mRNA_P-wetherbeei_contig52986.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A7C4XND0_9HYPH (RNA polymerase subunit sigma-70 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XND0_9HYPH) HSP 1 Score: 304 bits (778), Expect = 3.810e-100 Identity = 135/181 (74.59%), Postives = 154/181 (85.08%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIG-RFGMHQFQEHLTDTRLFC 540
ISTEMEG+IGNILVIYDLK+P P EVSRWWMPGQHVA GE PTWKGY NRLHH +R +ELWAAVWNAGIRV+D+ DI P+ +G+Y+YHPPFPEPTHT+LKVPFPVAGRDIA+ DEEHDH G LHAGLWVFDV KRD+I+ L MFH+ E SP+++ G RFGMHQFQEHL DTRL+C
Sbjct: 178 ISTEMEGFIGNILVIYDLKNPNKPAEVSRWWMPGQHVAGGEKPTWKGYGNRLHHTMRCGNELWAAVWNAGIRVIDVSDITKPRTIGSYNYHPPFPEPTHTVLKVPFPVAGRDIAVACDEEHDHVPGQLHAGLWVFDVAKRDDIRPLGMFHLSELASPYTKSGHRFGMHQFQEHLEDTRLYC 358
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A1F4A3R3_9PROT (RNA polymerase subunit sigma-70 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4A3R3_9PROT) HSP 1 Score: 285 bits (729), Expect = 1.170e-92 Identity = 128/179 (71.51%), Postives = 145/179 (81.01%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIGRFGMHQFQEHLTDTRLF 537
ISTEMEGY+GNILVIYDL P P EVSRWW+PGQHVA GE PTW+ YKNRLHHALR DELWAAVWNAG+RV+D+ DIR P+ V Y+YHPPFPEPTHT+L VPFPVAGR IA+ DEEHDH G HAGLWVFDV +I+ LSMFHV E SP+S+ GRFG HQFQEHL+DT ++
Sbjct: 185 ISTEMEGYVGNILVIYDLAKPDAPQEVSRWWLPGQHVAGGETPTWESYKNRLHHALRSGDELWAAVWNAGLRVIDVSDIRRPRTVAEYNYHPPFPEPTHTVLPVPFPVAGRRIAVAVDEEHDHIPGQPHAGLWVFDVSDLADIRPLSMFHVGEMDSPWSRTGRFGAHQFQEHLSDTLVY 363
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A6I7P5N7_9PROT (RNA polymerase subunit sigma-70 n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P5N7_9PROT) HSP 1 Score: 281 bits (720), Expect = 1.990e-91 Identity = 123/179 (68.72%), Postives = 142/179 (79.33%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIGRFGMHQFQEHLTDTRLF 537
ISTEMEGY+GNILVIYDL DP P EVSRWWMPGQHVA GE PTW GY +RLHH LRH DEL+AAVW AG R++D+KDI P +GA+DYHPPFPEPTHT ++VPFPVAGR +A+ DEEH HT G LH GLWVFDV I+ + M+H+ ER SPF + GRFG HQFQEH+ DTRL+
Sbjct: 177 ISTEMEGYVGNILVIYDLADPTRPQEVSRWWMPGQHVAGGETPTWSGYSHRLHHTLRHGDELYAAVWYAGCRIIDVKDITKPTTIGAFDYHPPFPEPTHTFMRVPFPVAGRTLAVAVDEEHAHTPGQLHGGLWVFDVADPANIQHVGMWHLSERASPFVEHGRFGAHQFQEHMKDTRLY 355
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: W9HA84_9PROT (Uncharacterized protein n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9HA84_9PROT) HSP 1 Score: 276 bits (706), Expect = 3.170e-89 Identity = 123/181 (67.96%), Postives = 141/181 (77.90%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIG-RFGMHQFQEHLTDTRLFC 540
ISTEM+GY+GNILV+YD+ DPA PTEVSRWWMPGQHVA GE P W G +NRLHHALR DELWA+VW AG+RV+DI D+ P+ +GAYDYHPPFPEPTHTI VP GR IA+ DEEHDHT G LH GLW FDVE R +IK + MFH+ E SPFS+IG RFG HQFQE +T L+C
