mRNA_P-wetherbeei_contig52764.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52764.1.1
Unique NamemRNA_P-wetherbeei_contig52764.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A7J9WA36_9ACTN (Uncharacterized protein n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WA36_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 6.370e-13
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   46 RRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARS--AGLAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNWL 336
            R P +D+VI+LL + LF WA   + +W+FR+ALFP++V  AG L+ LL L++L+     + +  A         V  D+EAE Q LEY FA+  RR WL
Sbjct:    9 RLPLSDIVISLLFVALFAWAYLEAGQWTFRSALFPKLVTAAGALIALLRLAMLLXXXXXSTVDDAARPQIDGVTVVDDEEAEEQSLEYVFANAGRRVWL 107          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A4Y9PTL4_9ACTN (Uncharacterized protein n=1 Tax=Blastococcus sp. CT_GayMR20 TaxID=2559609 RepID=A0A4Y9PTL4_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 4.560e-12
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   16 MSDTAQQKLPRRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAGLAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNWLVN 342
            M   + Q     P ADLVIT  L+ LF WAL +S+EWS RAALFPR+V   GL + LL+L LL+ R      A++      +   +D+     L+Y F+   RR W V+
Sbjct:    1 MKPESSQSARAWPVADLVITAALIALFTWALSSSMEWSVRAALFPRLVTTFGLAIALLHLVLLLVRRRSGTSADAGHGLVPISDPEDDP----LDYAFSTAGRRAWTVS 105          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A846LM07_9ACTN (Uncharacterized protein n=1 Tax=Modestobacter marinus TaxID=477641 RepID=A0A846LM07_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 9.140e-10
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   52 PSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLS---LLVARSAGLAPAESXXXXXAVVAG----DDEA-EAQELEYEFAHTSRRNWLV 339
            P AD+VIT++LL +FGWA   + +WSFRAALFPR+V  AG++  ++ L    L++ R    A         +V AG    D+EA EA ++EY FA    R+W +
Sbjct:   35 PIADVVITVVLLAVFGWAFLDAADWSFRAALFPRIVTGAGVVFCVVKLVQDLLVLRRGRASAAGPPVPAHESVPAGGTHEDEEAIEADDVEYVFATAGARSWSL 138          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A543FTC8_9PSEU (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Pseudonocardia cypriaca TaxID=882449 RepID=A0A543FTC8_9PSEU)

HSP 1 Score: 61.6 bits (148), Expect = 2.160e-9
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   46 RRPS----ADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAGLAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNW 333
            RRPS     D+V+T+LLLVLF WA   + EWSFRAALFPR+V  AG++L  L+L   V R     P+          AGD  A++ ++EY F     R W
Sbjct:   15 RRPSPEAVVDVVVTVLLLVLFAWAFIEAGEWSFRAALFPRLVTGAGVVLTALHLVQAVLRLRRPTPSPE--------AGD--ADSDDVEYVFRTAGARRW 104          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A286GGV9_9ACTN (Tripartite tricarboxylate transporter TctB family protein n=2 Tax=Blastococcus sp. DSM 44270 TaxID=1938745 RepID=A0A286GGV9_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 2.890e-7
Identity = 46/129 (35.66%), Postives = 59/129 (45.74%), Query Frame = 1
Query:   16 MSDTAQQKLPRRPS----ADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAG-------------------LAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNW 333
            M+D A Q   RR S    AD+V+ LLLL LFGWA   + +WSF+AA+FPR+V   G  +  L +   + R AG                     PAES        A DD A   ++EY F     R W
Sbjct:   20 MADPAPQAPSRRSSTGAVADVVLGLLLLALFGWAFLEAADWSFKAAIFPRIVTGLGFSVAFLQVVQSLLRLAGGRRAAGARTPVTSPAGPIEPVPAESVPQAAGTTAEDD-ANEDDVEYVFQTAGARRW 147          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A838SS91_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838SS91_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 3.790e-7
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   25 TAQQKLPRRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAGLAPAES 240
            TA    PRR  A LVI   L+++FGW L  +  WS RAAL+PR+V+ AGL+L L+ L  +V   A  APA++
Sbjct:    2 TAAAPPPRRDIAGLVICAALILVFGWGLAEATGWSLRAALYPRLVSTAGLVLTLVQL--VVGLRARRAPAQA 71          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A1Q9RUW0_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia sp. CNS-004 TaxID=1904967 RepID=A0A1Q9RUW0_9PSEU)

