mRNA_P-wetherbeei_contig5282.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5282.2.3
Unique NamemRNA_P-wetherbeei_contig5282.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.670e-43
Identity = 84/133 (63.16%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:  669 EARHFVHLAKLRYYMAPPVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADINAAERTGLFELALIFYE 1067
            EAR F+H  K RYY  PP  + MVYCSLERHRG  VTSF L RDDTGEFLLA SV A+L GP++FHTLQD+HLR ++DIP+S DSAVYLGCM PN  GTEFR +DHRVD R +A +   +  G  EL+ + YE
Sbjct:  204 EARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDANLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMFPNLLGTEFRQLDHRVDPRDSAAMEYVKEKGRNELSAVVYE 336
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.410e-37
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 3 
Query:  642 RGAGRGVVREARHFVHLAKLRYYMAPPVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADINAAERTGLFELALIFYEVD 1073
            RG     V EAR  +  AK R++ AP  +D MVYC L RHRG  VT+F L RDDTGEFLLA S+ AD +GP++FHT QDSHLR ++DI +++DSA YLGCMVPNF GTEFR+MD R          + ER G +E+  + Y+V+
Sbjct:   97 RGGVNDGVEEARRAIFEAKARFFTAPRADDGMVYCGLTRHRGRHVTAFALHRDDTGEFLLACSMEADGTGPMIFHTQQDSHLRMLKDITTAQDSASYLGCMVPNFLGTEFRLMDFR---------ESPERAGKYEVCAVVYDVN 231
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A1V9ZUF0_9STRA (ATP-binding Cassette (ABC) superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUF0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.130e-29
Identity = 74/152 (48.68%), Postives = 90/152 (59.21%), Query Frame = 3 
Query:  543 PVKGPEQYWKRFEGVTDGADARYVMQSLPPGA--DRGAGRGVVREARHFVHLAKLRYYMA--PPVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDH 986
            P    EQ       + D AD  + +    P A  D    R  VR A+ F+H  K  YY A   P  D +++  +ERHRG  VT+  L R+DTGEFLLA S   D SG  VFHTL+DSHLR  +D+P S DSAVYLG MVPNF GTEFR++DH
Sbjct:  102 PTPTAEQSLATLRRLRDLADGEHTLHFASPEALGDAMRLRPDVRVAKRFIHEHKAPYYRAITTPGRDGLLHGCIERHRGDEVTALHLHREDTGEFLLACSCECDYSGAFVFHTLRDSHLRRWKDLPRSEDSAVYLGQMVPNFLGTEFRVLDH 253
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 125 bits (313), Expect = 2.680e-27
Identity = 64/143 (44.76%), Postives = 90/143 (62.94%), Query Frame = 3 
Query:  663 VREARHFVHLAKLRYYMAPPV-----EDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADINAAERTGLF-ELALIFYEVD 1073
            V +AR ++H  K R+Y+ P       E Q+VYC +ER RG    +F L R+DTGEFL AA+VAAD +G  +FHTL+D+HLR ++ IP+++DSAVYLGC+VP+  GT F + +HR D              +  ELA + YE +
Sbjct:  106 VTDARRYIHEQKERFYLPPEPTVEGGEHQIVYCCVERRRGADSLAFHLLREDTGEFLCAATVAADRTGKFIFHTLRDTHLRPVDRIPTNQDSAVYLGCLVPSLLGTTFTLYNHRPDPHTDLQTKQGRAAAVENELAYVSYETN 248
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A662YJH7_9STRA (PDZ domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJH7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.060e-24
