mRNA_P-wetherbeei_contig5281.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5281.1.1
Unique NamemRNA_P-wetherbeei_contig5281.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5281.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5281contigP-wetherbeei_contig5281:2..3051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3050
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000470.1
Cds size2484
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.6374228-UTR-P-wetherbeei_contig5281:1..3281683186791.6374228-UTR-P-wetherbeei_contig5281:1..328Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5281 2..328 -
1683186791.6600347-UTR-P-wetherbeei_contig5281:2812..30511683186791.6600347-UTR-P-wetherbeei_contig5281:2812..3051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5281 2813..3051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.6491454-CDS-P-wetherbeei_contig5281:328..28121683186791.6491454-CDS-P-wetherbeei_contig5281:328..2812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5281 329..2812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5281.1.1prot_P-wetherbeei_contig5281.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5281 329..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5281.1.1

>prot_P-wetherbeei_contig5281.1.1 ID=prot_P-wetherbeei_contig5281.1.1|Name=mRNA_P-wetherbeei_contig5281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=828bp
MGGGGGGGGSISGSCDFCTRRRRRCDGGRPCRECSRLGIQLTCRYEGPQR
PRKRVRSPDAAAPAAPAAIQEWNDHMAFPSGTNSAAAGGEGGSRLVLGPA
ENGHLSMFFCFFGRFMRFTTEAEVRAAVVDAALGGGGVGAIGASVAGGAA
VTAETSAACMWAAVAVGALLSGAPPPRVQRYARAARRLGTTVETSVTSMN
GGAAAAAGAAAAALARSRMHALLALLHDMLGQSRPADDYLAMARRAHAAA
YRPSAGSGQSRHVDELLGFLEAAQKERGATAGAVCGLGGVGGVNGVGGGI
PWLPALEAPCLHQGAALGALAALDRPAQVRFLGLLFGGGGEAPALRRCAE
AWHEVLGRADCTMASEEEEPGTPPCPLALATVKARLGWLNLALGRLGAGG
DRAEEALQLLRAFPGWVRLPRWGHTAHLLACVLAAAGLREAYEDLRSAYG
AHRLPELQPELPPYERRGDLRRACPECSHACGLIADAFPHAFPHVPPLTP
VVKAPKPAKQQQSSSMSAGSFGGGFGGGGGNGVGNGADEAAGVAARQQQQ
QVRAHKHVAPAGSSGSGAGGAETVMAGEVEATPTSVGAEEVTLGGAFGMF
GPGTRVMTDRSLHSEDYHLLLEMLEADAPYDVNMPAHFDWSHVPLEGQYV
TIGNGGVGEVAALVQALPAVDGVVIVKSAEDTPTAAAAVIVPAGSAGSTS
GGVDAGSVGSDGGVTAELAAVAEVAPLAPAGKGMEDPNHGGGGDGCSGGA
