mRNA_P-wetherbeei_contig52911.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52911.1.1
Unique NamemRNA_P-wetherbeei_contig52911.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A6A7KM57_9PROT (3-oxoacid CoA-transferase subunit A n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KM57_9PROT)

HSP 1 Score: 191 bits (485), Expect = 1.890e-58
Identity = 104/176 (59.09%), Postives = 125/176 (71.02%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRG-EMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALP 525
            +LT+I  G+G  GS LA L EA  +AKVICS+ARGRG EM+  E+ W  G++ LELVPQGTFAERIRA GAG   F+TP + GT + AGKE R F  R Y++E  L  D A+LRAER DRFGNL +HG+QANFGP MATAA +TVAEV  L  E  L P  V   GI+V+RVL +P
Sbjct:   47 DLTIIANGTGHPGSGLAHLVEAGRVAKVICSSARGRGSEMSPFEKAWFGGKIGLELVPQGTFAERIRAGGAGHAGFYTPTAVGTDLAAGKEERRFGDRDYILETALTADFAMLRAERGDRFGNLIFHGSQANFGPVMATAAEITVAEVNHL-EESPLDPHGVHAAGIFVDRVLHVP 221          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A3S3V399_9RHOB (3-oxoacid CoA-transferase subunit A n=1 Tax=Gemmobacter intermedius TaxID=1553448 RepID=A0A3S3V399_9RHOB)

HSP 1 Score: 182 bits (463), Expect = 7.630e-55
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVL 516
            +LT+I   +G+    +A +  A M+ K+ICS  R        E  +KAG++ LELVPQGT AERIRA GAGIPAF+TP SYGT + AGK V EFEGR YV E WLK D+AL++AE AD  GNL YHGA  NFGP M  AA L++ + +E+LP G L P+Q+ TPGI+V+R++
Sbjct:   51 DLTVINNNAGNGTVGIAGMIAAGMVRKIICSFPRSAYPQAFTEA-YKAGRIELELVPQGTLAERIRAGGAGIPAFYTPTSYGTELAAGKPVAEFEGRPYVQERWLKADVALVKAELADEAGNLTYHGAARNFGPIMCMAAALSIVQAREILPPGTLDPEQIITPGIFVDRLV 221          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A5C5TC63_9HYPH (3-oxoacid CoA-transferase subunit A n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TC63_9HYPH)

HSP 1 Score: 179 bits (455), Expect = 6.380e-54
Identity = 98/175 (56.00%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRG-EMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLAL 522
            +LTL+V  +    S    L  A ++ KVI SA RGRG E++  E   + G++  E VPQGTFAERIRA GAGIPAFFTPV +GT + AGKE R  +GR  V+E  + GDLAL+RA+ ADR+GNL +  AQ NFGPAMATAATLTVAEV+E   E  +PP+QV  PG++V+RV+A+
Sbjct:   48 DLTLVVNSATHPASLTHELIAAGLVRKVIASAGRGRGNELSPFEVLLRDGKIEFECVPQGTFAERIRAGGAGIPAFFTPVGFGTDLAAGKETRTIDGRDCVLETAISGDLALVRADLADRYGNLVFRHAQMNFGPAMATAATLTVAEVRESREEP-IPPEQVQVPGVFVDRVVAV 221          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A127ETP9_9HYPH (3-oxoadipate CoA-transferase subunit A n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ETP9_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 1.300e-53
Identity = 94/175 (53.71%), Postives = 124/175 (70.86%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRG-EMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLAL 522
            +LTL+V  +    S    L EA ++ KVIC+AARG   + +  ERQW  G++ LE VPQGTF ERIRA GAGIPAF+TPV +GT +  GKEVR F+ R YV+E+ L GD+AL+RA+ AD +GNL +  AQ NFGP MATAA L +AEV+ +L E  +P  QV  PG+Y++RV+A+
Sbjct:   60 DLTLVVNSATHRYSLTHELIEAGLVRKVICTAARGHSKDPSPFERQWTEGKIELECVPQGTFTERIRAGGAGIPAFYTPVGFGTELAKGKEVRNFKDRDYVLEHALTGDVALIRADAADCYGNLSFRYAQMNFGPVMATAARLAIAEVRAVLDEP-MPHDQVRLPGVYIDRVVAV 233          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: UPI000D3AA67A (3-oxoacid CoA-transferase subunit A n=2 Tax=Devosia TaxID=46913 RepID=UPI000D3AA67A)

