mRNA_P-wetherbeei_contig5293.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5293.1.1
Unique NamemRNA_P-wetherbeei_contig5293.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5293.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5293contigP-wetherbeei_contig5293:545..2162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1347
Hectar predicted targeting categoryother localisation
Exons3
Cds size1347
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.0474586-CDS-P-wetherbeei_contig5293:544..6041683186793.0474586-CDS-P-wetherbeei_contig5293:544..604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5293 545..604 -
1683186793.0661566-CDS-P-wetherbeei_contig5293:794..13781683186793.0661566-CDS-P-wetherbeei_contig5293:794..1378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5293 795..1378 -
1683186793.078083-CDS-P-wetherbeei_contig5293:1459..21621683186793.078083-CDS-P-wetherbeei_contig5293:1459..2162Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5293 1460..2162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5293.1.1prot_P-wetherbeei_contig5293.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5293 545..2162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5293.1.1

>prot_P-wetherbeei_contig5293.1.1 ID=prot_P-wetherbeei_contig5293.1.1|Name=mRNA_P-wetherbeei_contig5293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
APQPSLEESAGLADALAPEALLGCEIYAESIQRLFRALAAAEDSGQADSG
DSSAEGAGGKGIGGSGGSGSGSRLRRRPCLSSETVLELLADAGLVPVMFG
EPEILEMLRFVAGAAADPAAAAASAIPATAATADAATVAAPAADTTVIPA
GAMGTTGATAPGAAGEVARPLRLYKAHIECLLCIMAVRLLPSVRAEDSAG
AGTAAAADAAIEDAALGGGSALPLSARFETLMRAPVFAAVDATDSSTGAA
ADAYDAYQGNGLLWRPVAREGEVAGQTHRNEIGPGDDLNSGHRGVGTGAD
NSGTGDSGWRRSGDVGGGSSGGYSSGAAVGVSGNESDFLGLATVTAASSA
SACGTALFEELLEPDVMMLFDRYRTQWEAVFGQYSQRELPTRRGSHDGGR
SGGGGGGGSGWSEPGFLFEDCSIFLQDFEALGAAWHGCAAQLHNIFLVS
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mRNA from alignment at P-wetherbeei_contig5293:545..2162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5293.1.1 ID=mRNA_P-wetherbeei_contig5293.1.1|Name=mRNA_P-wetherbeei_contig5293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1618bp|location=Sequence derived from alignment at P-wetherbeei_contig5293:545..2162- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCAGCCGTCGCTTGAGGAATCCGCCGGGCTCGCAGACGCCTTGGC
GCCTGAGGCGCTGCTCGGGTGTGAGATATATGCGGAATCTATCCAGCGGC
TCTTCCGGGCTCTCGCCGCGGCAGAGGACAGCGGGCAGGCTGACAGCGGC
GACAGCAGCGCCGAAGGCGCCGGTGGGAAAGGCATCGGAGGGAGCGGCGG
GAGCGGCAGTGGCAGTCGTCTCCGCCGCCGGCCGTGTCTCTCGTCCGAAA
CGGTACTGGAGCTGCTGGCAGACGCCGGCTTGGTGCCCGTCATGTTTGGG
GAGCCGGAAATCCTGGAGATGCTGCGCTTCGTCGCGGGAGCTGCAGCCGA
CCCCGCTGCTGCTGCAGCTTCCGCTATTCCGGCCACCGCTGCCACCGCCG
ACGCCGCCACCGTCGCCGCCCCCGCGGCCGACACCACCGTCATCCCCGCC
GGCGCCATGGGCACGACCGGCGCCACCGCCCCTGGCGCCGCCGGGGAAGT
CGCACGGCCCCTCCGACTCTACAAGGCACACATCGAATGCCTCTTGTGCA
