mRNA_P-wetherbeei_contig52919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52919.1.1
Unique NamemRNA_P-wetherbeei_contig52919.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A418XYW3_9GAMM (TetR/AcrR family transcriptional regulator n=3 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A418XYW3_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 4.520e-23
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAP-LGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAPP 435
            A I +KC Q+       EL P    R  LTRI  +FL+L+  P+VI L R++ + A+ +T M+Q+F++AGP  TLTAM  L+ H    G+L VP P +AA+ FF++L+G EH++V++              A+  V MFLRAY  P
Sbjct:   67 AAIEAKC-QNMLPMPIFELEPGQPIRTTLTRIGLAFLDLIHTPEVIELQRLMGSLATQDTAMSQLFFEAGPQRTLTAMENLVRHASDAGLLDVPDPRQAANNFFSLLQGCEHMRVMIGYSEPMTACEAQPHAEQVVDMFLRAYGVP 211          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: UPI001C7F360B (TetR/AcrR family transcriptional regulator n=1 Tax=Pseudomonas sp. MRCP1333 TaxID=2772558 RepID=UPI001C7F360B)

HSP 1 Score: 96.7 bits (239), Expect = 4.540e-22
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    7 IGSKCDQHFEAREFVELAPLGARE-ALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAY 426
            + SKC++      F EL P G+ E AL  I   F  L+   + +ALHR++++ A+    ++Q+F+D GP   + AM  LLE  DA+G L+V  P+ AA+ FF M+KG  H +VL+ VG +PD         + V +FLRAY
Sbjct:   71 VESKCEEQLPPLIF-ELRPGGSVEDALRAIGRGFSKLINSDESLALHRLMISLATQNPQLSQLFFDVGPQRVIDAMRHLLEQADASGQLQVDNPVHAAEHFFCMIKGGIHFRVLMGVGQAPDDTQTEAHVREVVEIFLRAY 210          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A5C7RUB9_9GAMM (TetR/AcrR family transcriptional regulator n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A5C7RUB9_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 6.580e-22
Identity = 52/140 (37.14%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   13 SKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAP 432
            +KC++   +  F++      RE L  IA +F  L+   D IA+HR++M   +   H+  +FW AGP          L H  A G L VP+P RAA QFF +LKG  H Q++  +   P  A +      TV MFLRAY P
Sbjct:   81 AKCEEQLPSALFLQETEGPLREQLLAIARAFFALVTSEDAIAMHRMMMMPGTGGDHIRALFWQAGPQRLQDGFCEFLRHHVARGELVVPEPQRAASQFFCLLKGDMHAQMMCGMCCQPGEAEIEAHLAATVEMFLRAYGP 220          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A143HJB0_9GAMM (TetR family transcriptional regulator n=1 Tax=Microbulbifer thermotolerans TaxID=252514 RepID=A0A143HJB0_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 3.320e-21
Identity = 58/144 (40.28%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAP 432
            A I +KC+       F         + LTRI  +FL+L+   D I+L R+L   +  E  M Q++ +AGP  TL+ M  LL    A  +LRV  P  AADQFF ML G  H+QVL+D  A P    + E  D+ V +FLRAY P
Sbjct:   68 AAIEAKCENQMPLPIFALENGDSIEQVLTRIGTAFLSLVEGEDAISLMRILCAESCRE--MAQLYLEAGPRRTLSEMESLLRRAVALKLLRVENPAAAADQFFGMLMGCRHMQVLVDSCAPPSECEIRERVDEVVQVFLRAYGP 209          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: UPI001FF42572 (TetR/AcrR family transcriptional regulator n=1 Tax=Alcanivorax sp. S6407 TaxID=2926424 RepID=UPI001FF42572)