HSP 1 Score: 179 bits (454), Expect = 1.510e-53
Identity = 90/176 (51.14%), Postives = 123/176 (69.89%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALPD 528
            NLT+I   +G+    +A++ +A M+AK+ICS  R        E+ + AG++ LELVPQGT AERIRA GAGIPAF+TP SYGT +  GK V EF+GR YV E WLK D+AL++AE ADR GNL Y  A  NF P MA+AATLT+ + + ++  G + P+QV TPG++V+R++ + D
Sbjct:   51 NLTIINNNAGNGRVGIAAMIDAGMVAKMICSFPRSADPRAFTEK-YLAGEIELELVPQGTLAERIRAGGAGIPAFYTPTSYGTDLAKGKPVGEFDGRNYVQERWLKADVALIKAELADRHGNLTYRKAGRNFSPLMASAATLTIVQARSVVEPGEIDPEQVVTPGLFVDRIIEIAD 225          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A0Q7DSU9_9HYPH (3-oxoadipate CoA-transferase n=3 Tax=Devosia TaxID=46913 RepID=A0A0Q7DSU9_9HYPH)

HSP 1 Score: 179 bits (453), Expect = 2.130e-53
Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALP 525
            NLTLI   +G+    +A++ +A M++K++CS  R        E+ + AG++ LELVPQGT AERIRA GAGIPAF+TP S+GT + AGK   EFEGR YV E WLK D ALL+AERAD  GNL Y  A  NF P MA AA LT+ +  E++  G + P+QV TPGI+V RV+ +P
Sbjct:   51 NLTLINNNAGNGRIGIAAMIDAGMVSKMVCSFPRSSDPRAFTEK-YLAGEIALELVPQGTLAERIRAGGAGIPAFYTPTSFGTDLAAGKPTAEFEGRMYVEERWLKADAALLKAERADTMGNLTYRKAARNFSPLMAAAARLTIVQASEVVAPGEIDPEQVITPGIFVTRVVVVP 224          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A6M1SJM4_9HYPH (3-oxoacid CoA-transferase subunit A n=3 Tax=Devosiaceae TaxID=2831106 RepID=A0A6M1SJM4_9HYPH)

HSP 1 Score: 178 bits (452), Expect = 3.020e-53
Identity = 91/178 (51.12%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALPDLR 534
            NLT++   +G+    +A++ +A M+AK++CS  R        E+ + AG++ LELVPQGT AERIRA GAGIPAF+TP SYGT + AGK V EFEGR YV E WLK D ALL+AE AD  GN  Y  A  NF P MA AA LT+ +   ++  G + P+QV TPGI+VNRV+ + D +
Sbjct:   51 NLTVVNNNAGNGRIGIAAMIDAGMVAKMVCSFPRSADPRAFTEK-YLAGEIALELVPQGTLAERIRAGGAGIPAFYTPASYGTDVAAGKPVAEFEGRHYVQERWLKADAALLKAELADTMGNCTYRKAARNFSPLMAAAAKLTIVQAARIVEPGEIDPEQVVTPGIFVNRVVEVADAK 227          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A0A1E4F411_9HYPH (3-oxoadipate CoA-transferase n=1 Tax=Pelagibacterium sp. SCN 63-23 TaxID=1660124 RepID=A0A1E4F411_9HYPH)

HSP 1 Score: 177 bits (450), Expect = 6.060e-53
Identity = 91/178 (51.12%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALPDLR 534
            NLTL+   +G+    LA++ +A M+AK+ICS  R        E+ + AG++ LE+VPQGT AERIRA GAGIPAF+TP SYGT +  GK V EFEG+ YV E WLK D AL++AE  D  GNL Y  A  NF P MA AA LT+ +V +L+  G + P+ V +PGI+VNRV+ + D R
Sbjct:   51 NLTLVNNNAGNGRIGLAAMIDAGMVAKMICSFPRSADPRAFTEK-YMAGEIALEIVPQGTLAERIRAGGAGIPAFYTPASYGTDVAKGKPVAEFEGKHYVQERWLKADAALIKAELGDSLGNLTYRKAARNFSPLMAAAAKLTIVQVSKLVAPGEIDPENVVSPGIFVNRVVEVADAR 227          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: W3RCJ4_9BRAD (3-oxoadipate CoA-transferase subunit A n=2 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RCJ4_9BRAD)