Identity = 63/134 (47.01%), Postives = 84/134 (62.69%), Query Frame = 3 
Query:  669 EARHFVHLAKLRYYMAPPVED--QMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADINAAERTGLFELALIFY 1064
            +AR F+H  K R+Y  PPV D  ++V   +ER RG  VT+ +   +DTG FLLAAS A+D SGP +FHT++DSHLR + ++P S DSAVYLG + P+F GTEF + DH  D  +  D          ELA + Y
Sbjct:  357 QARAFIHQHKQRFYRPPPVADTNELVQGCIERLRGEFVTALNFHHEDTGAFLLAASCASDGSGPFIFHTMRDSHLRTMRELPQSEDSAVYLGRLEPSFLGTEFTLFDHHADADQQPD---------HELAFLVY 481
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A225X0F5_9STRA (ABC transporter n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.340e-24
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 3 
Query:  663 VREARHFVHLAKLRYYMAPPVED-----QMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDH 986
            V +AR F+H  K R+Y  PPV D     +MV   +ER RG  VT+ +  R++TGEFLL+AS A+D SGP +FHTL+DSHLR + ++P S DSAVYLG + P+F GTEF + DH
Sbjct:  362 VVQARAFIHQHKERFYRPPPVTDGANPHEMVLGCVERLRGEFVTALNFHREETGEFLLSASCASDGSGPFIFHTLRDSHLRTMRELPQSEDSAVYLGRLEPSFLGTEFTLFDH 474
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 116 bits (291), Expect = 1.100e-23
Identity = 71/160 (44.38%), Postives = 90/160 (56.25%), Query Frame = 3 
Query:  669 EARHFVHLAKLRYYM--APPVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADI-----NAAERTGLF-------ELALIFYEVDDEEGRRQRPHA 1106
            +A+ F+H  K ++Y   AP    Q+V   +ER  G  VT+F+  R+DTGEFLLA S   + +G  VFHTLQDSHLRG  D+P S DSAVYLG MVPNF GTEF ++DH+   R          N   R   F       +  L   E +DE+G   RP A
Sbjct:  279 QAKKFIHQHKEKFYRPPAPLPNKQLVNGCVERLVGETVTAFNFHREDTGEFLLACSCLNEKTGVFVFHTLQDSHLRGFRDLPQSEDSAVYLGQMVPNFLGTEFTLLDHQQKRRNEIGFIEYSTNVLGRVPNFLKVAFPKQRTLEETENEDEQGSPTRPRA 438
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: T0QH97_SAPDV (Tub domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH97_SAPDV)

HSP 1 Score: 114 bits (285), Expect = 1.640e-23
Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 3 
Query:  672 ARHFVHLAKLRYY--MAPPVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDH 986
            A+  +H  K R+Y  +  P ++ ++   +ER+RG  VTSF L R+DTGEFLLA S  +DLSGP +FHTL+D+HLR  +D+P   D AVY+G +V NF GTEFR++DH
Sbjct:  162 AKQCIHEHKARFYQPLETPSDNGLLLGCIERYRGDDVTSFHLHREDTGEFLLACSCESDLSGPFLFHTLRDTHLRRWKDLPRGEDCAVYMGELVENFLGTEFRVLDH 268
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: A0A8J5IVE8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IVE8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.400e-23
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 3 
Query:  669 EARHFVHLAKLRYYMAPPVED-----QMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDH 986
            +AR F+H  K R+Y  P V +     ++V   +ER RG  VT+ +  R++TGEFLLAAS A+D SGP VFHTL+DSHLR + +IP S DSAVYLG + P+F GTEF + DH
