mRNA_P-wetherbeei_contig5294.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5294.1.1
Unique NamemRNA_P-wetherbeei_contig5294.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A7S2BI44_9STRA (Transmembrane 9 superfamily member n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI44_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.500e-36
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDY WWWRSFLSSGS+A YLF+Y+VWYF SKLEITG VS+AIYFGYM I+AL FFLLTG IGFF+CFWFVRKIY AIKVD
Sbjct:  358 QLCNEDYQWWWRSFLSSGSAAIYLFLYAVWYFVSKLEITGFVSSAIYFGYMFIIALGFFLLTGAIGFFACFWFVRKIYGAIKVD 441
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: D7FKX0_ECTSI (Transmembrane 9 superfamily member n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.450e-36
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDYHWWWR+FLS+GSSA YLFMYSVWYF SKL+I+G VST++YFGYM ++ALTFFLLTG  GFF+CFWFVRKIY+AIKVD
Sbjct:  563 QLCNEDYHWWWRAFLSAGSSAGYLFMYSVWYFYSKLDISGFVSTSVYFGYMLVIALTFFLLTGSSGFFACFWFVRKIYSAIKVD 646
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A7S2B0N8_9STRA (Transmembrane 9 superfamily member n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0N8_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.930e-35
Identity = 67/84 (79.76%), Postives = 74/84 (88.10%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDYHWWWRSFLSSGS+A YL +Y+VWYF SKLEITG VS AIYFGYM I+++ FFLLTG IGFF+CFWFVRKIY AIKVD
Sbjct:  566 QLCNEDYHWWWRSFLSSGSAALYLMLYAVWYFISKLEITGVVSIAIYFGYMFIISVAFFLLTGAIGFFACFWFVRKIYGAIKVD 649
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A482S7N1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7N1_9ARCH)

HSP 1 Score: 132 bits (332), Expect = 8.990e-35
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDY WWWRSFLS+GSS  YLF+YS+WYF +KL ITG V T +YF YMA+V++TF L+TG IGFF+C WFVRKIY AIKVD
Sbjct:   34 QLCNEDYRWWWRSFLSAGSSGVYLFLYSLWYFVTKLNITGIVPTVLYFSYMAMVSITFALMTGSIGFFACLWFVRKIYGAIKVD 117
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A7S2WW63_9STRA (Transmembrane 9 superfamily member n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW63_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.760e-34
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDY WWWRSFLSSGS+A YLF+Y+VWYFASKLEI G VS+++YFGYM I+++ FFLLTGCIGF++CFWFVRKIY AIKVD
Sbjct:  564 QLCNEDYRWWWRSFLSSGSAALYLFLYAVWYFASKLEIQGFVSSSLYFGYMLIISVVFFLLTGCIGFWACFWFVRKIYGAIKVD 647
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A7S3M9A5_9STRA (Transmembrane 9 superfamily member n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9A5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.910e-34
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDY+WWWRSFLS+GSS  YLF+YSVWY+ASKL+I G V T +YF YM +V++TFFLLTG IGFF+C WFVRKIYAAIKVD
Sbjct:  251 QLCNEDYNWWWRSFLSAGSSGGYLFLYSVWYYASKLDIQGFVPTVLYFAYMGMVSVTFFLLTGSIGFFACLWFVRKIYAAIKVD 334
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: V4JWX3_EUTSA (Transmembrane 9 superfamily member (Fragment) n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JWX3_EUTSA)

HSP 1 Score: 124 bits (310), Expect = 2.770e-30
Identity = 53/84 (63.10%), Postives = 74/84 (88.10%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL +EDY+WWWR++L+SGSS+ YLF+YS++YF +KLEIT  VS  +YFGYM I++ +FF+LTG IGF++CFWFVRKIY+++K+D
Sbjct:  134 QLCSEDYNWWWRAYLTSGSSSVYLFLYSIFYFFTKLEITKLVSGTLYFGYMIIISYSFFVLTGSIGFYACFWFVRKIYSSVKID 217
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: N0GVY3_9CARY (Transmembrane 9 superfamily member (Fragment) n=26 Tax=Pentapetalae TaxID=1437201 RepID=N0GVY3_9CARY)