IGMADDFAEEVPAGGEEVRLDDGDGEVGMFGPGATVVEGGGGGCGGGGGG
GFSLGGMSHSGSHGTLAALDSVLWSNF*
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mRNA from alignment at P-wetherbeei_contig5281:2..3051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5281.1.1 ID=mRNA_P-wetherbeei_contig5281.1.1|Name=mRNA_P-wetherbeei_contig5281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3050bp|location=Sequence derived from alignment at P-wetherbeei_contig5281:2..3051- (Phaeothamnion wetherbeei SAG_119_79)
CTAGGTTTTCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCGGCGGC
GGCAGTGGCGGCGGGCGCAGCGGTGCCGGGCGAGGTGGCGGGGGGGTCCG
GCCGCTGTCGGCGGTCACGAACGATGACTCGGACGGCGCCTCTTTTTCCA
ACTCGGAGTCGGAGGACGCCGACTACGGCGAAGACCGCTCGTGGTCTTCG
GAGGAAGGCGGCAGCAGCGCTGTCGGCGGTGGCAGCAGCATGGGCGGCGG
CGGCGGCGGTGGCGGCAGCATCAGCGGCTCCTGCGACTTTTGCACGCGGC
GACGGAGGCGCTGCGATGGCGGGCGCCCGTGCCGGGAATGTTCGCGGCTC
GGCATCCAACTGACGTGCCGTTACGAGGGACCGCAGCGCCCGCGGAAGCG
CGTCCGCAGCCCGGACGCCGCCGCCCCTGCCGCTCCTGCCGCCATCCAGG
AGTGGAACGACCATATGGCGTTCCCGTCGGGCACGAACAGCGCGGCAGCC
GGGGGAGAGGGCGGGTCGCGGCTGGTGTTGGGTCCCGCCGAGAATGGCCA
CCTGTCAATGTTCTTCTGCTTTTTCGGCCGCTTCATGCGCTTCACGACGG
AGGCGGAAGTCCGCGCCGCGGTGGTGGATGCGGCGCTGGGCGGTGGCGGC
GTCGGGGCGATCGGCGCATCGGTCGCCGGTGGCGCTGCAGTGACTGCTGA
GACCTCGGCGGCATGCATGTGGGCGGCGGTGGCGGTCGGCGCACTGCTGT
CCGGCGCACCGCCGCCACGTGTCCAGCGCTACGCGCGCGCGGCGCGCCGG
CTTGGCACCACCGTCGAGACGTCCGTCACGAGCATGAATGGCGGCGCAGC
GGCGGCGGCCGGTGCGGCGGCAGCGGCGCTGGCCCGCTCCCGGATGCACG
CGCTGCTGGCGCTACTCCATGACATGCTGGGACAGTCGCGGCCCGCCGAC
GACTACCTGGCGATGGCACGGCGCGCGCATGCGGCGGCATACCGTCCGTC
AGCCGGCAGTGGCCAGTCGCGCCACGTTGACGAGCTCCTGGGCTTCCTCG
AGGCGGCCCAGAAGGAGCGCGGCGCCACGGCAGGCGCCGTCTGCGGCCTC
GGCGGCGTCGGCGGCGTGAACGGTGTCGGCGGCGGCATACCGTGGCTGCC
GGCGCTCGAGGCGCCGTGCCTGCACCAGGGGGCGGCCCTCGGCGCGCTGG
CGGCACTGGACCGGCCCGCGCAGGTACGCTTCCTGGGGCTGCTCTTCGGC
GGCGGCGGCGAGGCGCCCGCGCTGCGGCGCTGCGCAGAGGCGTGGCACGA
GGTGCTGGGGCGCGCCGATTGCACCATGGCATCTGAGGAGGAGGAACCCG
GGACGCCGCCGTGCCCGCTAGCGCTGGCGACGGTCAAGGCCCGCCTCGGC
TGGCTGAATCTGGCGCTGGGGCGGCTTGGCGCCGGCGGCGACCGGGCGGA
GGAGGCGCTGCAGCTCCTGCGGGCATTTCCTGGGTGGGTGCGGCTGCCGC
GCTGGGGCCACACGGCGCACCTGCTGGCCTGTGTGCTGGCCGCCGCGGGG
CTGCGGGAGGCCTACGAGGACCTGCGGTCGGCGTACGGCGCCCACCGCTT
GCCGGAGCTGCAGCCTGAGCTGCCACCATACGAGCGGCGGGGCGACCTAC