Sbjct:  195 QARAFIHQHKQRFYRPPRVNEGTNPHELVLGCVERLRGEFVTALNFHREETGEFLLAASCASDGSGPFVFHTLRDSHLRTMREIPQSEDSAVYLGRLEPSFLGTEFTLFDH 305
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Match: W2QRU3_PHYPN (PDZ domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QRU3_PHYPN)

HSP 1 Score: 114 bits (285), Expect = 2.480e-23
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 3 
Query:  663 VREARHFVHLAKLRYYMAPPVED-----QMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHTLQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDH 986
            V +AR F+H  K R+Y  P V++     ++V   +ER RG  VT+ +  R++TGEFLLAAS A+D +GP +FHTL+DSHLR + ++P S DSAVYLG + P+F GTEF + DH
Sbjct:  119 VVQARAFIHQHKQRFYRPPQVKEGASPHELVLGCIERLRGEFVTALNFHREETGEFLLAASCASDGTGPFIFHTLRDSHLRTMRELPQSEDSAVYLGRLEPSFLGTEFTLFDH 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5282.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G017_ECTSI1.670e-4363.16Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CGA0_9STRA3.410e-3753.47Tubby C-terminal-like domain-containing protein (F... [more]
A0A1V9ZUF0_9STRA2.130e-2948.68ATP-binding Cassette (ABC) superfamily n=1 Tax=Ach... [more]
A0A6V1UG96_HETAK2.680e-2744.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A662YJH7_9STRA1.060e-2447.01PDZ domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A225X0F5_9STRA3.340e-2453.10ABC transporter n=1 Tax=Phytophthora megakarya Tax... [more]
A0A8K1C842_PYTOL1.100e-2344.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0QH97_SAPDV1.640e-2351.40Tub domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A8J5IVE8_9STRA2.400e-2353.15Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
W2QRU3_PHYPN2.480e-2350.44PDZ domain-containing protein n=1 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5282contigP-wetherbeei_contig5282:1664..3930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G017
PFAMsTub
Model size1800
Max annot lvl2759|Eukaryota
KEGG koko:K19600
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.06e-46
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Ec32 ortholog descriptionTubby, C-terminal
Ec32 orthologEc-22_003270.1
Descriptionphosphatidylinositol binding
Cds size1143
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.7251778-UTR-P-wetherbeei_contig5282:1663..20511683186791.7251778-UTR-P-wetherbeei_contig5282:1663..2051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5282 1664..2051 -
1683186791.7634172-UTR-P-wetherbeei_contig5282:3661..39301683186791.7634172-UTR-P-wetherbeei_contig5282:3661..3930Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5282 3662..3930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.735054-CDS-P-wetherbeei_contig5282:2051..25881683186791.735054-CDS-P-wetherbeei_contig5282:2051..2588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5282 2052..2588 -