HSP 1 Score: 89.7 bits (221), Expect = 2.230e-19
Identity = 49/142 (34.51%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAY 426
            A + +KC        F     L  R +LTRI  +F+ L+  P+VIAL R++ T A+ +T M+++F++AGP  TL+AM  L+ + +   +L  P P  AA+ FFA+L+G EH++  + +      +      +  V MFLRA+
Sbjct:   67 AAVEAKCHNTLPEPFFELDETLPIRASLTRIGLAFIELIHSPEVIALERLMCTMATQDTEMSRLFFEAGPQRTLSAMESLIRNANDANLLDTPNPRHAAESFFALLQGREHMRTRIGIREPMTSSEAQPHVERAVDMFLRAF 208          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A0S2G1Y1_9GAMM (Bacterial regulatory, tetR family protein n=2 Tax=Lysobacter TaxID=68 RepID=A0A0S2G1Y1_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 2.520e-19
Identity = 51/143 (35.66%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYA 429
            A + + C+QH  +  F        RE L  IA +F  L+  P+ I +HR+L +   A++ ++++FWDAGP    T    LL+     G L V   +RAA+QFFA++KG  H  ++   G S   + L    + +V MFLRAYA
Sbjct:   75 AAVKAYCEQHLPSPLFEAALATPLRERLLEIATAFYELISTPEAIQIHRLLCSPQMADSPLSKMFWDAGPQRLHTEFADLLQRRAETGELEVEDALRAANQFFALVKGEPHAMLMFGCG-STGKSELKAHIEASVTMFLRAYA 216          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: UPI001390DC0E (TetR/AcrR family transcriptional regulator n=1 Tax=Pseudoxanthomonas sangjuensis TaxID=1503750 RepID=UPI001390DC0E)

HSP 1 Score: 89.4 bits (220), Expect = 3.260e-19
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAP 432
            A I SKCD+      F        RE L  IA +F  L+   + +++HR++++SA  +  + ++FW+AGP PT+ A+V  L      G L +    RAA QFF + KG  H +++  +G  P  A +      TV  FLR YAP
Sbjct:   72 AAIRSKCDEMLPKDLFQPDLKGPLREQLLAIARAFFALVSSDEALSMHRMMLSSAQTDAPLREMFWNAGPQPTIDALVAFLRARVEAGELAIDDIDRAAHQFFCLTKGELHNRLMCGLGGRPGRAEINVHLQSTVDFFLRGYAP 215          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A0A1YLV4_9PSED (TetR family transcriptional regulator n=2 Tax=Pseudomonas TaxID=286 RepID=A0A0A1YLV4_9PSED)

HSP 1 Score: 89.0 bits (219), Expect = 4.590e-19
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAP 432
            A + SKC++      F   A       L  I  SF  L+   + + LHR+++T A+    ++Q+F++AGP   L  M  LL   +  G LR+  P  AADQFF+++KG  +  +L+  G    GAA  +   + V MFLRAY P
Sbjct:   68 AAVKSKCEEQLPELFFELAADAPIENVLLTIGRSFNALINSRESVELHRLMVTQATQNPKLSQLFYEAGPQRLLNEMARLLSRAELTGKLRIDDPHCAADQFFSLVKGGANFCLLIGCGEPLQGAAAEQHVQNAVTMFLRAYRP 211          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: A0A6G6IUY6_9PSED (TetR/AcrR family transcriptional regulator n=1 Tax=Pseudomonas nitroreducens TaxID=46680 RepID=A0A6G6IUY6_9PSED)

HSP 1 Score: 88.6 bits (218), Expect = 5.940e-19
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    1 ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAY 426
            A + SKC++      F     +   + L  I  S   L+   + +ALHRV+M+ A+ ++ ++++F++AGP   L  M  LL   DA G LRVP P+RAA+QFF ++KG  + ++L+    +  GA       D V +FLRA+
Sbjct:   68 AAVKSKCEEQLPELLFELSDEMPVAQVLLSIGRSCNELINCRESVALHRVMMSLATQDSKLSKMFYEAGPQRVLHGMAELLRRADAAGKLRVPDPLRAAEQFFCLIKGGIYCRLLIGCDEALQGAEAERHVRDAVEVFLRAF 209          
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Match: Q0VLH6_ALCBS (Transcriptional regulator, TetR-family n=1 Tax=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) TaxID=393595 RepID=Q0VLH6_ALCBS)

