mRNA_P-wetherbeei_contig52959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52959.1.1
Unique NamemRNA_P-wetherbeei_contig52959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7W0AAM6_9CHLR (DedA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0AAM6_9CHLR)

HSP 1 Score: 140 bits (354), Expect = 3.410e-40
Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKRN 300
            D D ANAWFD H   AV +CR+VPIVRSL+S+PAG+RRM L+PFI YTA+G+G+WNS+LI AGW LGDNWE V   V YL Y + VA+I A++++IWK+ 
Sbjct:   78 DLDSANAWFDHHGYKAVFLCRMVPIVRSLVSLPAGLRRMNLVPFIAYTAIGSGLWNSLLIVAGWWLGDNWEDVSHLVDYLDYPMYVAIIGALIWFIWKKK 177          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7V9ALU6_9CHLR (DedA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9ALU6_9CHLR)

HSP 1 Score: 140 bits (354), Expect = 6.740e-40
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKRNPFK 309
            DFDKAN WFD + GLAV+ICR+VPIVRSL+SIPAG+RRM L  FI YTA+G+G+WNSIL+ AGW LGDNWE V   V YL+Y VI+ V+    +++WKR   K
Sbjct:  104 DFDKANGWFDRYGGLAVMICRLVPIVRSLVSIPAGLRRMNLTTFIIYTAIGSGIWNSILVIAGWWLGDNWEEVGGVVDYLEYPVILGVLGFGAWFLWKRRSAK 206          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A6J4VDW2_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VDW2_9CHLR)

HSP 1 Score: 139 bits (350), Expect = 2.430e-39
Identity = 58/99 (58.59%), Postives = 79/99 (79.80%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKR 297
            D D+A+ WFD +  LAVL+CR VP+VRSL+SIPAG R+M L+PF+ YT +G+ +WN+ LIGAGWALGDNWE+V +YVGY QYVVI  +   V+++ W++
Sbjct:  101 DIDRADDWFDRYSTLAVLVCRCVPLVRSLVSIPAGFRQMSLVPFLIYTTIGSAIWNAALIGAGWALGDNWESVGDYVGYFQYVVIALIAVGVLWFFWRK 199          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A350T6B2_9CHLR (Alkaline phosphatase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A350T6B2_9CHLR)

HSP 1 Score: 133 bits (334), Expect = 4.690e-37
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIW-KRNPFKS 312
            D DKAN WFD H G AV I RV+P+VRSLISIPAG+ RMPLL FI YTA+G+ VWN  LIGAGW LG+ WE V   V Y QY VI+ ++ AV ++ W +RN +++
Sbjct:   93 DLDKANGWFDRHGGKAVTIGRVIPVVRSLISIPAGVTRMPLLSFIIYTAIGSTVWNGALIGAGWILGNQWERVSGAVNYFQYFVILVILVAVTWFAWSRRNEWRT 197          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7W3J6V6_9MICO (Membrane protein DedA with SNARE-associated domain n=3 Tax=Promicromonospora TaxID=43676 RepID=A0A7W3J6V6_9MICO)

HSP 1 Score: 132 bits (332), Expect = 1.310e-36
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWK--RNPFKSR 315
            D DKA AWF++H   AVLI RV+PIVRSLISIPAG+ RMP+  F+ +T +G+GVWN++L+GAG+ LGD W  VEE VG  Q VVIVAV+  +V+W++K  RNP + +
Sbjct:  103 DVDKAEAWFNKHGDWAVLIGRVIPIVRSLISIPAGVERMPMTRFLLFTTIGSGVWNTLLVGAGYLLGDQWHIVEESVGVFQKVVIVAVVLLIVWWLFKTLRNPDRPK 209          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7V9KIZ8_9CHLR (DedA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9KIZ8_9CHLR)

HSP 1 Score: 132 bits (331), Expect = 1.900e-36
Identity = 58/105 (55.24%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKRNPFKSR 315
            D D AN WFD H G AVL+CR++PIVRS+IS+PAG+R+M L  FI YTA+G+G+WNS+L+  GW LG+NWEAV EY   L+Y V++ ++  +  +IWKR   K R
Sbjct:  100 DLDLANGWFDRHGGKAVLLCRLLPIVRSIISVPAGLRQMSLPVFILYTAIGSGLWNSVLVLGGWWLGENWEAVGEYTSLLEYPVMILLVLGIALYIWKRVLAKPR 204          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A8F4FZF5_9ACTN (DedA family protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FZF5_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 2.910e-36
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKR 297
            D D+ANAWFD     AVLICR +P++RSL+S+PAG RRM  LPF  YT +G+  WN +LIGAG+ALGDNWE V E+V  LQYVV+  ++AA+ +W W R
Sbjct:  128 DLDRANAWFDRRSTHAVLICRCIPLIRSLVSVPAGFRRMRALPFTLYTLIGSLAWNLVLIGAGYALGDNWEQVGEHVSRLQYVVVAGLLAAITWWAWTR 226          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7V9GES4_9ACTN (DedA family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GES4_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 5.170e-36
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKR 297
            D D+A  WFD   G AVL+CR VP++RSL+SIPAG RRMP   F  YTA+G+ VWNS LIGAG+ALG+ W++VE Y+GY+Q +V+  + AAV +++W R
Sbjct:   28 DLDRAEGWFDRRSGSAVLLCRCVPLIRSLVSIPAGFRRMPFAKFTIYTAVGSLVWNSALIGAGFALGERWDSVEGYLGYVQTIVLAVLAAAVAWFVWTR 126          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A7K0X8P5_9ACTN (DedA family protein n=5 Tax=root TaxID=1 RepID=A0A7K0X8P5_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 6.190e-35
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKR 297
            D  +A +WFD H   AVLICR +P++RSL+SIPAG RRM  + F  YTALG+ VWN  LIGAG+ALGDNWE V E++   QYV+I A+ AA  +WIW R
Sbjct:  110 DLTRAESWFDNHSKSAVLICRCIPLIRSLVSIPAGFRRMEPVTFTLYTALGSAVWNVTLIGAGYALGDNWEQVGEWISTFQYVIIAAIAAAAGWWIWTR 208          
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Match: A0A6G1SYJ2_9CHLR (DedA family protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6G1SYJ2_9CHLR)