1683186791.7463915-CDS-P-wetherbeei_contig5282:2934..31381683186791.7463915-CDS-P-wetherbeei_contig5282:2934..3138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5282 2935..3138 -
1683186791.7548747-CDS-P-wetherbeei_contig5282:3259..36611683186791.7548747-CDS-P-wetherbeei_contig5282:3259..3661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5282 3260..3661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5282.2.3prot_P-wetherbeei_contig5282.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5282 2052..3661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5282.2.3

>prot_P-wetherbeei_contig5282.2.3 ID=prot_P-wetherbeei_contig5282.2.3|Name=mRNA_P-wetherbeei_contig5282.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=381bp
MSGYADLLGLEPEAAPAQPNGAASKAPDPDPSSSHGSAGRDDGLPASSSA
FASTGHSDAGRGARQDAIARRTVAFDAEREENAREAMAQQGPVKGPEQYW
KRFEGVTDGADARYVMQSLPPGADRGAGRGVVREARHFVHLAKLRYYMAP
PVEDQMVYCSLERHRGGRVTSFDLRRDDTGEFLLAASVAADLSGPVVFHT
LQDSHLRGIEDIPSSRDSAVYLGCMVPNFFGTEFRIMDHRVDFRRTADIN
AAERTGLFELALIFYEVDDEEGRRQRPHASFQEFLGGFERVGSFCESFSV
FWGAFLFRLSVYIHLDAEPLYIGCAESLCLPACSGPWGTFFFWCLPGLTR
RAFEISRAAAAATCQNFLPQLFVLTLSRYW*
back to top

mRNA from alignment at P-wetherbeei_contig5282:1664..3930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5282.2.3 ID=mRNA_P-wetherbeei_contig5282.2.3|Name=mRNA_P-wetherbeei_contig5282.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2267bp|location=Sequence derived from alignment at P-wetherbeei_contig5282:1664..3930- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGAAAAGAACGGATTTTGGTAGGGGTGTAGGGGTGGCCCGGCGGATA
TCTGCGGACATGGTACTGAGTCCATTGTGATTCCAGACAAGGTATCGGGT
CTAACGAAAGTCCAGACACAAAAATCCACGCGCTTCAGAGCCGATTTATC
CAGTTGCTGCCGCTCGCTATAGCTGCGCACGAGAGATCTGCGGCAGCCGG
TTCAGTAGATGCCAAATCCGTCTGAACGACACCCGCGGCGTCAACAAGCA
GGGACGCTCAGCCATCCTAATGAGCGGCTATGCCGACTTGCTCGGCTTGG
AGCCGGAGGCAGCTCCGGCACAACCGAATGGCGCGGCGAGCAAAGCTCCC
GATCCTGATCCCTCCTCCTCACACGGCTCGGCTGGACGAGACGACGGACT
TCCTGCTTCATCCTCGGCGTTTGCTTCGACAGGGCACAGCGACGCAGGGC
GAGGCGCGCGACAAGATGCCATCGCGCGAAGGACTGTGGCCTTCGACGCT
GAGCGGGAAGAAAATGCAAGGGAGGCGATGGCGCAGCAGGGGCCGGTTAA
GGGGCCCGAGCAGTACTGGAAGCGCTTCGAAGGCGTCACGGACGGGGCTG
ACGCGCGCTACGTCATGCAATCCTTGCCTCCAGGAGCCGACCGGGGCGCG
GGCCGCGGCGTCGTCAGGGAGGTGAGAAAAACAGGACATACTTTTTCCTT
CCTCCTTCGAACAGGGCGCGTTATTCGGGCTGGAAATGAAACAGAATCCA
GTTTGGACGCCTCTCGCCTCCCTAACACGATGTTTTTGGCAGGCGCGGCA
CTTCGTGCACCTAGCAAAGCTGCGCTACTACATGGCACCGCCGGTGGAGG
ACCAGATGGTGTACTGCAGCCTGGAGCGGCACCGCGGCGGGCGCGTCACC
TCATTCGACCTGCGTCGCGACGACACGGGCGAGTTTCTGTTGGCAGCGTC
CGTCGCCGCTGACCTCTCAGGTCCTGTCGTCTTTCACACCCTCCAGGCGA
GGAAATAGTTGGTTGGCTTTGTATCGATTTTGGCTTCGTTAGGGTTTACG
GAAGGTCAAAGAGGGTGCTCCGGGTCAGGGCTTCGGAGGGAGAACAGCCC
