mRNA_P-wetherbeei_contig52818.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52818.1.1
Unique NamemRNA_P-wetherbeei_contig52818.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52818.1.1 vs. uniprot
Match: X0VQU9_9ZZZZ (Uncharacterized protein (Fragment) n=2 Tax=marine sediment metagenome TaxID=412755 RepID=X0VQU9_9ZZZZ)

HSP 1 Score: 85.5 bits (210), Expect = 5.560e-17
Identity = 79/171 (46.20%), Postives = 91/171 (53.22%), Query Frame = 1 
Query:   13 TAAVTLNSNGGNILFSSTLAGGGQDLTIAAGTGAGTTTFTGAVSGLGDGAGAAFTAAS--TGLVRFMDTVGAASGLVSTSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTWSGFDGLTVTGAGTLSTAAVTLNSNGGNILFSSTLAGGGQDLTIAAGTGAGTTTFTGAV 519
            T A  LNS GGNI  SS + GG +DLT+AAG GAGTTT T           AA T A   TGLV F DT  A SG+V+++ +                           GLT+SGFDGLT  GA TLS AAVTLNSNG  I   S + GG Q+L   AGT  G  T +GAV
Sbjct:   30 TGATILNSGGGNIQISS-IVGGSEDLTLAAGIGAGTTTVTXXXXXXXXXXXAALTIADGVTGLVHFQDTFAAGSGIVASAATSSIRFDGDVTLTNGDTATSLPGPLQLDGLTFSGFDGLTF-GALTLSGAAVTLNSNGSAIQIDS-IVGGAQNLIFNAGT-TGAITVSGAV 196
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BLAST of mRNA_P-wetherbeei_contig52818.1.1 vs. uniprot
Match: UPI00163C6F8C (YDG domain-containing protein n=1 Tax=Teredinibacter haidensis TaxID=2731755 RepID=UPI00163C6F8C)

HSP 1 Score: 71.2 bits (173), Expect = 3.340e-11
Identity = 64/151 (42.38%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:   76 GGQDLTIAAGTGAGTTTFTGAVSG---LGDGAGAAFTAASTGLVRFMDTVGAASGLVSTSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTWSGFDGLTVTGAGTLSTAAVTLNSNGGNILFSSTLAGGGQDLTIAAGTGAGTTTFTGAV 519
            G  DLT+ +GT A  TTFTGAV G   +GDGAGA+     +G   F+ T+ A SG+ S                               G+T+ G+DGLTV GA TLST+AVT+N++ G++   STL  G QDL++ AG GA   TFTGAV
Sbjct: 2230 GPLDLTVNSGTAA--TTFTGAVGGDSAIGDGAGASLILLGSGDTVFVSTLDANSGITSVG---DVTFNGDVTLDDGDTASSLGGSVIFDGITFDGYDGLTVAGAVTLSTSAVTINTHDGDLDIQSTL-NGSQDLSVDAGAGA--VTFTGAV 2372
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BLAST of mRNA_P-wetherbeei_contig52818.1.1 vs. uniprot
Match: A0A352L6J4_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A352L6J4_9PLAN)

HSP 1 Score: 70.1 bits (170), Expect = 7.790e-11
Identity = 60/140 (42.86%), Postives = 74/140 (52.86%), Query Frame = 1 
Query:   76 GGQDLTIAAGTGAGTTTFTGAVSGLGDGAGAAFTAAS--TGLVRFMDTVGAASGLVSTSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTWSGFDGLTVTGAGTLSTAAVTLNSNGGNILFSSTLAGGGQDLTIAAGTG 489
            G QDLT+A G  AGTTT  G VS LGDG GAA    S  TGLV F  +  A SG+ + +GS                           GL WS FD + + G  TLS+AAV+L +N GN+ F+ T+  G QDL+  AGTG
Sbjct:  742 GAQDLTLAPGIAAGTTTIAGNVSNLGDGNGAALNIGSGITGLVWFQGSFAANSGITAFAGSSVRFNGDVTLGNGTVGTTLPGNLTLD-GLNWSSFDDVAL-GTVTLSSAAVSLTTNNGNLTFNGTV-NGAQDLSAVAGTG 878
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52818.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
X0VQU9_9ZZZZ5.560e-1746.20Uncharacterized protein (Fragment) n=2 Tax=marine ... [more]
UPI00163C6F8C3.340e-1142.38YDG domain-containing protein n=1 Tax=Teredinibact... [more]
A0A352L6J4_9PLAN7.790e-1142.86Uncharacterized protein (Fragment) n=2 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52818contigP-wetherbeei_contig52818:6..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.6909084-CDS-P-wetherbeei_contig52818:5..5241683186791.6909084-CDS-P-wetherbeei_contig52818:5..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52818 6..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52818.1.1prot_P-wetherbeei_contig52818.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52818 6..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52818.1.1

