mRNA_P-wetherbeei_contig52803.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52803.1.1
Unique NamemRNA_P-wetherbeei_contig52803.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A7V9B832_9CHLR (CRISPR-associated exonuclease Cas4 n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B832_9CHLR)

HSP 1 Score: 184 bits (466), Expect = 2.390e-56
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELFHPND 387
            AD+VEW G+TP+PVEYKVG+ R+WGHE +QLCAQA+CL E+LG  VP+GAIY  GS+RRR+V FT  D   VE +  ++R ML   RLP AVDDARCPNCSLVDAC P IA+ PA+IRG +AELFHP +
Sbjct:   88 ADIVEWRGDTPYPVEYKVGKKRAWGHEVVQLCAQAICLAEILGTPVPSGAIYYAGSKRRRQVTFTPEDYRLVETSAEEIRLMLEGDRLPHAVDDARCPNCSLVDACAPGIASRPAIIRGHYAELFHPRE 216          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A7V3XEJ6_9BACT (CRISPR-associated exonuclease Cas4 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XEJ6_9BACT)

HSP 1 Score: 148 bits (373), Expect = 3.160e-42
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELFHPND 387
            ADVVE+HGETP+P+EYK G  R WGHE LQLCAQA+CLEEM    VP GAIY  GSRRRREVVF  + R  V      +R +L  + LPPAV+DARC +CSL D+C P++    A +R   + LF  ND
Sbjct:   85 ADVVEFHGETPYPIEYKAGARRKWGHEELQLCAQAMCLEEMTRQPVPCGAIYHHGSRRRREVVFDESLRQRVVETVAAIRQLLTTEMLPPAVNDARCEHCSLEDSCLPKVVGEAARVRAIQSSLFQVND 213          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A7C5F7V2_9BACT (CRISPR-associated exonuclease Cas4 n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C5F7V2_9BACT)

HSP 1 Score: 145 bits (366), Expect = 3.500e-41
Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELFHPNDGP 393
            ADVVE+HG+ PFPVEYK G  R WGH+ LQLCAQA+CLEEM G  V  GAIY  GSRRRREVVF  A R  V  A  D+R +LA   LPPAV+DARC +CSL+D+C P +      +R   A LF  ++ P
Sbjct:   84 ADVVEFHGQQPFPVEYKAGPRRRWGHDDLQLCAQALCLEEMTGQTVRRGAIYHHGSRRRREVVFDDALRQRVVEAVADIRQILAAGVLPPAVNDARCKHCSLIDSCLPSVIGEAGRVRALQASLFRVSEPP 214          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: UPI001AC07BD0 (CRISPR-associated exonuclease Cas4 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC07BD0)

HSP 1 Score: 138 bits (348), Expect = 1.170e-38
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELF 375
            AD+VE+HGETP+PVEYK G++R+  HEALQLCAQA+CLEEM GV V  GA++  GSR RREVVFT A R  VE+A   VR MLA   +PP V+D RC +CSL ++C P + A     R    ELF
Sbjct:   77 ADLVEFHGETPYPVEYKSGKHRAGHHEALQLCAQAICLEEMFGVPVGQGALFWHGSRERREVVFTDAMREHVEKAVEGVRGMLAQSTIPPPVNDKRCTHCSLRESCLPAVVAEKDRSRKAARELF 201          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: Q39WR4_GEOMG (CRISPR-associated exonuclease Cas4 n=3 Tax=Geobacter TaxID=28231 RepID=Q39WR4_GEOMG)

HSP 1 Score: 135 bits (340), Expect = 1.940e-37
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELF 375
            AD+VE+HGETP+PVEYK GR+R   HEALQLCAQA+CLEEM GV V  GA++  GSR RREVVFT   R  VE+A   V A++A   +PP V+D RC +CSL ++C P + A     R    ELF
Sbjct:   78 ADLVEFHGETPYPVEYKSGRHRDGRHEALQLCAQAICLEEMFGVAVEKGALFWHGSRERREVVFTDVIREHVEKAAEGVFALIAQSTVPPPVNDKRCTHCSLKESCLPAVVAEKDRSRRVARELF 202          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A2M7F9J5_9BACT (CRISPR-associated exonuclease Cas4 n=2 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A2M7F9J5_9BACT)

