mRNA_P-wetherbeei_contig5299.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5299.1.1
Unique NamemRNA_P-wetherbeei_contig5299.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5299.1.1 vs. uniprot
Match: A0A1X7TTT5_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TTT5_AMPQE)

HSP 1 Score: 114 bits (284), Expect = 6.320e-24
Identity = 78/271 (28.78%), Postives = 145/271 (53.51%), Query Frame = 1 
Query:  628 KSAKPKTSPSQESIKALLKDKKLQDEGLHLDAANKGRVHCTFCKGSVQGTRHEVKHHIKTDKHKVQKGNHTLKEAANETLNNHMLELKKQL-VSGSSLTPNTIKLRMRVVQVFAESGTPLHRVPYFRPLFEELSGLRLTDVSELRRMVPDLLKIEENRLFKDLTGKKVAVVFDGTTRTHEVFAVVARFMDADGRVQQRLIEQVYLPLAAFNAGDVAR-VIAFKLTKWDVQYDDVVAFVSDRCATNLAAIGALKPFYSSAMMIGCESHTFDN 1434
            + +KP  S   +S+    + K+  +E   + A   G++ CT C+  V      + +HIK  KH   K N + KE+    +   + +   Q   SG +L       R++VV+ F ++G  L+ +  FR + E+    +L+D   +   +P +L+ E+ ++ K++ GK ++V+FDGTTR  E  AV+ R+++ D  VQQRL+ +V + + +    ++AR +++    ++ V  + ++A + DR + N  A+ A+K  Y +   IGC SHT D+
Sbjct:   79 RKSKPSCSTDPKSVTPHQRLKEFPNEEFTVSA---GKLFCTACREEVSLKMSIINNHIKATKHVRGKENLSKKESREHDIAQALKKFDDQNHPSGETLPTAQRVFRIKVVKSFLKAGVALNNLEQFREVLEQ-GSYKLSDRRGMYDTIPFILEEEQAKIKKEINGKSISVIFDGTTRLGEALAVIVRYVN-DWEVQQRLV-RVQMLVKSMTGEEIARELVSILSVEYSVSVELLLACMHDRASVNGVAMQAIKFLYPNVTSIGCYSHTLDH 343
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BLAST of mRNA_P-wetherbeei_contig5299.1.1 vs. uniprot
Match: A0A2B4RQV1_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQV1_STYPI)

HSP 1 Score: 92.8 bits (229), Expect = 9.100e-17
Identity = 49/171 (28.65%), Postives = 94/171 (54.97%), Query Frame = 1 
Query:  922 PNTIKLRMRVVQVFAESGTPLHRVPYFRPLFEELSGLRLTDVSELRRMVPDLLKIEENRLFKDLTGKKVAVVFDGTTRTHEVFAVVARFMDADGRVQQRLIEQVYLPLAAFNAGDVARVIAFKLTKWDVQYDDVVAFVSDRCATNLAAIGALKPFYSSAMMIGCESHTFDN 1434
            P T+  R +VV+ F ++G P++++  FR +FE+  G  L+  S L  M+  + K E+ ++ K++TG+ V+V+FDGT    E   ++  F+  D +++Q L++ + +  +        ++++   T   +    ++A   DR + N  A+  LK  Y + + IGC SHT D+
Sbjct:    9 PTTV-YRFKVVRAFLKAGVPINKIDQFREIFED-QGYSLSHSSNLSTMIDVINKEEKEKVKKEITGRNVSVIFDGTAHVSEATNIIVGFVSDDWKIEQHLVKLLLVKKSMTGEELAQQLLSCLSTNLGINLALLLAATRDRASVNDVAVRTLKILYPNLVDIGCFSHTLDH 177
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BLAST of mRNA_P-wetherbeei_contig5299.1.1 vs. uniprot
Match: A0A2B4RAB2_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RAB2_STYPI)

