mRNA_P-wetherbeei_contig52954.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52954.2.1
Unique NamemRNA_P-wetherbeei_contig52954.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A2P7S250_9HYPH (Uncharacterized protein n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A2P7S250_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 1.910e-65
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            L VLL KW+DLMVVFFDE HAR++G+NP  +K++FF LLSA TVAALQTVGA LVIA+VVTPGATAYLLTDRFPRLIA+SVAIGAGT F GAY SYF+DGATGG+IVV QTL+FLAAF  APKHG+LAARRR REA
Sbjct:  146 LAVLLAKWKDLMVVFFDENHARSVGLNPDLLKIVFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIALSVAIGAGTSFFGAYASYFLDGATGGIIVVAQTLIFLAAFFLAPKHGMLAARRRAREA 281          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A258LQU4_9HYPH (Uncharacterized protein n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A258LQU4_9HYPH)

HSP 1 Score: 208 bits (530), Expect = 3.830e-65
Identity = 106/136 (77.94%), Postives = 122/136 (89.71%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            L +LLVKW+DLMV FFDE+HAR IG+NP  +K+LFF LLSA+TVAALQTVGA LV+A+VVTPGATAYLLTDRFPRLIA+SVAIGAGT F+GAY SYF+DGATGG+I VLQTL+FLAAF+ APKHG+LAARRR   A
Sbjct:  146 LAILLVKWKDLMVTFFDESHARTIGLNPTALKLLFFTLLSASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFPRLIALSVAIGAGTAFVGAYASYFLDGATGGIIGVLQTLIFLAAFLLAPKHGLLAARRRAARA 281          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A4V2UYC9_9HYPH (Manganese/iron transport system permease protein n=1 Tax=Aquabacter spiritensis TaxID=933073 RepID=A0A4V2UYC9_9HYPH)

HSP 1 Score: 207 bits (528), Expect = 7.700e-65
Identity = 106/135 (78.52%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVRE 405
            L +LL+KW+DLMV FFDE HAR IG+NPL +K +FF LLSA+TVAALQTVGA LV+A+VVTPGATAYLLTDRFPRLIA+SVAIGA T F GAYISYF+DGATGGVIVVLQTLLFL AFV+APKHG++AARRR  +
Sbjct:  145 LAILLLKWKDLMVTFFDENHARTIGLNPLLLKAMFFTLLSASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFPRLIALSVAIGAMTSFFGAYISYFLDGATGGVIVVLQTLLFLTAFVFAPKHGLIAARRRAAD 279          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A1I6ZVZ7_9HYPH (Manganese/iron transport system permease protein n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A1I6ZVZ7_9HYPH)

HSP 1 Score: 207 bits (527), Expect = 1.030e-64
Identity = 108/136 (79.41%), Postives = 122/136 (89.71%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            L +LL KW+DLMV FFDE HAR+IG+NP  +KVLFF LLSA+TVAALQTVGA LVIA+VVTPGATAYLLTDRFPRLIA SVAIGA T F+GAY SYF+DGATGG+IVVLQTL+FL AFV+APKHG+LAARR+ REA
Sbjct:  145 LAILLAKWKDLMVAFFDENHARSIGLNPDWLKVLFFTLLSASTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIATSVAIGAVTSFVGAYASYFLDGATGGIIVVLQTLIFLTAFVFAPKHGMLAARRKAREA 280          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A833H7V9_9HYPH (Metal ABC transporter permease n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A833H7V9_9HYPH)

HSP 1 Score: 207 bits (527), Expect = 1.120e-64
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            L VLLVKWRDLMVVFFDE HAR+IGINP  +K++FF LLSA TVAALQTVGA LVIA+VVTPGATAYLLTDRFPRLI +SVAIG  T F GAY SYF+DGATGGVIVVLQT +FLAAFV+APKHG+LAARRR R A
Sbjct:  146 LAVLLVKWRDLMVVFFDENHARSIGINPDRLKIVFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIGISVAIGTLTSFFGAYASYFLDGATGGVIVVLQTAIFLAAFVFAPKHGMLAARRRARAA 281          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A7W0MQA5_9RHOB (Metal ABC transporter permease n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7W0MQA5_9RHOB)