GGCGGGCGTGTCCCGAGTGCAGCCACGCCTGCGGCCTCATCGCTGACGCC
TTTCCGCACGCCTTCCCGCACGTGCCGCCGCTGACGCCCGTCGTCAAGGC
GCCTAAGCCTGCCAAGCAGCAGCAGTCCTCGTCAATGTCGGCGGGCAGTT
TTGGCGGTGGCTTCGGCGGCGGCGGCGGCAACGGCGTCGGCAATGGCGCC
GACGAGGCGGCCGGGGTCGCGGCGCGGCAGCAGCAGCAGCAGGTCAGGGC
CCATAAGCACGTTGCGCCGGCGGGCAGCAGCGGCAGTGGCGCTGGCGGCG
CGGAAACCGTCATGGCGGGCGAGGTGGAAGCGACGCCGACGTCGGTCGGC
GCGGAGGAGGTGACGCTCGGCGGCGCCTTCGGCATGTTCGGCCCCGGCAC
GCGGGTCATGACGGACCGGTCGCTGCACTCGGAGGACTACCACCTGCTGC
TCGAAATGCTCGAAGCGGACGCGCCCTACGACGTCAACATGCCGGCGCAC
TTCGACTGGTCGCACGTGCCGCTGGAAGGGCAGTACGTCACCATCGGCAA
CGGCGGCGTCGGCGAGGTGGCCGCGCTCGTGCAGGCGCTGCCGGCGGTCG
ACGGAGTTGTCATCGTAAAGAGCGCCGAGGACACCCCGACCGCCGCTGCC
GCCGTCATCGTCCCCGCCGGCAGCGCCGGCAGCACCAGCGGTGGCGTGGA
CGCGGGCAGCGTTGGCTCCGACGGCGGCGTCACGGCCGAACTTGCTGCGG
TGGCTGAGGTCGCGCCCTTGGCGCCTGCTGGCAAGGGCATGGAAGACCCT
AATCACGGCGGTGGCGGCGACGGCTGCAGTGGCGGCGCAATCGGCATGGC
GGACGACTTTGCGGAGGAGGTGCCGGCGGGCGGCGAGGAGGTCCGACTGG
ACGACGGCGACGGCGAGGTCGGCATGTTCGGCCCTGGCGCCACCGTCGTG
GAGGGCGGCGGCGGCGGCTGCGGCGGCGGCGGTGGCGGCGGTTTCTCCCT
GGGGGGCATGTCACACTCCGGCAGCCACGGGACGCTGGCGGCACTCGACT
CGGTGCTCTGGTCCAACTTTTGATCTCCTGCTTCTTCCTTGGCTGGTTCG
GTGCCCGGAATTCTATCGTCGTGACTGATCGCCGTACGCGGCGGAGGGGC
GGCAGCGGCGGCGGTGCGGCGGACAGCGGCTTTGGCGGCGAGCGGCGCCT
TCAAGGCAGCAGACTGCGGCTGGAAGTGGTGGCAGGCTGCTTCGGGCAGC
GGGAAGCGGAGGCAGCAGTTTTTCGTGGTGTGGAAGGAAACGGCCGCCTA
GGTGTGCCCGAATTACCAGCGGCTGCGCACGGTTGGGCATGCCGGCAGGA
GAGCGGCCGCGGGCGGTCGCCTGCCGCAGCAGCAACGGGCGGCGCCGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5281:2..3051-

>mRNA_P-wetherbeei_contig5281.1.1 ID=mRNA_P-wetherbeei_contig5281.1.1|Name=mRNA_P-wetherbeei_contig5281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2484bp|location=Sequence derived from alignment at P-wetherbeei_contig5281:2..3051- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGCGGCGGCGGCGGTGGCGGCAGCATCAGCGGCTCCTGCGACTT
TTGCACGCGGCGACGGAGGCGCTGCGATGGCGGGCGCCCGTGCCGGGAAT
GTTCGCGGCTCGGCATCCAACTGACGTGCCGTTACGAGGGACCGCAGCGC
CCGCGGAAGCGCGTCCGCAGCCCGGACGCCGCCGCCCCTGCCGCTCCTGC
CGCCATCCAGGAGTGGAACGACCATATGGCGTTCCCGTCGGGCACGAACA
GCGCGGCAGCCGGGGGAGAGGGCGGGTCGCGGCTGGTGTTGGGTCCCGCC
GAGAATGGCCACCTGTCAATGTTCTTCTGCTTTTTCGGCCGCTTCATGCG
CTTCACGACGGAGGCGGAAGTCCGCGCCGCGGTGGTGGATGCGGCGCTGG