TGTCTATGTTTCTCTGAAGTCTGAAGGTCCGCCCTAAGGTGCTCTCTTTC
CACCACGATAATTTGTTTTTGTTTAATCTCTGCTCAAAACGGGCAAATAG
TGCATCGTACTGTCTGGTCTGTTTTGGAACAGCGCGATGCGCGTTGAGGT
AATGCAAATTTTCACAACTCTCTCCATTTCCATCGGAGGCCGTGTCTATA
CTGATGCAGCTGCAATTGCGGTGGCCGCCTCTCTTTCTGCAGGACTCGCA
CCTGCGCGGCATAGAGGACATCCCGTCTTCGCGCGACTCCGCCGTCTACC
TCGGCTGCATGGTGCCGAACTTCTTCGGGACCGAGTTCAGAATAATGGAC
CACCGCGTGGACTTCCGCCGCACCGCCGACATCAACGCCGCCGAGCGGAC
GGGCCTCTTCGAGCTCGCCCTCATCTTTTACGAGGTGGACGACGAGGAAG
GGAGGAGGCAGCGGCCTCACGCGTCCTTTCAAGAATTTCTGGGGGGTTTT
GAAAGGGTTGGGAGTTTTTGCGAAAGCTTTTCTGTTTTTTGGGGGGCGTT
CCTCTTCCGTCTTTCAGTCTACATCCACCTTGATGCCGAACCATTGTATA
TTGGTTGTGCTGAGAGTTTGTGCTTGCCGGCTTGTTCTGGACCGTGGGGC
ACTTTCTTCTTCTGGTGCCTCCCGGGCTTGACGAGGCGTGCCTTTGAGAT
ATCACGCGCTGCTGCTGCGGCCACTTGCCAGAATTTCCTGCCACAGCTTT
TCGTCTTGACACTGTCCCGATATTGGTGATTGAACCATCACTTTTTCGCT
TGCTTAGACATCCGTTCTTGTTTTTCCGTATTCATTTCGACATGCCCGCA
TCATCCTCTTTGCTTTTTCCTCTCGCTCTTTCTTCCTCCAGGTGAATGTC
TTTGGGCGAGTTCCGAACTTTATGAAGGTGGTGATGCGGCGTCCGCGCCG
GTTGACCGCGGCAGCGGCGTCAAGTGTAAGCACCGCTGAAGAAACCATCT
CGAGCCCCGGCGCGAGAAGAGGAGGCACCGTACCAATCTTTACGCGATGG
GAGAACCTGAAGCGGCAACGTGGCACCGGTGGCGGCTTCGGCGGCGGCGG
CTTCGGCGGCGGCGGCGGCTTCGGCGGCAGCGGGTTCGGTGCAGCCCCAT
CCAGCAACAGCAACAGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5282:1664..3930-

>mRNA_P-wetherbeei_contig5282.2.3 ID=mRNA_P-wetherbeei_contig5282.2.3|Name=mRNA_P-wetherbeei_contig5282.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1143bp|location=Sequence derived from alignment at P-wetherbeei_contig5282:1664..3930- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGCTATGCCGACTTGCTCGGCTTGGAGCCGGAGGCAGCTCCGGC
ACAACCGAATGGCGCGGCGAGCAAAGCTCCCGATCCTGATCCCTCCTCCT
CACACGGCTCGGCTGGACGAGACGACGGACTTCCTGCTTCATCCTCGGCG
TTTGCTTCGACAGGGCACAGCGACGCAGGGCGAGGCGCGCGACAAGATGC
CATCGCGCGAAGGACTGTGGCCTTCGACGCTGAGCGGGAAGAAAATGCAA
GGGAGGCGATGGCGCAGCAGGGGCCGGTTAAGGGGCCCGAGCAGTACTGG
AAGCGCTTCGAAGGCGTCACGGACGGGGCTGACGCGCGCTACGTCATGCA
ATCCTTGCCTCCAGGAGCCGACCGGGGCGCGGGCCGCGGCGTCGTCAGGG
AGGCGCGGCACTTCGTGCACCTAGCAAAGCTGCGCTACTACATGGCACCG
CCGGTGGAGGACCAGATGGTGTACTGCAGCCTGGAGCGGCACCGCGGCGG
GCGCGTCACCTCATTCGACCTGCGTCGCGACGACACGGGCGAGTTTCTGT
TGGCAGCGTCCGTCGCCGCTGACCTCTCAGGTCCTGTCGTCTTTCACACC
CTCCAGGACTCGCACCTGCGCGGCATAGAGGACATCCCGTCTTCGCGCGA
CTCCGCCGTCTACCTCGGCTGCATGGTGCCGAACTTCTTCGGGACCGAGT
TCAGAATAATGGACCACCGCGTGGACTTCCGCCGCACCGCCGACATCAAC
GCCGCCGAGCGGACGGGCCTCTTCGAGCTCGCCCTCATCTTTTACGAGGT
GGACGACGAGGAAGGGAGGAGGCAGCGGCCTCACGCGTCCTTTCAAGAAT
TTCTGGGGGGTTTTGAAAGGGTTGGGAGTTTTTGCGAAAGCTTTTCTGTT
TTTTGGGGGGCGTTCCTCTTCCGTCTTTCAGTCTACATCCACCTTGATGC
CGAACCATTGTATATTGGTTGTGCTGAGAGTTTGTGCTTGCCGGCTTGTT
CTGGACCGTGGGGCACTTTCTTCTTCTGGTGCCTCCCGGGCTTGACGAGG
CGTGCCTTTGAGATATCACGCGCTGCTGCTGCGGCCACTTGCCAGAATTT
CCTGCCACAGCTTTTCGTCTTGACACTGTCCCGATATTGGTGA
back to top