HSP 1 Score: 77.4 bits (189), Expect = 2.280e-11
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 1 
Query: 1009 LFEELSGLRLTDVSELRRMVPDLLKIEENRLFKDLTGKKVAVVFDGTTRTHEVFAVVARFMDADGRVQQRLIEQVYLPLAAFNAGDVARVIAFKLTKWDVQYDDVVAFVSDRCATNLAAIGALKPFYSSAMMIGCESHTFDN 1434
            +FEE  G  L+  S L  M+  + K E+ ++ K++TG+ V+V+FDGTT   E   ++ RF+  D +++QR ++ + +  +  +     ++++   T   +    ++A + DR + N  A+  LK  Y   + IGC SHT D+
Sbjct:  304 IFEE-QGYSLSHSSNLSSMIDVINKEEKEKVKKEITGRNVSVIFDGTTHVSEATNIILRFVSDDWKIEQRFVKLLLVTKSMTDEELAQQLLSCLSTNLGINSALLLAAMRDRTSVNDVAVRTLKLLYPDPVHIGCFSHTLDH 444
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BLAST of mRNA_P-wetherbeei_contig5299.1.1 vs. uniprot
Match: A0A836CBB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-6
Identity = 46/165 (27.88%), Postives = 77/165 (46.67%), Query Frame = 1 
Query:  721 AANKGRVHCTFCKGSVQGTRHEVKHHIKTDKHKVQKGNHTLKEAANETLNNHMLELKKQL-VSGSSLTPNTIKLRMRVVQVFAESGTPLHRVPYFRPLFEELSGLRLTDVSELRRMVPDLLKIEENRLFKDLTGKKVAVVFDGTTRTHEVFAVVARFMDADGRVQ 1212
            AA+ GR+ C  CK  +   +  V  HI   KH         K A  +T +  + E   +    G+SLT      R+  +++   S  PLH++        E  G  LT+ S +  ++P +L+ E   L +++ G+K++V+FDGTTR      +    + AD  +Q
Sbjct:  103 AADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQ 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5299.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1X7TTT5_AMPQE6.320e-2428.78Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
A0A2B4RQV1_STYPI9.100e-1728.65Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
A0A2B4RAB2_STYPI2.280e-1129.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=St... [more]
A0A836CBB9_9STRA1.830e-627.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5299contigP-wetherbeei_contig5299:2126..3714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15703819
Model size1434
Max annot lvl400682.PAC_15703819|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.85e-19
EggNOG OGs2F3H4@1|root,2T4GH@2759|Eukaryota,3AMYP@33154|Opisthokonta,3C10E@33208|Metazoa
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.6606252-UTR-P-wetherbeei_contig5299:2125..30011683186793.6606252-UTR-P-wetherbeei_contig5299:2125..3001Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5299 2126..3001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.6720877-CDS-P-wetherbeei_contig5299:3001..33701683186793.6720877-CDS-P-wetherbeei_contig5299:3001..3370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5299 3002..3370 +
1683186793.6819947-CDS-P-wetherbeei_contig5299:3525..37141683186793.6819947-CDS-P-wetherbeei_contig5299:3525..3714Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5299 3526..3714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5299.1.1prot_P-wetherbeei_contig5299.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5299 3002..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5299.1.1

