mRNA_P-wetherbeei_contig52852.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52852.1.1
Unique NamemRNA_P-wetherbeei_contig52852.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A3D4BA95_9BACT (Nitrite reductase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D4BA95_9BACT)

HSP 1 Score: 163 bits (412), Expect = 1.360e-49
Identity = 69/124 (55.65%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVPDR 372
            M E+++G+  +F DPGR+V+E+ GI++GVF+  G F A+EN CPHLGGP CQG +LPR ++DVA+D  +  R FS+ Q N+ICPWHG EFD+ TG HV     RLR V+VR E GEVFIT+P++
Sbjct:    1 MPEINIGQVASFEDPGRRVVEIAGIQIGVFQLDGEFYAYENTCPHLGGPACQGKILPRVLEDVAEDKKSAGRVFSRNQLNIICPWHGFEFDIRTGAHVVVAKYRLRPVSVRTERGEVFITLPEK 124          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A2E6NHA9_9BACT (Nitrite reductase n=3 Tax=root TaxID=1 RepID=A0A2E6NHA9_9BACT)

HSP 1 Score: 157 bits (397), Expect = 2.610e-47
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVPDR 372
            M+E+++G   +F DP R+VIE+ G++VGVF+  G F A+EN CPHLGGP CQG +LPR ++DV ++  +L R F++ Q NVICPWHG EFD+ TG HV     RLR VAVR E GEVFIT+P +
Sbjct:    1 MSEINIGTVASFDDPSRRVIEIAGMQVGVFRLDGEFYAYENKCPHLGGPACQGKILPRVLEDVRENKKSLGRVFAQNQLNVICPWHGFEFDIRTGAHVAVPKYRLRPVAVRTEGGEVFITLPKK 124          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A2E4W3G6_9BACT (Nitrite reductase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E4W3G6_9BACT)

HSP 1 Score: 154 bits (388), Expect = 6.120e-46
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVP 366
            M EV++G+  +F DPGR+V+E+G +++GVF+  G F A+EN CPHLGGP CQG +LPR ++ VA+D  +  R FS+ Q N+ICPWHG EFD+ TG+HV     RLR V +R   G+V++T+P
Sbjct:    1 MPEVNIGKASSFQDPGRRVVEIGSVQIGVFQLDGKFYAYENRCPHLGGPACQGKILPRVLEAVAEDKKSAGRVFSRDQLNIICPWHGFEFDIRTGKHVAISKYRLRPVPIRTGGGDVYVTLP 122          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A1Q4B9V7_9HYPH (Rieske domain-containing protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1Q4B9V7_9HYPH)

HSP 1 Score: 153 bits (386), Expect = 1.020e-45
Identity = 69/121 (57.02%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITV 363
            M+EV+VG   +F DPGRKV EVGG EVGVF   G F A+EN CPHL GP CQG +LP   + V  D  +  R FSK   N++CPWHGMEFD+ TG H T + +RLRKV VRVE GE+++T+
Sbjct:    1 MSEVNVGPASSFTDPGRKVFEVGGQEVGVFLLGGEFYAWENRCPHLDGPACQGRLLPLATEAVNADRTSRGREFSKEHMNIVCPWHGMEFDIRTGRHPTNQAIRLRKVPVRVERGEIYVTL 121          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A381TYT6_9ZZZZ (Rieske domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A381TYT6_9ZZZZ)

HSP 1 Score: 150 bits (379), Expect = 1.430e-44
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVP 366
            M+EV++G+  +F DPGR+V+E+ GI++GVF+  G F A+EN CPHLGGP CQG +LPR ++ V++D  +  R FS++  NV+CPWHG EFD+ TG HV     RLR+V+VR +   VF+ +P
Sbjct:    1 MSEVNIGKISSFEDPGRRVVEINGIQIGVFRLDGEFYAYENRCPHLGGPACQGKLLPRVLEAVSKDRKSEGRVFSRSDMNVVCPWHGFEFDIRTGAHVVISRYRLRRVSVRTDQENVFLALP 122          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A3N5N4U8_9HYPH (Rieske (2Fe-2S) protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N4U8_9HYPH)

