mRNA_P-wetherbeei_contig52781.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52781.1.1
Unique NamemRNA_P-wetherbeei_contig52781.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A6G0WTU8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTU8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.440e-30
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGG--------TVTPPPXXXXXXPTSTCPGTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPSXTVK 306
             CG C+NC+Y+PT AC+VGWT+AQC SVPA TWCG          ++  P         S C G+C NC+Y PTNACF GWT++QC SV+AYTWCG GG   P+   T +
Sbjct:  258 DCGSCTNCYYAPTQACYVGWTEAQCTSVPANTWCGSKGKTKEVSKSIDSPSVESAAATKSQC-GSCTNCYYAPTNACFVGWTQSQCSSVSAYTWCGSGGANPPSSPPTTQ 366          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A485KFD8_9STRA (Aste57867_3539 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFD8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.920e-30
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGTVTPPPXXXXXXPTSTCPGTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGG 273
             CG CSNC+Y+PT+ACF GWT  QC  V  YTWCG     P P      P+S   G+C NC+Y PT+ACF+GWT AQC  V  YTWCG  G
Sbjct:   23 SCGSCSNCYYAPTSACFSGWTADQCAQVAQYTWCGSNGA-PQPNNGPPPPSSGSCGSCNNCYYAPTSACFAGWTAAQCAQVPQYTWCGSNG 112          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A397F837_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F837_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.620e-26
Identity = 55/118 (46.61%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGTVTPPPXXXXXXPTSTCP----------------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGG 270
            QCG C+NC+Y  TNACF+GWTKAQCD +  Y WCG G+  P P  XXXX                                  G C NC+YP TNACF GW+KAQCDS+  Y WCG G
Sbjct:   19 QCGVCTNCYYPVTNACFLGWTKAQCDFLDVYKWCGAGSSDPQPVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCGVCTNCYYPVTNACFLGWSKAQCDSLDVYKWCGAG 136          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A6A4ZI01_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZI01_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.520e-26
Identity = 53/120 (44.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGT---VTPPPXXXXXXPTSTCP-------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
             CG C+NC+Y+PT +CF GWT AQC SV  Y WCG      +TP        P+S  P                   G+C NC+Y PT ACF+GWT  QC SV+ Y WCG GG   P PS
Sbjct:   61 DCGSCTNCYYAPTQSCFAGWTAAQCASVSDYKWCGSSAPSPITPGTSRSNPKPSSKHPKPSPSTKPSSAPQPPKGDCGSCNNCYYAPTQACFAGWTAEQCASVSDYKWCGSGG---PNPS 177          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A3L6VCU6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCU6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.390e-22
Identity = 50/128 (39.06%), Postives = 62/128 (48.44%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCG-GGTVTPPPXXXXXXPTSTCP-----------------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
            QCG C+NC+++  NACF+GW+K QCDS   Y WCG GG+    P      P++  P                             G C NC++   NACF GW+K QCDS   Y WCG GG    TPS
Sbjct:    6 QCGGCTNCYFAGNNACFIGWSKEQCDSTGWYKWCGIGGSDPSTPSSPKSAPSTNAPYPSSSTDTPVTXXXXXXXSGAPEPADPQCGGCTNCYFAGNNACFIGWSKEQCDSTGWYKWCGIGGSDPSTPS 133          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A3R7BDT8_9STRA (VWFA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BDT8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-21
Identity = 50/128 (39.06%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCG-GGTVTPPPXXXXXXPTSTCP-----------------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
            QCG C+NC+++  NACF+GW+K QCDS   Y WCG GG+    P      P++  P                             G C NC++   NACF GW+K QCDS   Y WCG GG + P PS
Sbjct:  274 QCGGCTNCYFAGNNACFIGWSKEQCDSTGWYKWCGIGGSDPSTPSSPKSAPSTNAPYPSSSTDTPVTXXXXXXXSGAPEPADPQCGGCTNCYFADRNACFIGWSKQQCDSTGWYKWCGAGG-SNPPPS 400          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A418E0Y7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E0Y7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.530e-21
Identity = 52/141 (36.88%), Postives = 61/141 (43.26%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGTVTPPPXXXXXXP----------------------------------------------TSTCP-------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCG 264
            QCG C+NC+Y+ TNACF+GW+KAQCDS+  Y WCG  +  P P    XX                                               TS  P       G C NC+Y   N CF GW+KAQCDSV  Y WCG
Sbjct:   61 QCGGCTNCYYAVTNACFLGWSKAQCDSLDTYKWCGSDSSNPSPSPSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSNPSSITDTXXXXXXXLSTSGAPQPVDPQCGACTNCYYAVNNGCFLGWSKAQCDSVDEYKWCG 201          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A425CNX7_9STRA (Chitin-binding type-4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CNX7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.570e-21
Identity = 49/128 (38.28%), Postives = 62/128 (48.44%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCG-GGTVTPPPXXXXXXPTSTCP-----------------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
            QCG C+NC+++  NACF+GW+K QCDS   Y WCG GG+    P      P++  P                             G C NC++   N CF GW+K QCDS   Y WCG GG + P PS