HSP 1 Score: 207 bits (526), Expect = 1.330e-64
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 1
Query:    7 VLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            VLL KWRDLMVVFFDE HAR+IG+ P  +KVLFFALLSA+TVAALQTVGA LVIALVVTPGATAYLLTDRF RLIA++  IGAGTC +GAY SYF+DGATGG+IVVLQTL+FLAAFV+APKHG+LAA RR REA
Sbjct:  147 VLLAKWRDLMVVFFDENHARSIGLRPRAMKVLFFALLSASTVAALQTVGAFLVIALVVTPGATAYLLTDRFERLIALAAGIGAGTCAVGAYASYFLDGATGGIIVVLQTLVFLAAFVFAPKHGMLAAWRRGREA 280          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A657LNK5_9HYPH (Uncharacterized protein n=1 Tax=Pararhizobium antarcticum TaxID=1798805 RepID=A0A657LNK5_9HYPH)

HSP 1 Score: 206 bits (525), Expect = 2.060e-64
Identity = 104/134 (77.61%), Postives = 123/134 (91.79%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVR 402
            L +LLVKW+DLMVVFFDETHAR+IG+NP  +K+LFF LLSA+TVAALQTVGA LVI +VVTPGATAYLLTDRFPRL+ ++VAIGA T F+GAY+SYF+DGATGG+IV LQTL+FLAAF++APKHG+LAARRR R
Sbjct:  145 LAILLVKWKDLMVVFFDETHARSIGLNPTALKILFFTLLSASTVAALQTVGAFLVICMVVTPGATAYLLTDRFPRLLIIAVAIGAITSFVGAYVSYFLDGATGGIIVCLQTLVFLAAFLFAPKHGMLAARRRAR 278          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: UPI00191899B3 (metal ABC transporter permease n=1 Tax=Rhizobium sp. KVB221 TaxID=2801340 RepID=UPI00191899B3)

HSP 1 Score: 206 bits (525), Expect = 2.130e-64
Identity = 106/134 (79.10%), Postives = 121/134 (90.30%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVR 402
            L +LLVKW+DLMVVFFDE HAR IG+NP+ +K++FF LLSA TVAALQTVGA LVIALVVTPGATAYLLTDRFPRL+ +SVAIG+ T F GAYISYF+DGATGGVIVVLQTL+FLAAF +APKHG+LAARR+ R
Sbjct:  146 LAILLVKWKDLMVVFFDENHARTIGLNPVLLKIMFFTLLSACTVAALQTVGAFLVIALVVTPGATAYLLTDRFPRLLLISVAIGSVTSFFGAYISYFLDGATGGVIVVLQTLIFLAAFFFAPKHGMLAARRKAR 279          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: A0A7Z0S877_9BURK (Metal ABC transporter permease n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7Z0S877_9BURK)

HSP 1 Score: 206 bits (524), Expect = 3.100e-64
Identity = 104/137 (75.91%), Postives = 124/137 (90.51%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREAQ 411
            L VLLVKW+DLMVVFFDE HAR++GINP+ +KVLFF+LLSA TVAA+QTVGA LV+A+VVTPGATAYLLTDRFPRL+A+SVAIGA + F+GAY SYF+DGATGG+IV+LQTL FL AFV+APKHG+LAARRR  + +
Sbjct:  145 LAVLLVKWKDLMVVFFDENHARSVGINPVFMKVLFFSLLSACTVAAMQTVGAFLVVAMVVTPGATAYLLTDRFPRLLAISVAIGAASSFVGAYASYFLDGATGGIIVLLQTLCFLTAFVFAPKHGLLAARRRTAKGE 281          
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Match: UPI000690BA20 (metal ABC transporter permease n=1 Tax=Afifella pfennigii TaxID=209897 RepID=UPI000690BA20)