HSP 1 Score: 127 bits (319), Expect = 1.260e-34
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTALGAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKR 297
            D D+A  WFD H   AVL+CR +P+VRSLIS+PAG +RMPL PF  YTA+G+  WNSI +  G+ LG+ WE + EY  YLQY+V+    A V Y++W+R
Sbjct:  101 DMDRAEGWFDHHSNTAVLVCRCIPLVRSLISLPAGFQRMPLAPFTLYTAIGSLAWNSIFVTGGYLLGERWETMAEYADYLQYLVLATTAAGVAYFVWRR 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0AAM6_9CHLR3.410e-4062.00DedA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7V9ALU6_9CHLR6.740e-4063.11DedA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A6J4VDW2_9CHLR2.430e-3958.59Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A350T6B2_9CHLR4.690e-3759.05Alkaline phosphatase n=1 Tax=Chloroflexi bacterium... [more]
A0A7W3J6V6_9MICO1.310e-3657.94Membrane protein DedA with SNARE-associated domain... [more]
A0A7V9KIZ8_9CHLR1.900e-3655.24DedA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A8F4FZF5_9ACTN2.910e-3658.59DedA family protein n=1 Tax=Aquihabitans sp. G128 ... [more]
A0A7V9GES4_9ACTN5.170e-3656.57DedA family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A7K0X8P5_9ACTN6.190e-3558.59DedA family protein n=5 Tax=root TaxID=1 RepID=A0A... [more]
A0A6G1SYJ2_9CHLR1.260e-3453.54DedA family protein n=1 Tax=Dehalococcoidia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52959contigP-wetherbeei_contig52959:214..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1125971.ASJB01000071_gene169
PFAMsSNARE_assoc
Model size327
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.41e-31
EggNOG OGsCOG0586@1|root,COG0586@2|Bacteria,2GN43@201174|Actinobacteria,4E2S2@85010|Pseudonocardiales
DescriptionPFAM SNARE associated Golgi protein
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.3888044-CDS-P-wetherbeei_contig52959:213..5401683186793.3888044-CDS-P-wetherbeei_contig52959:213..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52959 214..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52959.1.1prot_P-wetherbeei_contig52959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52959 214..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52959.1.1

>prot_P-wetherbeei_contig52959.1.1 ID=prot_P-wetherbeei_contig52959.1.1|Name=mRNA_P-wetherbeei_contig52959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
DFDKANAWFDEHEGLAVLICRVVPIVRSLISIPAGIRRMPLLPFIGYTAL
GAGVWNSILIGAGWALGDNWEAVEEYVGYLQYVVIVAVIAAVVYWIWKRN
PFKSRTPA*
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mRNA from alignment at P-wetherbeei_contig52959:214..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52959.1.1 ID=mRNA_P-wetherbeei_contig52959.1.1|Name=mRNA_P-wetherbeei_contig52959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig52959:214..540- (Phaeothamnion wetherbeei SAG_119_79)
GACTTCGACAAGGCGAACGCCTGGTTCGACGAGCACGAGGGGCTGGCGGT GCTGATCTGCCGCGTCGTCCCGATCGTCCGCAGCCTGATCTCGATCCCGG CCGGCATCCGCCGCATGCCGCTGCTGCCCTTCATCGGCTACACCGCCCTC GGCGCCGGCGTCTGGAACAGCATCCTGATCGGCGCAGGCTGGGCGCTCGG TGACAACTGGGAGGCGGTGGAGGAGTACGTCGGCTACCTCCAGTACGTCG TGATCGTGGCCGTCATCGCCGCGGTCGTCTACTGGATCTGGAAGCGCAAC CCCTTCAAGTCCCGCACCCCCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52959:214..540-

>mRNA_P-wetherbeei_contig52959.1.1 ID=mRNA_P-wetherbeei_contig52959.1.1|Name=mRNA_P-wetherbeei_contig52959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig52959:214..540- (Phaeothamnion wetherbeei SAG_119_79)
GACTTCGACAAGGCGAACGCCTGGTTCGACGAGCACGAGGGGCTGGCGGT
GCTGATCTGCCGCGTCGTCCCGATCGTCCGCAGCCTGATCTCGATCCCGG
CCGGCATCCGCCGCATGCCGCTGCTGCCCTTCATCGGCTACACCGCCCTC
GGCGCCGGCGTCTGGAACAGCATCCTGATCGGCGCAGGCTGGGCGCTCGG
TGACAACTGGGAGGCGGTGGAGGAGTACGTCGGCTACCTCCAGTACGTCG
TGATCGTGGCCGTCATCGCCGCGGTCGTCTACTGGATCTGGAAGCGCAAC
CCCTTCAAGTCCCGCACCCCCGCCTGA
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