HSP 1 Score: 120 bits (301), Expect = 6.220e-30
Identity = 53/84 (63.10%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL  EDY+WWWRS+L++GSSA YLF+YS++YF +KLEIT  VS  +YFGYM I +  FF+LTG IGF++CFWFVR+IY+++K+D
Sbjct:   54 QLCGEDYYWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMLIGSYAFFVLTGTIGFYACFWFVRRIYSSVKID 137
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: F0YDA3_AURAN (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA3_AURAN)

HSP 1 Score: 121 bits (303), Expect = 6.330e-30
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL NEDY WWWRSFL SGS+AA LF+YSVWYF +KL+I+G + + +YFGYMA+ + TFFLL G IGFF+  WF  +IYAAIKVD
Sbjct:   78 QLRNEDYRWWWRSFLCSGSAAACLFLYSVWYFDAKLDISGGLPSLVYFGYMALASFTFFLLCGAIGFFAALWFNLQIYAAIKVD 161
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BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Match: A0A7J9CKA4_GOSGO (Transmembrane 9 superfamily member n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9CKA4_GOSGO)

HSP 1 Score: 124 bits (310), Expect = 8.280e-30
Identity = 54/84 (64.29%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  180 QLGNEDYHWWWRSFLSSGSSAAYLFMYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVRKIYAAIKVD 431
            QL +EDYHWWWRS+L++G SA YLF+YS++YF +KLEIT  VS  +YFGYM IV+  FF+LTG IGF++CFWFVR+IY+++K+D
Sbjct:  178 QLCSEDYHWWWRSYLTAGFSALYLFLYSIFYFFTKLEITKLVSGLLYFGYMVIVSYAFFVLTGTIGFYACFWFVRRIYSSVKID 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5294.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BI44_9STRA2.500e-3682.14Transmembrane 9 superfamily member n=1 Tax=Florenc... [more]
D7FKX0_ECTSI7.450e-3679.76Transmembrane 9 superfamily member n=2 Tax=Ectocar... [more]
A0A7S2B0N8_9STRA6.930e-3579.76Transmembrane 9 superfamily member n=1 Tax=Dictyoc... [more]
A0A482S7N1_9ARCH8.990e-3571.43Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2WW63_9STRA1.760e-3477.38Transmembrane 9 superfamily member n=1 Tax=Rhizoch... [more]
A0A7S3M9A5_9STRA4.910e-3475.00Transmembrane 9 superfamily member n=1 Tax=Spumell... [more]
V4JWX3_EUTSA2.770e-3063.10Transmembrane 9 superfamily member (Fragment) n=2 ... [more]
N0GVY3_9CARY6.220e-3063.10Transmembrane 9 superfamily member (Fragment) n=26... [more]
F0YDA3_AURAN6.330e-3066.67Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A7J9CKA4_GOSGO8.280e-3064.29Transmembrane 9 superfamily member n=3 Tax=Gossypi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5294contigP-wetherbeei_contig5294:2..1338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKX0
PFAMsEMP70
Model size1005
Max annot lvl2759|Eukaryota
KEGG koko:K17086
Hectar predicted targeting categorysignal anchor
Exons2
Evalue6.08e-24
EggNOG OGsKOG1278@1|root,KOG1278@2759|Eukaryota
Descriptionpositive regulation of protein exit from endoplasmic reticulum
Cds size180
COG categoryS
BRITEko00000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.1383822-UTR-P-wetherbeei_contig5294:1..2551683186793.1383822-UTR-P-wetherbeei_contig5294:1..255Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5294 2..255 +
1683186793.1725206-UTR-P-wetherbeei_contig5294:767..13381683186793.1725206-UTR-P-wetherbeei_contig5294:767..1338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5294 768..1338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.1492946-CDS-P-wetherbeei_contig5294:255..4261683186793.1492946-CDS-P-wetherbeei_contig5294:255..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5294 256..426 +
1683186793.1600711-CDS-P-wetherbeei_contig5294:758..7671683186793.1600711-CDS-P-wetherbeei_contig5294:758..767Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5294 759..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5294.1.1prot_P-wetherbeei_contig5294.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5294 256..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5294.1.1