HSP 1 Score: 134 bits (336), Expect = 8.960e-37
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELF 375
            AD+VE+HGE P+PVEYK GR++++ ++ +QLCAQAVCLE+MLGV+V  GA+Y  GSR R+EVVFT   R  VE    +V AM+A++RLPP  +D RC +CSL D+C P   A+  +I+    ELF
Sbjct:   77 ADLVEFHGEIPYPVEYKSGRHKTFQNDYVQLCAQAVCLEDMLGVKVEKGALYWHGSRERKEVVFTDELRRRVEDVAAEVHAMIAEKRLPPPANDGRCEDCSLKDSCMPGAIANKGMIKKAEMELF 201          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A4Y9FD94_9DEIN (CRISPR-associated exonuclease Cas4 n=2 Tax=Thermus TaxID=270 RepID=A0A4Y9FD94_9DEIN)

HSP 1 Score: 133 bits (334), Expect = 1.180e-36
Identity = 71/114 (62.28%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHP 342
            ADVVE+HG  P+PVE+KVG  R+   + +QLCAQA+CLEEMLGV VP GA++   SRRRREV FT   RA VER   +VRA+L   RLPP V DARC +CSLVDAC P +AA P
Sbjct:   76 ADVVEFHGGAPYPVEHKVGPRRARLADEVQLCAQALCLEEMLGVEVPRGALFYRASRRRREVRFTPELRALVERTVVEVRALLESARLPPPVHDARCRDCSLVDACMPHLAAWP 189          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A7X4DWB4_9CHLR (CRISPR-associated exonuclease Cas4 n=6 Tax=Bacteria TaxID=2 RepID=A0A7X4DWB4_9CHLR)

HSP 1 Score: 132 bits (333), Expect = 3.420e-36
Identity = 75/128 (58.59%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 ADVVEWH-GETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELFHP 381
            ADVVE    E PFPVEYKVGR R   H  LQLCAQA+CLEEMLG  VP GAIY+   RRR  V  T A R        ++R  L DQ LPPAVDDARCP CSLV+AC P++AA P  +RG    LF P
Sbjct:   86 ADVVELRPDEPPFPVEYKVGRRRP-PHADLQLCAQALCLEEMLGTEVPEGAIYSHAERRRYRVPLTEALREQTVALVVEIREQLRDQALPPAVDDARCPPCSLVNACLPQVAAQPHRLRGMQGSLFRP 212          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A562WQV4_9DELT (CRISPR-associated exonuclease Cas4 n=1 Tax=Geobacter argillaceus TaxID=345631 RepID=A0A562WQV4_9DELT)

HSP 1 Score: 132 bits (331), Expect = 4.560e-36
Identity = 71/125 (56.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELF 375
            AD+VE+HG+ P+PVEYK GR R   HEALQLCAQA+CLEEM GV V  GA+Y  GSR RREVVFT A RA VER    V  ML +  +PP V+D RC  CSL ++C P + A     R    ELF
Sbjct:   79 ADLVEFHGDVPYPVEYKSGRQRKGHHEALQLCAQAICLEEMFGVPVEKGALYWHGSRERREVVFTDAMRAEVERVADAVGNMLLNGLVPPPVNDKRCEGCSLNESCLPAVVAEKERSRRAARELF 203          
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Match: A0A521UYX1_9CHLR (CRISPR-associated exonuclease Cas4 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A521UYX1_9CHLR)