HSP 1 Score: 145 bits (365), Expect = 2.970e-42
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVPD 369
            M E+++G+   F +PGRKVIEV G+ VGVF   G FTAFEN+CPH+GGPVCQG ++ R  + VA D  +L  SFS  Q NV+CPWHG EFD+S+G H     LRLR V + V D +V I++P+
Sbjct:    1 MREIAIGKVATFPNPGRKVIEVDGVAVGVFCRNGTFTAFENVCPHMGGPVCQGKLIARVQELVADDKTSLGFSFSPEQTNVVCPWHGYEFDISSGRHQGDPRLRLRPVKITVVDDDVVISLPE 123          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A1H1I9D2_9HYPH (Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase n=3 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1I9D2_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 1.290e-40
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITVPDR 372
            MT++SVG   A A   R V+E+ G+ +G++   GAFTAF N CPH+GGPVCQG ++PRT++ +  D  +L  +FSKT  +++CPWHG EFD  +G H     LRL  V VRV  GEV +T+P+R
Sbjct:    1 MTDISVGSSAALAKRQRIVVEIDGVSIGIYHRDGAFTAFLNRCPHMGGPVCQGKLMPRTLERIGADGGSLGLAFSKTDEHIVCPWHGYEFDTRSGRHPANPRLRLTPVPVRVAAGEVIVTLPER 124          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A6L5FGV9_9HYPH (Rieske 2Fe-2S domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FGV9_9HYPH)

HSP 1 Score: 135 bits (340), Expect = 1.300e-38
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVE-DGEVFITVPD 369
            M E+++G    F DPGRK+I   G+EVGVFK   AFTA+ N CPH+GGP CQG ++ +  + +A D  +    FSKTQ N++CPWHG EFD+ TG H     +RLR V V +  DG+V +T+PD
Sbjct:    1 MRELNIGPASEFDDPGRKIIAFDGVEVGVFKLGDAFTAYFNHCPHMGGPACQGKIIAKVDEAIAPDRTSKGMIFSKTQTNMVCPWHGYEFDIRTGVHPGNARMRLRPVKVHLSTDGDVIVTLPD 124          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: A0A6N7F6S9_9PROT (Rieske 2Fe-2S domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F6S9_9PROT)

HSP 1 Score: 132 bits (333), Expect = 1.110e-37
Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITV 363
            MT++ VG ED F D GRKVI  G +E+GVF+  G F A+EN CPH GGPVCQG +L R ++ + +D  +    +++   +++CPWHG EF++ TG H   K +RLR   V+V+DGEV++ V
Sbjct:    1 MTDIFVGNEDEFKDRGRKVIAHGDLEIGVFRLDGGFYAYENRCPHQGGPVCQGRVLNRVMEVLGEDKTSQGLKWAEEDVHIVCPWHGFEFNIKTGRHPGAKGVRLRPYDVKVKDGEVYVVV 121          
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Match: UPI0016645D27 (Rieske (2Fe-2S) protein n=1 Tax=Aureimonas glaciei TaxID=1776957 RepID=UPI0016645D27)