Sbjct:  274 QCGGCTNCYFAGNNACFIGWSKEQCDSTGWYKWCGIGGSDPSTPSSPKSAPSTNAPYPSYSTDTPVTMDTPPSTSGAPEPADPQCGGCTNCYFADRNKCFIGWSKQQCDSTGWYKWCGAGG-SNPPPS 400          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A418BW65_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BW65_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.500e-21
Identity = 52/152 (34.21%), Postives = 65/152 (42.76%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGTVTP------------------------------------------------------PPXXXXXXPTSTCPGTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
             CG+C+NC+++  NACF+GW+KAQCDSV  Y WCG G   P                                                      PP      P +   G C NC++   NACF GW+KAQCDSV  Y WCG  G + P+PS
Sbjct:  279 HCGRCTNCYFAANNACFLGWSKAQCDSVDLYKWCGDGDSDPSTPSXXXXXXSTNDSYPSSSADTPVTMXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTSGGPQPVNPQCGGCSNCYFAVNNACFLGWSKAQCDSVNEYKWCGDDG-SNPSPS 429          
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Match: A0A418FZU6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FZU6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.810e-21
Identity = 52/143 (36.36%), Postives = 67/143 (46.85%), Query Frame = 1
Query:    1 QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGG-----TVTPPPXXXXXXPTSTCP----------------------------------------GTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPS 294
             CG C+NC+++  NACF+ W+KAQCDSV  Y WCG G     T + PP      P+S+                                          G C NC++   NACF GW+KAQCDS+  Y WCG GG + P+PS
Sbjct:  294 HCGGCTNCYFAVNNACFLWWSKAQCDSVDVYKWCGAGGSDPSTPSSPPSTNAFYPSSSTDTPVTAGXXXXXXXXXXXXXXXXXXXXXXTSGGPQPVDPQCGGCTNCYFAGNNACFLGWSKAQCDSLDQYKWCGDGG-SNPSPS 435          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WTU8_9STRA1.440e-3050.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KFD8_9STRA6.920e-3054.95Aste57867_3539 protein n=1 Tax=Aphanomyces stellat... [more]
A0A397F837_9STRA6.620e-2646.61Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4ZI01_9STRA7.520e-2644.17Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6VCU6_9STRA2.390e-2239.06Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A3R7BDT8_9STRA1.530e-2139.06VWFA domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A418E0Y7_9STRA3.530e-2136.88Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A425CNX7_9STRA6.570e-2138.28Chitin-binding type-4 domain-containing protein n=... [more]
A0A418BW65_9STRA9.500e-2134.21Uncharacterized protein (Fragment) n=4 Tax=Aphanom... [more]
A0A418FZU6_9STRA9.810e-2136.36Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52781contigP-wetherbeei_contig52781:153..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008868348.1
PFAMsGlyco_hydro_18
Model size390
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.95e-12
EggNOG OGsCOG3469@1|root,2S0WK@2759|Eukaryota
DescriptionGlycosyl hydrolases family 18
Cds size390
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.1595752-CDS-P-wetherbeei_contig52781:152..5421683186791.1595752-CDS-P-wetherbeei_contig52781:152..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52781 153..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52781.1.1prot_P-wetherbeei_contig52781.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52781 153..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52781.1.1

>prot_P-wetherbeei_contig52781.1.1 ID=prot_P-wetherbeei_contig52781.1.1|Name=mRNA_P-wetherbeei_contig52781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
QCGQCSNCFYSPTNACFVGWTKAQCDSVPAYTWCGGGTVTPPPAPTPTPP
TSTCPGTCGNCFYPPTNACFSGWTKAQCDSVAAYTWCGGGGGALPTPSPT
VKPPTTTTTPAPTKKPTPKPTTVGTATPKP
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mRNA from alignment at P-wetherbeei_contig52781:153..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52781.1.1 ID=mRNA_P-wetherbeei_contig52781.1.1|Name=mRNA_P-wetherbeei_contig52781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig52781:153..542+ (Phaeothamnion wetherbeei SAG_119_79)
CAATGTGGACAGTGCAGCAATTGTTTTTATTCCCCCACGAACGCCTGCTT CGTTGGCTGGACGAAGGCGCAGTGCGACTCTGTTCCTGCGTACACGTGGT GCGGTGGTGGGACAGTAACGCCGCCCCCGGCGCCGACCCCGACACCACCA ACTTCTACATGCCCGGGAACATGCGGCAACTGTTTTTACCCTCCGACGAA TGCCTGCTTCTCGGGCTGGACGAAAGCGCAGTGCGACTCTGTTGCCGCGT ACACGTGGTGCGGCGGAGGCGGCGGGGCCCTTCCAACGCCGTCGCCGACG GTTAAGCCTCCCACCACGACCACGACGCCGGCACCTACGAAGAAGCCAAC ACCCAAGCCGACGACTGTCGGCACGGCAACCCCGAAACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52781:153..542+

>mRNA_P-wetherbeei_contig52781.1.1 ID=mRNA_P-wetherbeei_contig52781.1.1|Name=mRNA_P-wetherbeei_contig52781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig52781:153..542+ (Phaeothamnion wetherbeei SAG_119_79)
CAATGTGGACAGTGCAGCAATTGTTTTTATTCCCCCACGAACGCCTGCTT
CGTTGGCTGGACGAAGGCGCAGTGCGACTCTGTTCCTGCGTACACGTGGT
GCGGTGGTGGGACAGTAACGCCGCCCCCGGCGCCGACCCCGACACCACCA
ACTTCTACATGCCCGGGAACATGCGGCAACTGTTTTTACCCTCCGACGAA
TGCCTGCTTCTCGGGCTGGACGAAAGCGCAGTGCGACTCTGTTGCCGCGT
ACACGTGGTGCGGCGGAGGCGGCGGGGCCCTTCCAACGCCGTCGCCGACG
GTTAAGCCTCCCACCACGACCACGACGCCGGCACCTACGAAGAAGCCAAC
ACCCAAGCCGACGACTGTCGGCACGGCAACCCCGAAACCG
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