HSP 1 Score: 176 bits (446), Expect = 1.470e-52
Identity = 96/179 (53.63%), Postives = 123/179 (68.72%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRG-EMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLALPDLR 534
            NLTL+V  +    S    L EA ++ KVICSAARG G E++  E+ WK G++ L+ +PQGTFAE IRA GAGIPAFFTPV  GT +  GKEVR F  R+YV+E  +  DLA++RA+ AD +GNL +  AQ NFG AMATAA LTVAEV+E   E   P ++V  PG+YV+RV   P+ +
Sbjct:   46 NLTLVVNSATHRLSFTHELIEAGLVRKVICSAARGPGKELSPFEKLWKEGKIELQCLPQGTFAEAIRAGGAGIPAFFTPVGVGTDLTKGKEVRVFGDREYVLEQAITADLAIIRADTADTYGNLTFRFAQMNFGAAMATAAKLTVAEVREFRSEPT-PHERVQLPGVYVDRVFVAPEAK 223          
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Match: A7IEC6_XANP2 (3-oxoacid CoA-transferase, A subunit n=3 Tax=Xanthobacter TaxID=279 RepID=A7IEC6_XANP2)

HSP 1 Score: 176 bits (446), Expect = 1.560e-52
Identity = 88/174 (50.57%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    1 NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQVLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYVMENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKELLPEGALPPQQVGTPGIYVNRVLAL 522
            +LT+I   +G+  + LA+L  A ++ KV+CS  R + +    ++ ++ G++ LELVPQG   ERIRA GAGI AFFTP  YGTPI AGKE R+ +GR YV+E  LK D AL++A R DR+GNL Y     NFGP MATAAT+TVA+V++++P G L P+ + TPG++V+RV+A+
Sbjct:   47 DLTIISNNAGNGTTGLAALLAAGLVKKVVCSFPR-QADSFVFDKLYREGKLELELVPQGNLVERIRAGGAGIGAFFTPTGYGTPIAAGKETRQIDGRNYVLEYPLKADFALIKARRGDRWGNLTYRKTARNFGPVMATAATITVAQVEDIVPLGTLDPEDIVTPGVFVDRVVAI 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7KM57_9PROT1.890e-5859.093-oxoacid CoA-transferase subunit A n=1 Tax=Alphap... [more]
A0A3S3V399_9RHOB7.630e-5554.073-oxoacid CoA-transferase subunit A n=1 Tax=Gemmob... [more]
A0A5C5TC63_9HYPH6.380e-5456.003-oxoacid CoA-transferase subunit A n=1 Tax=Reyran... [more]
A0A127ETP9_9HYPH1.300e-5353.713-oxoadipate CoA-transferase subunit A n=2 Tax=Rho... [more]
UPI000D3AA67A1.510e-5351.143-oxoacid CoA-transferase subunit A n=2 Tax=Devosi... [more]
A0A0Q7DSU9_9HYPH2.130e-5352.573-oxoadipate CoA-transferase n=3 Tax=Devosia TaxID... [more]
A0A6M1SJM4_9HYPH3.020e-5351.123-oxoacid CoA-transferase subunit A n=3 Tax=Devosi... [more]
A0A1E4F411_9HYPH6.060e-5351.123-oxoadipate CoA-transferase n=1 Tax=Pelagibacteri... [more]
W3RCJ4_9BRAD1.470e-5253.633-oxoadipate CoA-transferase subunit A n=2 Tax=Afi... [more]
A7IEC6_XANP21.560e-5250.573-oxoacid CoA-transferase, A subunit n=3 Tax=Xanth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52911contigP-wetherbeei_contig52911:1..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121028.ARQE01000006_gene4474
Preferred namepcaI
PFAMsCoA_trans
Model size540
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00014
KEGG koko:K01031
KEGG ReactionR02990
KEGG Pathwayko00362,ko01100,ko01120,map00362,map01100,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.58e-53
EggNOG OGsCOG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,2TTE6@28211|Alphaproteobacteria,2PKJM@255475|Aurantimonadaceae
EC2.8.3.6
DescriptionCoenzyme A transferase
Cds size540
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.8405313-CDS-P-wetherbeei_contig52911:0..5401683186792.8405313-CDS-P-wetherbeei_contig52911:0..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52911 1..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52911.1.1prot_P-wetherbeei_contig52911.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52911 1..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52911.1.1