Sbjct: 183 ISTEMDGYVGNILVVYDIADPAQPTEVSRWWMPGQHVAGGETPFWSGQRNRLHHALRFGDELWASVWYAGLRVIDISDVTKPRTIGAYDYHPPFPEPTHTIAPVPVKWKGRQIAVAVDEEHDHTPGQLHGGLWFFDVEDRTDIKPIGMFHLSELDSPFSRIGARFGAHQFQERVTGDTLYC 363
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A1F4DGU0_9PROT (RNA polymerase subunit sigma-70 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 TaxID=1797498 RepID=A0A1F4DGU0_9PROT) HSP 1 Score: 276 bits (705), Expect = 4.900e-89 Identity = 125/179 (69.83%), Postives = 144/179 (80.45%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIGRFGMHQFQEHLTDTRLF 537
ISTEMEGY+GNILVIYDL P P EVSRWW+PGQHVA GE+PTW+ YKNRLHHALR DELWAAVWNAG+RV+DI DIR+P+ VG Y+YHPPFPEPTHT+L V PVAGR IA+ DEEH+H G HAGLWVFDV I+ LS+F V E SP+S+ GRFG HQFQEHL+DT ++
Sbjct: 185 ISTEMEGYVGNILVIYDLAKPEAPEEVSRWWLPGQHVAGGEMPTWEAYKNRLHHALRTGDELWAAVWNAGLRVIDISDIRHPRTVGEYNYHPPFPEPTHTVLPVRIPVAGRRIAVAVDEEHEHIPGQPHAGLWVFDVTDLGNIRPLSLFQVSELDSPWSRRGRFGAHQFQEHLSDTLVY 363
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A541BYC9_9PROT (RNA polymerase subunit sigma-70 n=2 Tax=Elioraea sp. Yellowstone TaxID=2592070 RepID=A0A541BYC9_9PROT) HSP 1 Score: 271 bits (694), Expect = 1.880e-87 Identity = 120/180 (66.67%), Postives = 140/180 (77.78%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIG-RFGMHQFQEHLTDTRLF 537
ISTEMEGY+GNILVIYD++DPA P EV RWWMPGQH+A GE P+W G ++RLHHALRH D L+AAVW AG R++DI DI P+ +G Y YHPPFPEPTHT L+VPFPV GR +A+ DEEHDH G LH GLWVFDV +I+ +SMFH+ E SP+ Q G RFG HQFQE L DTRLF
Sbjct: 180 ISTEMEGYVGNILVIYDMRDPARPEEVGRWWMPGQHIAGGETPSWPGQQHRLHHALRHGDRLYAAVWYAGCRIIDISDIARPRTIGEYRYHPPFPEPTHTFLRVPFPVKGRTLAVAVDEEHDHVPGQLHGGLWVFDVADETDIRPVSMFHLSELASPYVQAGGRFGAHQFQERLADTRLF 359
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: UPI00062B9BBF (DNA-directed RNA polymerase sigma-70 factor n=1 Tax=Microvirga massiliensis TaxID=1033741 RepID=UPI00062B9BBF) HSP 1 Score: 268 bits (684), Expect = 5.740e-86 Identity = 117/180 (65.00%), Postives = 139/180 (77.22%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIGRFGMHQFQEHLTDTRLFC 540
ISTEMEG++GNILV+YD+ DP+ PTEVSRWWMPGQ+ A GE P WKG +RLHHA+R DELWAAVW AGIRV+D +DI N + G ++YHPPFPEPTHT++ VP GR +A+ DEEHDH G LH GLW+ DVE R EIK L MFH+ E SPFS+IGRFG HQFQEH+ RL+C
Sbjct: 179 ISTEMEGFLGNILVVYDIADPSRPTEVSRWWMPGQNTARGETPHWKGLSHRLHHAMRFGDELWAAVWYAGIRVIDARDITNLRTAGEFNYHPPFPEPTHTVVPVPVRWQGRQVAVAVDEEHDHRKGQLHGGLWLLDVENRSEIKPLGMFHLSELDSPFSRIGRFGAHQFQEHVKGDRLYC 358
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: A0A317FG51_9PROT (RNA polymerase subunit sigma-70 n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A317FG51_9PROT) HSP 1 Score: 265 bits (677), Expect = 7.110e-85 Identity = 119/180 (66.11%), Postives = 143/180 (79.44%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIG-RFGMHQFQEHLTDTRLF 537