HSP 1 Score: 132 bits (333), Expect = 7.490e-36
Identity = 74/129 (57.36%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGAIYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNCSLVDACTPRIAAHPAVIRGFFAELFHPND 387
            AD+VE+  E P+PVEYKVGR R   H  LQLCAQA+CLEEMLGV VP GAI+  G RRR EV F    R     A   +RAML  +RLP A +DARCPNCSL D C P + A  A +RG    LFHP D
Sbjct:  105 ADLVEFRPEGPYPVEYKVGR-RHGPHADLQLCAQALCLEEMLGVIVPRGAIFYRGVRRRHEVAFDDELRRQTREAIEGLRAMLEMERLPAAPNDARCPNCSLGDVCLPAVVAERARLRGLQGALFHPYD 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52803.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9B832_9CHLR2.390e-5665.12CRISPR-associated exonuclease Cas4 n=1 Tax=Chlorof... [more]
A0A7V3XEJ6_9BACT3.160e-4256.59CRISPR-associated exonuclease Cas4 n=1 Tax=bacteri... [more]
A0A7C5F7V2_9BACT3.500e-4157.25CRISPR-associated exonuclease Cas4 n=1 Tax=Nitrosp... [more]
UPI001AC07BD01.170e-3857.60CRISPR-associated exonuclease Cas4 n=1 Tax=Anaerol... [more]
Q39WR4_GEOMG1.940e-3756.00CRISPR-associated exonuclease Cas4 n=3 Tax=Geobact... [more]
A0A2M7F9J5_9BACT8.960e-3753.60CRISPR-associated exonuclease Cas4 n=2 Tax=unclass... [more]
A0A4Y9FD94_9DEIN1.180e-3662.28CRISPR-associated exonuclease Cas4 n=2 Tax=Thermus... [more]
A0A7X4DWB4_9CHLR3.420e-3658.59CRISPR-associated exonuclease Cas4 n=6 Tax=Bacteri... [more]
A0A562WQV4_9DELT4.560e-3656.80CRISPR-associated exonuclease Cas4 n=1 Tax=Geobact... [more]
A0A521UYX1_9CHLR7.490e-3657.36CRISPR-associated exonuclease Cas4 n=1 Tax=Chlorof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52803contigP-wetherbeei_contig52803:127..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog269799.Gmet_1070
Preferred namecas4
PFAMsCas_Cas4
Model size417
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K07464
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.18e-38
EggNOG OGsCOG1468@1|root,COG1468@2|Bacteria,1MX2S@1224|Proteobacteria,42R51@68525|delta/epsilon subdivisions,2WMQZ@28221|Deltaproteobacteria
EC3.1.12.1
DescriptionTIGRFAM CRISPR-associated protein Cas4
Cds size417
COG categoryL
BRITEko00000,ko01000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.5307364-CDS-P-wetherbeei_contig52803:126..5431683186791.5307364-CDS-P-wetherbeei_contig52803:126..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52803 127..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52803.1.1prot_P-wetherbeei_contig52803.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52803 127..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52803.1.1

>prot_P-wetherbeei_contig52803.1.1 ID=prot_P-wetherbeei_contig52803.1.1|Name=mRNA_P-wetherbeei_contig52803.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
ADVVEWHGETPFPVEYKVGRNRSWGHEALQLCAQAVCLEEMLGVRVPAGA
IYAVGSRRRREVVFTAADRAAVERATRDVRAMLADQRLPPAVDDARCPNC
SLVDACTPRIAAHPAVIRGFFAELFHPNDGPSDRSERP*
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mRNA from alignment at P-wetherbeei_contig52803:127..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52803.1.1 ID=mRNA_P-wetherbeei_contig52803.1.1|Name=mRNA_P-wetherbeei_contig52803.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig52803:127..543- (Phaeothamnion wetherbeei SAG_119_79)
GCGGATGTCGTCGAGTGGCACGGGGAGACGCCCTTCCCGGTCGAGTACAA AGTCGGCAGGAACCGGTCGTGGGGGCACGAGGCGCTGCAACTCTGCGCGC AGGCCGTCTGCCTGGAGGAGATGCTCGGCGTGCGCGTGCCGGCGGGAGCG ATCTACGCCGTCGGCTCGCGACGGCGGCGGGAGGTCGTCTTCACCGCGGC GGACCGGGCGGCGGTGGAGCGGGCGACACGGGATGTGCGGGCGATGCTGG CGGATCAACGCCTGCCGCCCGCCGTGGATGACGCCCGCTGCCCGAACTGC TCGCTGGTGGATGCCTGCACGCCCCGGATCGCCGCCCACCCGGCGGTGAT CCGGGGCTTCTTTGCGGAGCTGTTCCACCCGAACGACGGCCCGTCTGACC GCTCCGAACGTCCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52803:127..543-

>mRNA_P-wetherbeei_contig52803.1.1 ID=mRNA_P-wetherbeei_contig52803.1.1|Name=mRNA_P-wetherbeei_contig52803.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig52803:127..543- (Phaeothamnion wetherbeei SAG_119_79)
GCGGATGTCGTCGAGTGGCACGGGGAGACGCCCTTCCCGGTCGAGTACAA
AGTCGGCAGGAACCGGTCGTGGGGGCACGAGGCGCTGCAACTCTGCGCGC
AGGCCGTCTGCCTGGAGGAGATGCTCGGCGTGCGCGTGCCGGCGGGAGCG
ATCTACGCCGTCGGCTCGCGACGGCGGCGGGAGGTCGTCTTCACCGCGGC
GGACCGGGCGGCGGTGGAGCGGGCGACACGGGATGTGCGGGCGATGCTGG
CGGATCAACGCCTGCCGCCCGCCGTGGATGACGCCCGCTGCCCGAACTGC
TCGCTGGTGGATGCCTGCACGCCCCGGATCGCCGCCCACCCGGCGGTGAT
CCGGGGCTTCTTTGCGGAGCTGTTCCACCCGAACGACGGCCCGTCTGACC
GCTCCGAACGTCCGTAA
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