>prot_P-wetherbeei_contig52911.1.1 ID=prot_P-wetherbeei_contig52911.1.1|Name=mRNA_P-wetherbeei_contig52911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
NLTLIVTGSGSNGSRLASLFEANMIAKVICSAARGRGEMTEMERQWKAGQ
VLLELVPQGTFAERIRAAGAGIPAFFTPVSYGTPIGAGKEVREFEGRQYV
MENWLKGDLALLRAERADRFGNLQYHGAQANFGPAMATAATLTVAEVKEL
LPEGALPPQQVGTPGIYVNRVLALPDLRT*
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mRNA from alignment at P-wetherbeei_contig52911:1..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52911.1.1 ID=mRNA_P-wetherbeei_contig52911.1.1|Name=mRNA_P-wetherbeei_contig52911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52911:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
AACCTGACTCTGATCGTCACCGGCTCCGGCAGCAACGGTTCGCGCCTGGC GAGCCTGTTCGAGGCGAACATGATCGCCAAGGTGATCTGCAGCGCCGCGC GCGGCCGTGGCGAGATGACCGAGATGGAGCGGCAATGGAAGGCCGGCCAG GTTTTGCTGGAGCTGGTGCCGCAGGGCACTTTCGCCGAGCGCATTCGCGC CGCCGGCGCCGGCATCCCGGCTTTCTTCACACCAGTCAGCTACGGCACGC CGATCGGCGCTGGCAAGGAAGTCCGTGAATTCGAGGGTCGTCAATATGTG ATGGAGAACTGGCTGAAAGGCGACCTTGCCCTGCTGCGGGCCGAACGCGC CGACCGCTTCGGCAACCTGCAGTATCACGGCGCCCAGGCGAATTTCGGTC CGGCCATGGCAACCGCCGCGACGCTGACCGTCGCCGAGGTGAAGGAGCTG CTGCCCGAGGGCGCCCTTCCGCCGCAACAGGTCGGCACGCCCGGCATCTA TGTCAACCGGGTGCTCGCGCTGCCGGATCTGCGCACATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52911:1..540+

>mRNA_P-wetherbeei_contig52911.1.1 ID=mRNA_P-wetherbeei_contig52911.1.1|Name=mRNA_P-wetherbeei_contig52911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52911:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
AACCTGACTCTGATCGTCACCGGCTCCGGCAGCAACGGTTCGCGCCTGGC
GAGCCTGTTCGAGGCGAACATGATCGCCAAGGTGATCTGCAGCGCCGCGC
GCGGCCGTGGCGAGATGACCGAGATGGAGCGGCAATGGAAGGCCGGCCAG
GTTTTGCTGGAGCTGGTGCCGCAGGGCACTTTCGCCGAGCGCATTCGCGC
CGCCGGCGCCGGCATCCCGGCTTTCTTCACACCAGTCAGCTACGGCACGC
CGATCGGCGCTGGCAAGGAAGTCCGTGAATTCGAGGGTCGTCAATATGTG
ATGGAGAACTGGCTGAAAGGCGACCTTGCCCTGCTGCGGGCCGAACGCGC
CGACCGCTTCGGCAACCTGCAGTATCACGGCGCCCAGGCGAATTTCGGTC
CGGCCATGGCAACCGCCGCGACGCTGACCGTCGCCGAGGTGAAGGAGCTG
CTGCCCGAGGGCGCCCTTCCGCCGCAACAGGTCGGCACGCCCGGCATCTA
TGTCAACCGGGTGCTCGCGCTGCCGGATCTGCGCACATGA
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