mRNA_P-wetherbeei_contig5280.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5280.2.1
Unique NamemRNA_P-wetherbeei_contig5280.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5280.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5280contigP-wetherbeei_contig5280:3233..3438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.4157228-CDS-P-wetherbeei_contig5280:3232..33221683186791.4157228-CDS-P-wetherbeei_contig5280:3232..3322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5280 3233..3322 +
1683186791.424642-CDS-P-wetherbeei_contig5280:3356..34371683186791.424642-CDS-P-wetherbeei_contig5280:3356..3437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5280 3357..3437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5280.2.1prot_P-wetherbeei_contig5280.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5280 3233..3437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5280.2.1

>prot_P-wetherbeei_contig5280.2.1 ID=prot_P-wetherbeei_contig5280.2.1|Name=mRNA_P-wetherbeei_contig5280.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
EAILASLPGGGNDAVAGNDSLIELARNFRTVEGHGQRLCSVPRRRSAPRQ
PTGVINE
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mRNA from alignment at P-wetherbeei_contig5280:3233..3438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5280.2.1 ID=mRNA_P-wetherbeei_contig5280.2.1|Name=mRNA_P-wetherbeei_contig5280.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=206bp|location=Sequence derived from alignment at P-wetherbeei_contig5280:3233..3438+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCTATCTTGGCAAGCCTGCCCGGAGGTGGGAATGATGCCGTGGCGGG
GAATGACAGCCTCATTGAATTGGCGAGAAACTTCCGGACGGTGGGAAAGG
GCAAGAAGGGCGGAGCGGCGGAAGGTGGAGGGGCACGGGCAGCGCCTCTG
CTCAGTTCCAAGGCGCCGAAGCGCGCCAAGGCAGCCGACGGGCGTGATAA
ATGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5280:3233..3438+

>mRNA_P-wetherbeei_contig5280.2.1 ID=mRNA_P-wetherbeei_contig5280.2.1|Name=mRNA_P-wetherbeei_contig5280.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig5280:3233..3438+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCTATCTTGGCAAGCCTGCCCGGAGGTGGGAATGATGCCGTGGCGGG
GAATGACAGCCTCATTGAATTGGCGAGAAACTTCCGGACGGTGGAGGGGC
ACGGGCAGCGCCTCTGCTCAGTTCCAAGGCGCCGAAGCGCGCCAAGGCAG
CCGACGGGCGTGATAAATGAA
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