HSP 1 Score: 87.8 bits (216), Expect = 1.270e-18
Identity = 45/121 (37.19%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   64 LGAREALTRIANSFLNLMFHPDVIALHRVLMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAADQFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAY 426
            L  R  LT+I  +FL L+  P V+ L R++ + A+ +  M+Q+F++AGP  T+TAM  L+   +  G+L+   P +AA+ FF++L+G EH++V++   A    +     A+  V MFLRAY
Sbjct:   91 LSIRATLTKIGLAFLQLIHTPKVVELQRLMTSQATQDPAMSQLFFEAGPQRTVTAMENLVRKGNNIGLLQADNPKQAAENFFSLLQGCEHMRVMIGCNAPMTASEAKPHAEQVVDMFLRAY 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A418XYW3_9GAMM4.520e-2340.41TetR/AcrR family transcriptional regulator n=3 Tax... [more]
UPI001C7F360B4.540e-2239.01TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A5C7RUB9_9GAMM6.580e-2237.14TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A143HJB0_9GAMM3.320e-2140.28TetR family transcriptional regulator n=1 Tax=Micr... [more]
UPI001FF425722.230e-1934.51TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A0S2G1Y1_9GAMM2.520e-1935.66Bacterial regulatory, tetR family protein n=2 Tax=... [more]
UPI001390DC0E3.260e-1934.72TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A0A1YLV4_9PSED4.590e-1934.72TetR family transcriptional regulator n=2 Tax=Pseu... [more]
A0A6G6IUY6_9PSED5.940e-1934.51TetR/AcrR family transcriptional regulator n=1 Tax... [more]
Q0VLH6_ALCBS1.270e-1837.19Transcriptional regulator, TetR-family n=1 Tax=Alc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52919contigP-wetherbeei_contig52919:3..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1397527.Q670_12180
PFAMsTetR_C_7,TetR_N
Model size441
Max annot lvl135619|Oceanospirillales
KEGG koko:K18301
KEGG ModuleM00642
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.41e-24
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,1S7E9@1236|Gammaproteobacteria,1XMJJ@135619|Oceanospirillales
Descriptiontranscriptional regulator
Cds size441
COG categoryK
BRITEko00000,ko00002,ko01504,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.9763172-CDS-P-wetherbeei_contig52919:2..4431683186792.9763172-CDS-P-wetherbeei_contig52919:2..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52919 3..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52919.1.1prot_P-wetherbeei_contig52919.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52919 3..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52919.1.1

>prot_P-wetherbeei_contig52919.1.1 ID=prot_P-wetherbeei_contig52919.1.1|Name=mRNA_P-wetherbeei_contig52919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
ALIGSKCDQHFEAREFVELAPLGAREALTRIANSFLNLMFHPDVIALHRV
LMTSASAETHMNQVFWDAGPCPTLTAMVGLLEHFDANGVLRVPKPMRAAD
QFFAMLKGSEHLQVLLDVGASPDGAALTELADDTVAMFLRAYAPPA*
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mRNA from alignment at P-wetherbeei_contig52919:3..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52919.1.1 ID=mRNA_P-wetherbeei_contig52919.1.1|Name=mRNA_P-wetherbeei_contig52919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig52919:3..443+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCATCGGCAGCAAGTGCGACCAACATTTCGAGGCCCGTGAATTCGT CGAACTGGCACCACTGGGCGCGCGCGAGGCGCTGACCCGCATCGCCAATT CTTTCCTCAATCTGATGTTCCATCCCGACGTCATCGCCCTGCATAGGGTG TTGATGACCAGTGCCAGCGCCGAGACCCATATGAACCAGGTGTTCTGGGA CGCGGGTCCCTGTCCGACCCTGACGGCGATGGTCGGCCTGCTCGAACACT TTGACGCGAATGGCGTGCTGCGCGTGCCCAAGCCTATGCGTGCGGCCGAT CAATTCTTTGCCATGCTGAAGGGCAGCGAGCATCTGCAAGTGTTGCTCGA TGTCGGCGCGTCACCCGACGGGGCCGCGCTGACGGAACTGGCCGACGATA CCGTGGCGATGTTCCTGCGCGCCTACGCGCCTCCAGCATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52919:3..443+

>mRNA_P-wetherbeei_contig52919.1.1 ID=mRNA_P-wetherbeei_contig52919.1.1|Name=mRNA_P-wetherbeei_contig52919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig52919:3..443+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCATCGGCAGCAAGTGCGACCAACATTTCGAGGCCCGTGAATTCGT
CGAACTGGCACCACTGGGCGCGCGCGAGGCGCTGACCCGCATCGCCAATT
CTTTCCTCAATCTGATGTTCCATCCCGACGTCATCGCCCTGCATAGGGTG
TTGATGACCAGTGCCAGCGCCGAGACCCATATGAACCAGGTGTTCTGGGA
CGCGGGTCCCTGTCCGACCCTGACGGCGATGGTCGGCCTGCTCGAACACT
TTGACGCGAATGGCGTGCTGCGCGTGCCCAAGCCTATGCGTGCGGCCGAT
CAATTCTTTGCCATGCTGAAGGGCAGCGAGCATCTGCAAGTGTTGCTCGA
TGTCGGCGCGTCACCCGACGGGGCCGCGCTGACGGAACTGGCCGACGATA
CCGTGGCGATGTTCCTGCGCGCCTACGCGCCTCCAGCATAA
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