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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1818 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1020 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186791.2186928-UTR-P-wetherbeei_contig528:7029..7309 | 1683186791.2186928-UTR-P-wetherbeei_contig528:7029..7309 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig528 7030..7309 - |
| 1683186791.2273254-UTR-P-wetherbeei_contig528:7792..7877 | 1683186791.2273254-UTR-P-wetherbeei_contig528:7792..7877 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig528 7793..7877 - |
| 1683186791.270268-UTR-P-wetherbeei_contig528:9197..9630 | 1683186791.270268-UTR-P-wetherbeei_contig528:9197..9630 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig528 9198..9630 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186791.2354429-CDS-P-wetherbeei_contig528:7877..8208 | 1683186791.2354429-CDS-P-wetherbeei_contig528:7877..8208 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig528 7878..8208 - |
| 1683186791.2529204-CDS-P-wetherbeei_contig528:8508..9197 | 1683186791.2529204-CDS-P-wetherbeei_contig528:8508..9197 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig528 8509..9197 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig528.5.2 >prot_P-wetherbeei_contig528.5.2 ID=prot_P-wetherbeei_contig528.5.2|Name=mRNA_P-wetherbeei_contig528.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MCIAVAAFPLPPTESPHLPHGAVVPLKQPSQRQRRRGSIHEDQALAQPGL
LSLILSFAGKGEHLFFSGVSRGFRAAWLAGGAEDDAAGARAAAAAADAGG
GAAGNAGRMTTTLAAVIQSVPRVEWALGSGLPWDRGLIRAAAMSEDGTAV
LEWALESGRLLVPVPGADDPLGALCAWAAGRGRLANLRWARERGFPWGDS
LCRVASRGGHLDVLQWARANGCPWDRFVCSYAASGGHLAVLKWARDHGCP
WGEQTCIEAAGSGHLEVLQYLREHGCPWGKQTCQNAALHGHLEVLRWARE
NGCPWDGYMCFCAGQCADPTILEWVHANGCPCEHNEPTS* back to topmRNA from alignment at P-wetherbeei_contig528:7030..9630- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig528.5.2 ID=mRNA_P-wetherbeei_contig528.5.2|Name=mRNA_P-wetherbeei_contig528.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2601bp|location=Sequence derived from alignment at P-wetherbeei_contig528:7030..9630- (Phaeothamnion wetherbeei SAG_119_79)
ACATCCCCGTTCGACCCACCTCGCCGCGCGCACTCGCGAGGAGAGCAAGC
ATCATTCCTCCTCCGGAACAAGCGATATCAGTGGAAGGTGAGGGAGCTCG
TGGGAATGATCTTTTGATCGGGCACAAAATATTTAGTAGCCGAATGCGGT
CGAAGTGGCCGTCGAGATTTAGAGTTTGTGCTGACACTAGGAGCGCTACC
CCATTCCCATCCCTTCTCTCATCATTCCGATGAGGTGGCTTTAGACAATT
GTCTTTTTTAACTACAACAGGTGCCTATAATAGAGATACCTCCGTCGCCA
ACAGGGTGACCTCAGGCAAAGAAAAAGGCACCCATAGGCCGTGGAGAGCT
AGAAGATGAATACCCTTGCCTAACATACTCGCGCGTTCCCTCTCGGACAA
CACTTTAAAAACACACACAAAATACCCTCAGGGATGTGCATCGCCGTGGC
CGCCTTCCCGCTGCCGCCAACGGAGTCGCCCCATCTTCCGCACGGCGCCG
TCGTTCCGCTCAAGCAGCCGTCGCAGCGGCAGCGGCGGCGGGGCAGCATC
CACGAAGATCAAGCCCTCGCCCAGCCCGGCCTCCTCTCCCTCATCCTGTC
GTTCGCCGGCAAGGGAGAGCACCTCTTCTTCTCCGGCGTCTCACGCGGCT
TTCGCGCCGCCTGGCTCGCCGGTGGCGCCGAGGACGACGCGGCGGGAGCA
AGAGCTGCAGCGGCGGCAGCGGACGCTGGCGGCGGGGCTGCCGGCAATGC
CGGGCGGATGACGACGACGCTGGCGGCGGTCATCCAGTCCGTGCCGCGCG
TCGAGTGGGCGCTTGGCTCGGGCCTGCCCTGGGACCGCGGCCTGATCCGC
GCCGCGGCCATGTCTGAGGACGGCACAGCCGTACTCGAGTGGGCGCTCGA
GTCCGGCCGGCTCCTCGTGCCTGTCCCGGGCGCGGACGACCCCCTCGGTG
