-wetherbeei_contig53.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig53:13232..14028- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAATTGCGTGGGGGTGCGCAACCTGAAGCACTTCTTCCTTTTCCT
GGTCTACACGTTGGCGACGTGCATGTACGCCCTGGGGCTCTTCCTGCGGC
ACTTCATCCAGTGTGAGCTCGGCAAGTGCCGCGCCTACTCCAACCTCGAT
ACCAATCTGGTGCGGGTGGCCATGGTCCTCGCCTTCGCGGGCACGCTCTT
CACATTTTCCATGCTCCTCAACCAGGTCGGTGGCGTGCTGAGCGGCGTGG
GCACGGTGGATCGCATGCAGCGCCGCAAGAAGGACCGGATGACGAACGCC
CCCGCCGAGTCCGACGACCGCCCCGTACCGTGGGTCGACGTCTTTGGCGC
CGGGAACCGTCTCCTCTGGCTGCTACCGACGGACCCCCGCTTCGAAAACT
GGGAGCGCGTCATGGGCTACGACGTGCCGCGC
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