HSP 1 Score: 129 bits (324), Expect = 2.930e-36
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPVCQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTTKTLRLRKVAVRVEDGEVFITV 363
            M E  VGR+D FAD  ++++ VGG+EVG+F+  G    + N+CPH GGPVCQG +  R +D + +      R++  +  N++CPWHG EFD+ TG H  T  LRLR VA  + DGEV++ V
Sbjct:    1 MPEFRVGRQDEFADGDKRLMIVGGVEVGLFRLDGDIFCWRNICPHQGGPVCQGQVFRRVLDVIDESGQQRGRTYHDSDKNIVCPWHGAEFDIRTGRHAGTGRLRLRAVATEIRDGEVYLHV 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52852.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4BA95_9BACT1.360e-4955.65Nitrite reductase n=1 Tax=Candidatus Latescibacter... [more]
A0A2E6NHA9_9BACT2.610e-4755.65Nitrite reductase n=3 Tax=root TaxID=1 RepID=A0A2E... [more]
A0A2E4W3G6_9BACT6.120e-4651.64Nitrite reductase n=1 Tax=Acidobacteria bacterium ... [more]
A0A1Q4B9V7_9HYPH1.020e-4557.02Rieske domain-containing protein n=2 Tax=Hyphomicr... [more]
A0A381TYT6_9ZZZZ1.430e-4450.82Rieske domain-containing protein n=2 Tax=root TaxI... [more]
A0A3N5N4U8_9HYPH2.970e-4253.66Rieske (2Fe-2S) protein n=1 Tax=Hyphomicrobiaceae ... [more]
A0A1H1I9D2_9HYPH1.290e-4049.19Ferredoxin subunit of nitrite reductase or a ring-... [more]
A0A6L5FGV9_9HYPH1.300e-3849.19Rieske 2Fe-2S domain-containing protein n=1 Tax=Hy... [more]
A0A6N7F6S9_9PROT1.110e-3747.11Rieske 2Fe-2S domain-containing protein n=1 Tax=Al... [more]
UPI0016645D272.930e-3645.45Rieske (2Fe-2S) protein n=1 Tax=Aureimonas glaciei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52852contigP-wetherbeei_contig52852:39..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28042.GU90_10470
PFAMsRieske
Model size372
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-31
EggNOG OGsCOG2146@1|root,COG2146@2|Bacteria,2IFRC@201174|Actinobacteria,4E71A@85010|Pseudonocardiales
DescriptionRieske [2Fe-2S] domain
Cds size372
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.2097354-CDS-P-wetherbeei_contig52852:38..4101683186792.2097354-CDS-P-wetherbeei_contig52852:38..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52852 39..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52852.1.1prot_P-wetherbeei_contig52852.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52852 39..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52852.1.1

>prot_P-wetherbeei_contig52852.1.1 ID=prot_P-wetherbeei_contig52852.1.1|Name=mRNA_P-wetherbeei_contig52852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MTEVSVGREDAFADPGRKVIEVGGIEVGVFKFKGAFTAFENLCPHLGGPV
CQGLMLPRTVDDVAQDNVNLARSFSKTQHNVICPWHGMEFDVSTGEHVTT
KTLRLRKVAVRVEDGEVFITVPDR
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mRNA from alignment at P-wetherbeei_contig52852:39..410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52852.1.1 ID=mRNA_P-wetherbeei_contig52852.1.1|Name=mRNA_P-wetherbeei_contig52852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig52852:39..410- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGAAGTCAGTGTGGGCCGCGAAGACGCGTTTGCCGATCCAGGCCG CAAGGTGATCGAGGTCGGCGGTATCGAGGTCGGCGTCTTCAAGTTCAAGG GCGCCTTCACGGCGTTCGAGAATCTTTGCCCGCATCTCGGCGGCCCCGTC TGTCAGGGCCTGATGCTGCCGCGCACGGTCGATGACGTCGCGCAGGACAA CGTCAACCTGGCGCGCAGCTTTTCCAAGACCCAGCACAATGTGATCTGTC CCTGGCATGGCATGGAGTTCGACGTCTCGACTGGCGAGCACGTCACCACG AAGACACTGCGGCTGCGCAAGGTGGCAGTGCGTGTCGAGGACGGCGAAGT GTTCATCACCGTGCCTGATCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52852:39..410-

>mRNA_P-wetherbeei_contig52852.1.1 ID=mRNA_P-wetherbeei_contig52852.1.1|Name=mRNA_P-wetherbeei_contig52852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig52852:39..410- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGAAGTCAGTGTGGGCCGCGAAGACGCGTTTGCCGATCCAGGCCG
CAAGGTGATCGAGGTCGGCGGTATCGAGGTCGGCGTCTTCAAGTTCAAGG
GCGCCTTCACGGCGTTCGAGAATCTTTGCCCGCATCTCGGCGGCCCCGTC
TGTCAGGGCCTGATGCTGCCGCGCACGGTCGATGACGTCGCGCAGGACAA
CGTCAACCTGGCGCGCAGCTTTTCCAAGACCCAGCACAATGTGATCTGTC
CCTGGCATGGCATGGAGTTCGACGTCTCGACTGGCGAGCACGTCACCACG
AAGACACTGCGGCTGCGCAAGGTGGCAGTGCGTGTCGAGGACGGCGAAGT
GTTCATCACCGTGCCTGATCGC
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