>prot_P-wetherbeei_contig52818.1.1 ID=prot_P-wetherbeei_contig52818.1.1|Name=mRNA_P-wetherbeei_contig52818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
ASLSTAAVTLNSNGGNILFSSTLAGGGQDLTIAAGTGAGTTTFTGAVSGL
GDGAGAAFTAASTGLVRFMDTVGAASGLVSTSGSGATRFDGDVTLTDGDT
ASSFAGTAQFDGLTWSGFDGLTVTGAGTLSTAAVTLNSNGGNILFSSTLA
GGGQDLTIAAGTGAGTTTFTGAV
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mRNA from alignment at P-wetherbeei_contig52818:6..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52818.1.1 ID=mRNA_P-wetherbeei_contig52818.1.1|Name=mRNA_P-wetherbeei_contig52818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig52818:6..524- (Phaeothamnion wetherbeei SAG_119_79)
GCTTCCTTGTCCACGGCGGCGGTGACGCTCAACTCGAACGGCGGCAATAT
CCTCTTCAGCTCGACTCTCGCTGGCGGCGGTCAGGACCTGACCATCGCAG
CCGGGACAGGTGCGGGGACGACGACCTTCACGGGTGCGGTGAGCGGCCTG
GGTGATGGCGCCGGGGCGGCGTTCACGGCTGCTTCGACCGGCTTGGTCCG
TTTCATGGACACGGTGGGTGCGGCCTCGGGGCTCGTCTCGACGAGCGGTT
CGGGCGCGACACGCTTTGATGGTGATGTGACGCTCACCGACGGTGATACG
GCGAGCAGCTTTGCCGGCACGGCGCAGTTTGATGGACTCACCTGGAGTGG
TTTCGATGGGCTGACGGTCACGGGCGCTGGCACGCTCTCCACCGCGGCAG
TCACGCTCAACTCGAACGGCGGCAATATCCTCTTCAGCTCGACTCTCGCT
GGCGGCGGTCAGGACCTGACCATCGCAGCCGGGACAGGTGCGGGGACGAC
GACCTTCACGGGCGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52818:6..524-

>mRNA_P-wetherbeei_contig52818.1.1 ID=mRNA_P-wetherbeei_contig52818.1.1|Name=mRNA_P-wetherbeei_contig52818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig52818:6..524- (Phaeothamnion wetherbeei SAG_119_79)
GCTTCCTTGTCCACGGCGGCGGTGACGCTCAACTCGAACGGCGGCAATAT
CCTCTTCAGCTCGACTCTCGCTGGCGGCGGTCAGGACCTGACCATCGCAG
CCGGGACAGGTGCGGGGACGACGACCTTCACGGGTGCGGTGAGCGGCCTG
GGTGATGGCGCCGGGGCGGCGTTCACGGCTGCTTCGACCGGCTTGGTCCG
TTTCATGGACACGGTGGGTGCGGCCTCGGGGCTCGTCTCGACGAGCGGTT
CGGGCGCGACACGCTTTGATGGTGATGTGACGCTCACCGACGGTGATACG
GCGAGCAGCTTTGCCGGCACGGCGCAGTTTGATGGACTCACCTGGAGTGG
TTTCGATGGGCTGACGGTCACGGGCGCTGGCACGCTCTCCACCGCGGCAG
TCACGCTCAACTCGAACGGCGGCAATATCCTCTTCAGCTCGACTCTCGCT
GGCGGCGGTCAGGACCTGACCATCGCAGCCGGGACAGGTGCGGGGACGAC
GACCTTCACGGGCGCGGTG
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