TAATGGCAGTCCGCCTGCTGCCCAGCGTGAGAGCTGAAGACTCCGCTGGC
GCTGGCACCGCCGCTGCAGCTGATGCAGCCATTGAAGACGCCGCTCTTGG
TGGCGGCTCGGCGCTGCCCCTGTCGGCACGGTTTGAAACTCTGATGCGGG
CTCTGGACGATGCGGTGCCCGGCGTCCTGCTGTTCCGGCTCCCCGGCGAC
CATGGGGTCGATGCCTTCGCCGCCGCCGCATCTCCCGTTTTCGCTGCCGT
TGATGCCACCGACAGTTCGACCGGCGCCGCAGCCGATGCATACGACGCCT
ATCAGGGCAATGGGTTGCTTTGGCGGCCCGTCGCACGTGAAGGCGAAGTT
GCAGGCCAAACACACCGAAACGAAATCGGTCCTGGTGATGATTTAAACAG
CGGCCACCGCGGCGTTGGAACTGGCGCCGACAACAGCGGCACCGGTGACA
GCGGCTGGAGGCGCAGCGGCGATGTCGGCGGCGGTAGCAGCGGCGGCTAC
AGTAGCGGCGCCGCTGTCGGAGTCAGCGGAAACGAAAGCGATTTCCTGGG
GCTTGCAACGGTGACCGCGGCGAGCTCGGCGTCGGCATGCGGCACAGCAC
TGTTCGAAGAGCTGCTGGAGCCCGACGTCATGATGCTCTTCGACCGCTAC
CGGACGCAGTGGGAGGCCGTCTTCGGTCAGTACAGCCAGCGGGAGCTGCC
GACCCGCCGCGGCAGCCATGACGGCGGCAGAAGCGGCGGCGGCGGCGGCG
GCGGCAGCGGTTGGTCGGAGCCGGGATTCCTCTTTGAAGACTGCAGCATC
TTCCTCCAGGACTTTGAGGTCAGGGGTATGAAAAGTTGTGCAGGGCGTAT
TGGAGGGAAGTGTCACTCCGTCAAATCGTTATTACAGGTTTTTGCTCTGA
CACGGTGACGTGGAAGCGAGACCAAGCTCTGCGGCAGCTTCAGTCCTTAA
GCAGCAACATAAGTTTTCGTCTTCTTTGTCCCTTTCTCTCCCCCGTTAAC
TGCGGCAGGCGCTGGGGGCGGCGTGGCACGGCTGCGCCGCGCAGCTCCAC
AACATCTTCCTCGTGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5293:545..2162-

>mRNA_P-wetherbeei_contig5293.1.1 ID=mRNA_P-wetherbeei_contig5293.1.1|Name=mRNA_P-wetherbeei_contig5293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig5293:545..2162- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCAGCCGTCGCTTGAGGAATCCGCCGGGCTCGCAGACGCCTTGGC
GCCTGAGGCGCTGCTCGGGTGTGAGATATATGCGGAATCTATCCAGCGGC
TCTTCCGGGCTCTCGCCGCGGCAGAGGACAGCGGGCAGGCTGACAGCGGC
GACAGCAGCGCCGAAGGCGCCGGTGGGAAAGGCATCGGAGGGAGCGGCGG
GAGCGGCAGTGGCAGTCGTCTCCGCCGCCGGCCGTGTCTCTCGTCCGAAA
CGGTACTGGAGCTGCTGGCAGACGCCGGCTTGGTGCCCGTCATGTTTGGG
GAGCCGGAAATCCTGGAGATGCTGCGCTTCGTCGCGGGAGCTGCAGCCGA
CCCCGCTGCTGCTGCAGCTTCCGCTATTCCGGCCACCGCTGCCACCGCCG
ACGCCGCCACCGTCGCCGCCCCCGCGGCCGACACCACCGTCATCCCCGCC
GGCGCCATGGGCACGACCGGCGCCACCGCCCCTGGCGCCGCCGGGGAAGT
CGCACGGCCCCTCCGACTCTACAAGGCACACATCGAATGCCTCTTGTGCA
TAATGGCAGTCCGCCTGCTGCCCAGCGTGAGAGCTGAAGACTCCGCTGGC
GCTGGCACCGCCGCTGCAGCTGATGCAGCCATTGAAGACGCCGCTCTTGG
TGGCGGCTCGGCGCTGCCCCTGTCGGCACGGTTTGAAACTCTGATGCGGG
CTCCCGTTTTCGCTGCCGTTGATGCCACCGACAGTTCGACCGGCGCCGCA
GCCGATGCATACGACGCCTATCAGGGCAATGGGTTGCTTTGGCGGCCCGT
CGCACGTGAAGGCGAAGTTGCAGGCCAAACACACCGAAACGAAATCGGTC
CTGGTGATGATTTAAACAGCGGCCACCGCGGCGTTGGAACTGGCGCCGAC
AACAGCGGCACCGGTGACAGCGGCTGGAGGCGCAGCGGCGATGTCGGCGG
CGGTAGCAGCGGCGGCTACAGTAGCGGCGCCGCTGTCGGAGTCAGCGGAA
ACGAAAGCGATTTCCTGGGGCTTGCAACGGTGACCGCGGCGAGCTCGGCG
TCGGCATGCGGCACAGCACTGTTCGAAGAGCTGCTGGAGCCCGACGTCAT
GATGCTCTTCGACCGCTACCGGACGCAGTGGGAGGCCGTCTTCGGTCAGT
ACAGCCAGCGGGAGCTGCCGACCCGCCGCGGCAGCCATGACGGCGGCAGA
AGCGGCGGCGGCGGCGGCGGCGGCAGCGGTTGGTCGGAGCCGGGATTCCT
CTTTGAAGACTGCAGCATCTTCCTCCAGGACTTTGAGGCGCTGGGGGCGG
CGTGGCACGGCTGCGCCGCGCAGCTCCACAACATCTTCCTCGTGTCC
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