>prot_P-wetherbeei_contig5299.1.1 ID=prot_P-wetherbeei_contig5299.1.1|Name=mRNA_P-wetherbeei_contig5299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MLELKKQLVSGSSLTPNTIKLRMRVVQVFAESGTPLHRVPYFRPLFEELS
GLRLTDVSELRRMVPDLLKIEENRLFKDLTGKKVAVVFDGTTRTHEVFAV
VARFMDADGRVQQRLIEQVYLPLAAFNAGDVARVIAFKLTKWDVQYDDVV
AFVSDRCATNLAAIGALKPFYSSAMMIGCESHTFDN
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mRNA from alignment at P-wetherbeei_contig5299:2126..3714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5299.1.1 ID=mRNA_P-wetherbeei_contig5299.1.1|Name=mRNA_P-wetherbeei_contig5299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1589bp|location=Sequence derived from alignment at P-wetherbeei_contig5299:2126..3714+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGGCCTAAGCCTGACGGAACTGATTGTGGCAACAACCTGGTGAGCAGC
CATCATGCATGTGACAAATGTGGGTGCCCAATGCATGCGTTTTGTGGCTT
TGACGTTCTCGATGCTGATGGCGATGTCATAGAGGGCTTTGGGGCGCCAC
GTCGCTGCGGCGATTGCAACGCTATTGCTCCGACGCCTGCATCGGCCGTC
GAGGACATGACCGGCGATTCGGACGAGGAGGAGGAGGTCTCCACTATGCT
CTGCAGCGGCACCGCCTTCCTCTCGACGGCGATTCCCCTCTACTCCCTTG
CGAAGGGCGGTAGGAAGAGGAATGCTTTCACGGCGCTCATGGGCTCGCCA
GTTGGCAAGAAGAAAGCAACTGCTGAGGACCGTAAGGCGTGCGAGGAGGA
TGCAGGCGCCCATGATTCTGCAATCAGGTCCGACAAAGCAAGGGAGCGCA
TGCAGCGCGCTCCTTTAAAGGGAGCAAGTGCCGCTGCGACGGCGGGAAGA
GGAGGAGGGCGGCGAGAGCGACGCCGGCGCCGATTACGGCGCTGACGAGG
AGGCTGCTGCTGGCGCCGATGCCAGCGCCGCCGCCGGTTTGAGGGCAAAG
CCTCCAGCGGGGGTGCGCGGCGCCGGTAAAAGTGCCAAGCCCAAGACATC
GCCGTCGCAGGAGTCCATCAAAGCCCTGCTAAAGGACAAGAAGCTCCAAG
ACGAGGGCCTTCATCTCGACGCCGCGAACAAGGGCAGAGTCCACTGCACA
TTCTGCAAGGGCAGCGTGCAAGGCACCAGGCACGAGGTGAAACATCACAT
CAAGACGGACAAGCACAAGGTGCAAAAGGGCAATCATACTCTCAAGGAGG
CGGCGAACGAGACGCTAAACAATCACATGCTGGAGCTGAAGAAGCAGCTT
GTATCCGGCTCGTCGCTGACGCCCAACACCATTAAGCTGCGGATGCGTGT
CGTGCAGGTCTTCGCCGAGTCTGGCACGCCGCTTCACCGGGTGCCCTACT
TCCGGCCGCTCTTCGAGGAGCTCTCGGGGCTCCGGCTGACGGACGTCTCC
GAGCTGCGCCGCATGGTGCCGGACCTGCTCAAAATCGAAGAGAATCGGCT
TTTCAAGGACTTGACCGGCAAGAAGGTCGCCGTCGTTTTTGACGGCACAA
CAAGGACACACGAGGTCTTTGCGGTCGTTGCGCGTTTTATGGATGCTGAT
GGCAGAGTGCAGCAACGGCTCATCGAGCAGGTATATTTGCCTTTAGTCTT
GCTTATGGTTGCTTGTGTTTCTTTGCCTCTTTTGAGGGATTTTCTGACTT
TTTGTTTGTCCTTCCTGTTTCCCTCCATGCAATTCCTTGTTGCCTGTTTC
ACTGCCGCCGTTTTGCTGCGAACTTTTCTCTGTGTTGGGCCTTCTACAAG
GCAGCCTTCAACGCCGGCGACGTCGCGAGGGTCATTGCATTCAAGCTGAC
GAAATGGGACGTCCAATACGATGACGTCGTCGCCTTTGTGAGCGACCGCT
GCGCCACCAATCTTGCCGCTATTGGGGCTCTTAAGCCCTTCTACAGTAGC
GCCATGATGATCGGGTGTGAGTCGCACACGTTCGACAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5299:2126..3714+

>mRNA_P-wetherbeei_contig5299.1.1 ID=mRNA_P-wetherbeei_contig5299.1.1|Name=mRNA_P-wetherbeei_contig5299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig5299:2126..3714+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGCTGAAGAAGCAGCTTGTATCCGGCTCGTCGCTGACGCCCAA
CACCATTAAGCTGCGGATGCGTGTCGTGCAGGTCTTCGCCGAGTCTGGCA
CGCCGCTTCACCGGGTGCCCTACTTCCGGCCGCTCTTCGAGGAGCTCTCG
GGGCTCCGGCTGACGGACGTCTCCGAGCTGCGCCGCATGGTGCCGGACCT
GCTCAAAATCGAAGAGAATCGGCTTTTCAAGGACTTGACCGGCAAGAAGG
TCGCCGTCGTTTTTGACGGCACAACAAGGACACACGAGGTCTTTGCGGTC
GTTGCGCGTTTTATGGATGCTGATGGCAGAGTGCAGCAACGGCTCATCGA
GCAGGTATATTTGCCTTTAGCAGCCTTCAACGCCGGCGACGTCGCGAGGG
TCATTGCATTCAAGCTGACGAAATGGGACGTCCAATACGATGACGTCGTC
GCCTTTGTGAGCGACCGCTGCGCCACCAATCTTGCCGCTATTGGGGCTCT
TAAGCCCTTCTACAGTAGCGCCATGATGATCGGGTGTGAGTCGCACACGT
TCGACAAC
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