CGCTCTGCGCGTGGGCGGCCGGCCGGGGGCGGCTGGCCAACTTGCGCTGG
GCACGCGAACGCGGATTTCCCTGGGGCGATTCGCTGTGCCGCGTCGCATC
GCGTGGCGGTCACCTCGACGTACTGCAGTGGGCGCGGGCCAACGGCTGCC
CCTGGGACCGCTTCGTATGCTCGTGAGTCGTGCGCTTGAGGCGGTTTTGT
CCGCAGCGGAACTTTTCGCGGCCGGCCGTTTGCTGGGCCAGGGTGCTAGT
TTCCAATTGGAGTTTCGTTGCTTACTATGGTGTAACTATCTTTCTCCCTT
CGAAATGCCCGAGAAAGGTGAACGCGGATGCGGCCTGGACCGTTTCGGCT
GCTAAGAATCGCTTGATTCCCTTTCGGGGTGGCTCTCCAGAGCCAGACTT
CCTCTGTCCAGCTCTCGCCTAACCGAGTCTCAATATCTCCGAATCTTTCT
CAAACGCTCGAATCTGCCGCAGGTACGCGGCGAGCGGCGGCCACCTGGCC
GTGCTCAAGTGGGCGCGCGACCACGGCTGCCCCTGGGGCGAGCAGACCTG
CATCGAGGCCGCCGGCAGCGGGCACCTCGAAGTGCTACAGTACCTCCGGG
AGCACGGCTGCCCCTGGGGCAAGCAGACCTGCCAAAACGCCGCGCTGCAT
GGCCACCTGGAGGTGCTGCGCTGGGCGCGCGAGAACGGGTGCCCGTGGGA
CGGCTACATGTGCTTTTGCGCAGGGCAATGCGCTGACCCCACGATTCTCG
AGTGGGTGCACGCCAACGGCTGCCCCTGCGAACACAACGAGCCGACCTCG
TAAGCGAAGCAGGGAGGCAAGACGGGCGTGAGGCCGGCGTGGCGGGCGCC
ATCGTGAGGCAACCGTGCGATTCGGCGTCATGAGACGGGTGATTTTGCTG
GAATTGGCGAGTGGTTTCATTGATTCGGAGAGCGAGCATTGTGGTAGCGT
GCGGGCGTTTGTTTCTGTGTAGGCTGCGGGGCTTTCAGCCAAGGTATGGG
TGGATTCTTCCGAAGGTCGGCGCTTGCCAATCCTTTCGGTCCCTCTTGCG
TTTTGGCCCCAGGTGGGCTCCGGGTGTCATTTATCTCTCTCTTCACTAAT
AAACGTAACCGAACCTCTTCCACTGGTCGTATGTCAAGGCGTCTCTGTGT
CTGGCGTTTCCTGCTCGCTTTTGAGCAGTTTTTCCTGCCTCGTCTCTTCC
CCTTGTTCGGGCGTTATTCCAAATTTTCAAAGTCCAATTTCTTTTCCGAC
TCGGCTTTATTACCGCCGCCGTGTCTTTTTGGGGGCGCTGTGCTTTCTAG
TTATCGGGAGATCTGATCGTGTTTCATCTGTCAGCAATTTTCGGCCACAA
CCTGTATTTTGTCGGCCACAGGACCGCAACACGAGGATGGTGCGAAGGGG
AAGCTGCTCTCATACAGCCGCCGCCGCCGCCACCCAACGGAGGCTACGGC
GGAGGCGCGCTCTCTGCTTATTTTTGGCCTTTGGTCAAACTTTTCGCGTT
CACCCATCCCAGCCAGCGGAAAAGTGCGCCTGCCGTCTTCGGAAGCGACC
GTATCGTCATGGCTCGACCCACACGCAAGCCGACGCGAAGGATACCCAAA
TTTGCCGCATTTGACAGATGTCTGATTGGAAACGAAAGGTTTTTGGTGGA
G back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig528:7030..9630- >mRNA_P-wetherbeei_contig528.5.2 ID=mRNA_P-wetherbeei_contig528.5.2|Name=mRNA_P-wetherbeei_contig528.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig528:7030..9630- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCATCGCCGTGGCCGCCTTCCCGCTGCCGCCAACGGAGTCGCCCCA
TCTTCCGCACGGCGCCGTCGTTCCGCTCAAGCAGCCGTCGCAGCGGCAGC
GGCGGCGGGGCAGCATCCACGAAGATCAAGCCCTCGCCCAGCCCGGCCTC
CTCTCCCTCATCCTGTCGTTCGCCGGCAAGGGAGAGCACCTCTTCTTCTC
CGGCGTCTCACGCGGCTTTCGCGCCGCCTGGCTCGCCGGTGGCGCCGAGG
ACGACGCGGCGGGAGCAAGAGCTGCAGCGGCGGCAGCGGACGCTGGCGGC
GGGGCTGCCGGCAATGCCGGGCGGATGACGACGACGCTGGCGGCGGTCAT
CCAGTCCGTGCCGCGCGTCGAGTGGGCGCTTGGCTCGGGCCTGCCCTGGG
ACCGCGGCCTGATCCGCGCCGCGGCCATGTCTGAGGACGGCACAGCCGTA
CTCGAGTGGGCGCTCGAGTCCGGCCGGCTCCTCGTGCCTGTCCCGGGCGC
GGACGACCCCCTCGGTGCGCTCTGCGCGTGGGCGGCCGGCCGGGGGCGGC
TGGCCAACTTGCGCTGGGCACGCGAACGCGGATTTCCCTGGGGCGATTCG
CTGTGCCGCGTCGCATCGCGTGGCGGTCACCTCGACGTACTGCAGTGGGC
GCGGGCCAACGGCTGCCCCTGGGACCGCTTCGTATGCTCGTACGCGGCGA
GCGGCGGCCACCTGGCCGTGCTCAAGTGGGCGCGCGACCACGGCTGCCCC
TGGGGCGAGCAGACCTGCATCGAGGCCGCCGGCAGCGGGCACCTCGAAGT
GCTACAGTACCTCCGGGAGCACGGCTGCCCCTGGGGCAAGCAGACCTGCC
AAAACGCCGCGCTGCATGGCCACCTGGAGGTGCTGCGCTGGGCGCGCGAG
AACGGGTGCCCGTGGGACGGCTACATGTGCTTTTGCGCAGGGCAATGCGC
TGACCCCACGATTCTCGAGTGGGTGCACGCCAACGGCTGCCCCTGCGAAC
ACAACGAGCCGACCTCGTAA back to top
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