ISTEMEGY+GNILVIYD+ DPA P EVSRW MPGQHVAAGE+PTW+G ++RLHH LRH D+L+AAVW AG R+LD+ DI PKVVG Y YHPPFPEPTHT ++VPF + GRDIA+ DEEH+H G LH GLWVFDV +I+ LSM+H+ E +P+ + G RFG HQFQEH+ DT L+
Sbjct: 181 ISTEMEGYVGNILVIYDIADPAKPREVSRWHMPGQHVAAGEVPTWQGQQHRLHHTLRHGDQLFAAVWYAGCRILDVSDITRPKVVGEYRYHPPFPEPTHTFMRVPFQIGGRDIAVAVDEEHEHVAGQLHGGLWVFDVTDPAKIQPLSMWHLTELDNPYVKAGGRFGAHQFQEHMEDTCLY 360
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: UPI0018731C07 (RNA polymerase subunit sigma-70 n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018731C07) HSP 1 Score: 258 bits (658), Expect = 5.350e-82 Identity = 122/181 (67.40%), Postives = 141/181 (77.90%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQI-GRFGMHQFQEHLTDTRLFC 540
ISTEMEGY+GNILVIYDLKDPA+P EVSRW MPGQH+AAGE PTW+GYKNRLHHALR DE+WA+VW+AG RVLD+ DI P+ V ++DYHPPFPEPTHTIL V VAGR IA+ DEEHDH G LHA LWVFDV D I ALS F V E SP+++ GRFG HQF+E L + ++
Sbjct: 181 ISTEMEGYLGNILVIYDLKDPADPQEVSRWHMPGQHIAAGEKPTWQGYKNRLHHALRVGDEMWASVWHAGFRVLDVSDITRPRTVASHDYHPPFPEPTHTILPVAGTVAGRRIAVAVDEEHDHVAGRLHAFLWVFDVTDFDNITALSAFDVSELDSPWARSPGRFGAHQFREKLDEPLVYA 361
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Match: UPI001666D717 (RNA polymerase subunit sigma-70 n=1 Tax=Alsobacter metallidurans TaxID=340221 RepID=UPI001666D717) HSP 1 Score: 255 bits (652), Expect = 3.730e-81 Identity = 116/180 (64.44%), Postives = 135/180 (75.00%), Query Frame = 1
Query: 1 ISTEMEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHALRHKDELWAAVWNAGIRVLDIKDIRNPKVVGAYDYHPPFPEPTHTILKVPFPVAGRDIAIGADEEHDHTYGNLHAGLWVFDVEKRDEIKALSMFHVPERMSPFSQIGRFGMHQFQEHLTDTRLFC 540
ISTEMEGY GNILVIYD+++P P EVSRWWMPGQH A GE P W+G NRLHHA+R DELWAAVW AG+R +DI DIRNP+ V ++YHPP PEPTHTIL P+ GR IA+G DEEHDHT G HA LW+FDV E + +S FHV E SP+++ GRFG HQFQEH+ T LFC
Sbjct: 179 ISTEMEGYRGNILVIYDIRNPERPAEVSRWWMPGQHEAGGETPFWRGESNRLHHAMRAGDELWAAVWYAGVRRIDISDIRNPRTVAEFNYHPPTPEPTHTILPALTPIGGRRIAVGVDEEHDHTPGQPHAHLWIFDVSD-GEFRPISTFHVSELDSPYAREGRFGAHQFQEHIDGTLLFC 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52986.1.1 >prot_P-wetherbeei_contig52986.1.1 ID=prot_P-wetherbeei_contig52986.1.1|Name=mRNA_P-wetherbeei_contig52986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp MEGYIGNILVIYDLKDPANPTEVSRWWMPGQHVAAGEIPTWKGYKNRLHHback to top mRNA from alignment at P-wetherbeei_contig52986:2..541- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52986.1.1 ID=mRNA_P-wetherbeei_contig52986.1.1|Name=mRNA_P-wetherbeei_contig52986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52986:2..541- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52986:2..541- >mRNA_P-wetherbeei_contig52986.1.1 ID=mRNA_P-wetherbeei_contig52986.1.1|Name=mRNA_P-wetherbeei_contig52986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig52986:2..541- (Phaeothamnion wetherbeei SAG_119_79)back to top |