GCGGTGGCGGCGTCGGGGCGATCGGCGCATCGGTCGCCGGTGGCGCTGCA
GTGACTGCTGAGACCTCGGCGGCATGCATGTGGGCGGCGGTGGCGGTCGG
CGCACTGCTGTCCGGCGCACCGCCGCCACGTGTCCAGCGCTACGCGCGCG
CGGCGCGCCGGCTTGGCACCACCGTCGAGACGTCCGTCACGAGCATGAAT
GGCGGCGCAGCGGCGGCGGCCGGTGCGGCGGCAGCGGCGCTGGCCCGCTC
CCGGATGCACGCGCTGCTGGCGCTACTCCATGACATGCTGGGACAGTCGC
GGCCCGCCGACGACTACCTGGCGATGGCACGGCGCGCGCATGCGGCGGCA
TACCGTCCGTCAGCCGGCAGTGGCCAGTCGCGCCACGTTGACGAGCTCCT
GGGCTTCCTCGAGGCGGCCCAGAAGGAGCGCGGCGCCACGGCAGGCGCCG
TCTGCGGCCTCGGCGGCGTCGGCGGCGTGAACGGTGTCGGCGGCGGCATA
CCGTGGCTGCCGGCGCTCGAGGCGCCGTGCCTGCACCAGGGGGCGGCCCT
CGGCGCGCTGGCGGCACTGGACCGGCCCGCGCAGGTACGCTTCCTGGGGC
TGCTCTTCGGCGGCGGCGGCGAGGCGCCCGCGCTGCGGCGCTGCGCAGAG
GCGTGGCACGAGGTGCTGGGGCGCGCCGATTGCACCATGGCATCTGAGGA
GGAGGAACCCGGGACGCCGCCGTGCCCGCTAGCGCTGGCGACGGTCAAGG
CCCGCCTCGGCTGGCTGAATCTGGCGCTGGGGCGGCTTGGCGCCGGCGGC
GACCGGGCGGAGGAGGCGCTGCAGCTCCTGCGGGCATTTCCTGGGTGGGT
GCGGCTGCCGCGCTGGGGCCACACGGCGCACCTGCTGGCCTGTGTGCTGG
CCGCCGCGGGGCTGCGGGAGGCCTACGAGGACCTGCGGTCGGCGTACGGC
GCCCACCGCTTGCCGGAGCTGCAGCCTGAGCTGCCACCATACGAGCGGCG
GGGCGACCTACGGCGGGCGTGTCCCGAGTGCAGCCACGCCTGCGGCCTCA
TCGCTGACGCCTTTCCGCACGCCTTCCCGCACGTGCCGCCGCTGACGCCC
GTCGTCAAGGCGCCTAAGCCTGCCAAGCAGCAGCAGTCCTCGTCAATGTC
GGCGGGCAGTTTTGGCGGTGGCTTCGGCGGCGGCGGCGGCAACGGCGTCG
GCAATGGCGCCGACGAGGCGGCCGGGGTCGCGGCGCGGCAGCAGCAGCAG
CAGGTCAGGGCCCATAAGCACGTTGCGCCGGCGGGCAGCAGCGGCAGTGG
CGCTGGCGGCGCGGAAACCGTCATGGCGGGCGAGGTGGAAGCGACGCCGA
CGTCGGTCGGCGCGGAGGAGGTGACGCTCGGCGGCGCCTTCGGCATGTTC
GGCCCCGGCACGCGGGTCATGACGGACCGGTCGCTGCACTCGGAGGACTA
CCACCTGCTGCTCGAAATGCTCGAAGCGGACGCGCCCTACGACGTCAACA
TGCCGGCGCACTTCGACTGGTCGCACGTGCCGCTGGAAGGGCAGTACGTC
ACCATCGGCAACGGCGGCGTCGGCGAGGTGGCCGCGCTCGTGCAGGCGCT
GCCGGCGGTCGACGGAGTTGTCATCGTAAAGAGCGCCGAGGACACCCCGA
CCGCCGCTGCCGCCGTCATCGTCCCCGCCGGCAGCGCCGGCAGCACCAGC
GGTGGCGTGGACGCGGGCAGCGTTGGCTCCGACGGCGGCGTCACGGCCGA
ACTTGCTGCGGTGGCTGAGGTCGCGCCCTTGGCGCCTGCTGGCAAGGGCA
TGGAAGACCCTAATCACGGCGGTGGCGGCGACGGCTGCAGTGGCGGCGCA
ATCGGCATGGCGGACGACTTTGCGGAGGAGGTGCCGGCGGGCGGCGAGGA
GGTCCGACTGGACGACGGCGACGGCGAGGTCGGCATGTTCGGCCCTGGCG
CCACCGTCGTGGAGGGCGGCGGCGGCGGCTGCGGCGGCGGCGGTGGCGGC
GGTTTCTCCCTGGGGGGCATGTCACACTCCGGCAGCCACGGGACGCTGGC
GGCACTCGACTCGGTGCTCTGGTCCAACTTTTGA
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