HSP 1 Score: 206 bits (525), Expect = 3.410e-64
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    1 LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTVGACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDGATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREA 408
            L +LL KW+DLMVVFFDE+HAR+IGINP  ++++FF LLSA+TVAALQTVGA LVIA+VVTPGATAYLLTDRFPRLIA+SVAIGA T F+GAY SYF+DGATGG+I+VLQTL+FL AFV APKHG+LA+RRR REA
Sbjct:  145 LAILLAKWKDLMVVFFDESHARSIGINPGLMRLVFFTLLSASTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIAISVAIGAATSFIGAYSSYFLDGATGGIIIVLQTLVFLIAFVVAPKHGLLASRRRAREA 280          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52954.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P7S250_9HYPH1.910e-6579.41Uncharacterized protein n=4 Tax=Phyllobacteriaceae... [more]
A0A258LQU4_9HYPH3.830e-6577.94Uncharacterized protein n=5 Tax=Hyphomicrobiales T... [more]
A0A4V2UYC9_9HYPH7.700e-6578.52Manganese/iron transport system permease protein n... [more]
A0A1I6ZVZ7_9HYPH1.030e-6479.41Manganese/iron transport system permease protein n... [more]
A0A833H7V9_9HYPH1.120e-6480.88Metal ABC transporter permease n=2 Tax=Hyphomicrob... [more]
A0A7W0MQA5_9RHOB1.330e-6481.34Metal ABC transporter permease n=1 Tax=Rhodobacter... [more]
A0A657LNK5_9HYPH2.060e-6477.61Uncharacterized protein n=1 Tax=Pararhizobium anta... [more]
UPI00191899B32.130e-6479.10metal ABC transporter permease n=1 Tax=Rhizobium s... [more]
A0A7Z0S877_9BURK3.100e-6475.91Metal ABC transporter permease n=1 Tax=Alcaligenac... [more]
UPI000690BA203.410e-6477.94metal ABC transporter permease n=1 Tax=Afifella pf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52954contigP-wetherbeei_contig52954:129..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1122132.AQYH01000019_gene364
Preferred namesitC
PFAMsABC-3
Model size414
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K11605
KEGG TC3.A.1.15.7,3.A.1.15.9
KEGG Pathwayko02010,map02010
KEGG ModuleM00317
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.1e-66
EggNOG OGsCOG1108@1|root,COG1108@2|Bacteria,1MY5X@1224|Proteobacteria,2TQXB@28211|Alphaproteobacteria,4B7X2@82115|Rhizobiaceae
DescriptionABC-type Mn2 Zn2 transport systems, permease components
Cds size414
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.3331866-CDS-P-wetherbeei_contig52954:128..5421683186793.3331866-CDS-P-wetherbeei_contig52954:128..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52954 129..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52954.2.1prot_P-wetherbeei_contig52954.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52954 129..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52954.2.1

>prot_P-wetherbeei_contig52954.2.1 ID=prot_P-wetherbeei_contig52954.2.1|Name=mRNA_P-wetherbeei_contig52954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
LGVLLVKWRDLMVVFFDETHARAIGINPLPVKVLFFALLSAATVAALQTV
GACLVIALVVTPGATAYLLTDRFPRLIAMSVAIGAGTCFLGAYISYFMDG
ATGGVIVVLQTLLFLAAFVWAPKHGILAARRRVREAQ*
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mRNA from alignment at P-wetherbeei_contig52954:129..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52954.2.1 ID=mRNA_P-wetherbeei_contig52954.2.1|Name=mRNA_P-wetherbeei_contig52954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig52954:129..542- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGGTGCTGCTCGTGAAGTGGCGGGATCTGATGGTCGTATTCTTCGA CGAGACGCATGCGCGGGCTATCGGGATCAATCCGCTGCCGGTCAAGGTGC TGTTCTTCGCGCTGTTGTCGGCCGCGACGGTTGCAGCACTACAGACGGTC GGCGCGTGCCTGGTAATCGCGCTCGTCGTAACACCCGGCGCGACGGCCTA TCTGCTGACCGACCGCTTTCCGCGTCTCATCGCGATGTCCGTCGCGATTG GCGCGGGCACCTGCTTCCTGGGCGCGTACATCAGCTATTTCATGGATGGG GCGACGGGTGGTGTAATCGTGGTGCTGCAGACGCTGCTGTTCCTGGCGGC GTTCGTGTGGGCGCCCAAGCATGGGATACTGGCGGCCCGGCGGCGCGTGC GGGAGGCGCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52954:129..542-

>mRNA_P-wetherbeei_contig52954.2.1 ID=mRNA_P-wetherbeei_contig52954.2.1|Name=mRNA_P-wetherbeei_contig52954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig52954:129..542- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGGTGCTGCTCGTGAAGTGGCGGGATCTGATGGTCGTATTCTTCGA
CGAGACGCATGCGCGGGCTATCGGGATCAATCCGCTGCCGGTCAAGGTGC
TGTTCTTCGCGCTGTTGTCGGCCGCGACGGTTGCAGCACTACAGACGGTC
GGCGCGTGCCTGGTAATCGCGCTCGTCGTAACACCCGGCGCGACGGCCTA
TCTGCTGACCGACCGCTTTCCGCGTCTCATCGCGATGTCCGTCGCGATTG
GCGCGGGCACCTGCTTCCTGGGCGCGTACATCAGCTATTTCATGGATGGG
GCGACGGGTGGTGTAATCGTGGTGCTGCAGACGCTGCTGTTCCTGGCGGC
GTTCGTGTGGGCGCCCAAGCATGGGATACTGGCGGCCCGGCGGCGCGTGC
GGGAGGCGCAGTAG
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