>prot_P-wetherbeei_contig5294.1.1 ID=prot_P-wetherbeei_contig5294.1.1|Name=mRNA_P-wetherbeei_contig5294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MYSVWYFASKLEITGAVSTAIYFGYMAIVALTFFLLTGCIGFFSCFWFVR
KIYAAIKVD*
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mRNA from alignment at P-wetherbeei_contig5294:2..1338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5294.1.1 ID=mRNA_P-wetherbeei_contig5294.1.1|Name=mRNA_P-wetherbeei_contig5294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1337bp|location=Sequence derived from alignment at P-wetherbeei_contig5294:2..1338+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTTCGTCGCATCGTTAGAGGTTCTAGCTTAATTCATTCCTTTTTTTG
GCATCTCAAGCTGGCTTTGTCGAGTCTTCATTGCCTGCGTTGCGTGCTGC
ATCAATGTCGCCATGTCAACACATTTAAACCGCCAACTTTTGTCAATTAA
TTGCTTCAATCCACCTCACACGGCACGGCCAGCTGGGCAACGAGGATTAC
CACTGGTGGTGGCGGTCTTTCTTGAGTTCGGGCTCCTCGGCGGCATACCT
CTTCATGTACTCTGTCTGGTATTTCGCCAGCAAGTTGGAGATCACGGGGG
CGGTCTCCACCGCCATCTACTTCGGATACATGGCCATCGTCGCTTTGACA
TTCTTCCTCCTCACCGGCTGCATAGGCTTCTTCTCGTGCTTCTGGTTCGT
CCGCAAGATCTATGCCGCCATCAAGGTGCACTTTAACTGGATTGGATTTC
GCTCTGTCTGCCTGTTTTATCTCCAGTTTGCGCTCGTTCGCGTATTTGGC
TGGAATCAGAGGAAGGAAGCGATGAGGGTTTTGACGGAAAGCAGACATAT
TGATTTGCTGCTTCAGAGCGTTGACCTGATCATGTAAGACTGTAGCCGCT
GATCTGCTGTCATGTGCGAAACAACTGTAGATATTGCTTGACTTTGGTTC
TTTGCCCACACTTTTAACGTTGCGTGTCCGTTATGACTGAAGGGCGTCGT
TGCCTCCTTCTCCGCTGCTGCAATTTGCAATATAACTTTCAATGGTATCA
CCACCAGGTCGATTGAGGCGCAAGGAGCGTTGGAGAAGGCGACTCGCGGG
GTGGCGGCGACGGCTGCAGAGGGGGCAGTGACAGCTGGAGCAGCGCAGCA
GCAGTGGCTGCATTGGCACGGCAATGGCGACAGCAGTGGCCAGCAGCAGC
AGCAACACGCCAGCGGCGGCGGCGGCGTCACTGGCGGTGCAGGGCACGGT
CGCCGGTGCTCTGCATCTTTGCGGATCGGCGCTTCGTTAGACAATGGAGA
GGCCATTTCCAAATTAAGCATGGCTCATTTCTGGCAGCAAGCAACAATGT
CGTGATAGCGCCCGGGGATAAGCTGGTCAGCGCTCGCGCCCGGGGATAAG
CTGGTCAGCGCTCGCGCCAATTCCTTTGCGATTGCGGCGGGTTACCACCA
GCGGTTGACTGGCCAACGCCGGCTTGGCAGCTGCCGCCTGATGTAGTGAA
CGCGGCCGACACACCGGCGGTTGGCAATAGCACCGGCCGCTGTGCGGGCG
GATGGCGCACAGTGGCTTAGGGGCTCATTTTAGCTGCGAAGTAGCACCCT
CAGATAATGCAAAATACAACCAAGCGCACCTTGTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5294:2..1338+

>mRNA_P-wetherbeei_contig5294.1.1 ID=mRNA_P-wetherbeei_contig5294.1.1|Name=mRNA_P-wetherbeei_contig5294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig5294:2..1338+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACTCTGTCTGGTATTTCGCCAGCAAGTTGGAGATCACGGGGGCGGT
CTCCACCGCCATCTACTTCGGATACATGGCCATCGTCGCTTTGACATTCT
TCCTCCTCACCGGCTGCATAGGCTTCTTCTCGTGCTTCTGGTTCGTCCGC
AAGATCTATGCCGCCATCAAGGTCGATTGA
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