HSP 1 Score: 56.2 bits (134), Expect = 7.000e-7
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   46 RRPS----ADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAGLAPAESXXXXXAVVAGDDEAEAQ--ELEYEFAHTSRRNWLV 339
            RRPS    AD+V + LLL LF WA   + EWS+RAALFPR+V  AG++L  L+L+ ++ R     P  +          DDE +    ++EY F     R W  
Sbjct:  166 RRPSPEAVADVVASALLLALFAWAFVAAGEWSYRAALFPRLVTAAGIVLTALHLAQVLLRIRRQVPPGA----------DDEPDGDPHDVEYVFRTAGPRRWAA 259          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A3D0QXL8_STRSQ (Uncharacterized protein n=1 Tax=Streptomyces sp. TaxID=1931 RepID=A0A3D0QXL8_STRSQ)

HSP 1 Score: 53.5 bits (127), Expect = 4.440e-6
Identity = 38/104 (36.54%), Postives = 53/104 (50.96%), Query Frame = 1
Query:   34 QKLPRRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNL--SLLVARSAGLAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNWLV 339
            +++P    AD+V+T LLL LF WA   +  WSFRA+LFPR+VA +   L  L+L  SLL  R     P             +D+A   ++EY FA     +W  
Sbjct:   69 RQVPADRVADVVLTSLLLALFAWAYLEAGHWSFRASLFPRLVAGSAFALAALHLVQSLLELRKGSADPTGPG--------AEDDAGRDDVEYVFATAGAESWAA 164          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: UPI001F5AD2A8 (tripartite tricarboxylate transporter TctB family protein n=1 Tax=Saccharopolyspora sp. K220 TaxID=2926618 RepID=UPI001F5AD2A8)

HSP 1 Score: 52.8 bits (125), Expect = 4.560e-6
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   61 DLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNLSLLVARSAGLAPAESXXXXXAVVAGDDEAEAQELEYEFAHTSRRNWLV 339
            DLVIT +L++LFG AL  +  W FR ALFP +V+ A LLL L +L+ L+ R     PAE      A   GD       ++Y FA   RR W  
Sbjct:   18 DLVITAVLVLLFGAALLATTAWPFRTALFPTIVSGAALLLSLAHLATLLLRRRRAEPAEQQRE--AAADGD-------VDYVFATAGRRAWTA 101          
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Match: A0A561T4V7_9PSEU (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Pseudonocardia hierapolitana TaxID=1128676 RepID=A0A561T4V7_9PSEU)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   28 AQQKLPRRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAVAGLLLVLLNL 195
            A ++ P    AD+V+T+LLL LFGW    + +WSF+AALFPR+V  +  +L  L+L
Sbjct:   17 APRRAPSGAVADVVLTVLLLALFGWGFLEAAQWSFQAALFPRIVTGSAFVLAALHL 72          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52764.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7J9WA36_9ACTN6.370e-1342.42Uncharacterized protein n=1 Tax=Nitriliruptorales ... [more]
A0A4Y9PTL4_9ACTN4.560e-1240.37Uncharacterized protein n=1 Tax=Blastococcus sp. C... [more]
A0A846LM07_9ACTN9.140e-1041.35Uncharacterized protein n=1 Tax=Modestobacter mari... [more]
A0A543FTC8_9PSEU2.160e-944.00Tripartite tricarboxylate transporter TctB family ... [more]
A0A286GGV9_9ACTN2.890e-735.66Tripartite tricarboxylate transporter TctB family ... [more]
A0A838SS91_9ACTN3.790e-747.22Uncharacterized protein (Fragment) n=1 Tax=Euzebya... [more]
A0A1Q9RUW0_9PSEU7.000e-738.46Uncharacterized protein n=1 Tax=Pseudonocardia sp.... [more]
A0A3D0QXL8_STRSQ4.440e-636.54Uncharacterized protein n=1 Tax=Streptomyces sp. T... [more]
UPI001F5AD2A84.560e-641.94tripartite tricarboxylate transporter TctB family ... [more]
A0A561T4V7_9PSEU1.580e-546.43Tripartite tricarboxylate transporter TctB family ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52764contigP-wetherbeei_contig52764:202..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size342
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.8550534-UTR-P-wetherbeei_contig52764:201..2161683186790.8550534-UTR-P-wetherbeei_contig52764:201..216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52764 202..216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.8634899-CDS-P-wetherbeei_contig52764:216..5431683186790.8634899-CDS-P-wetherbeei_contig52764:216..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52764 217..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52764.1.1prot_P-wetherbeei_contig52764.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52764 217..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52764.1.1

>prot_P-wetherbeei_contig52764.1.1 ID=prot_P-wetherbeei_contig52764.1.1|Name=mRNA_P-wetherbeei_contig52764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MSDTAQQKLPRRPSADLVITLLLLVLFGWALWTSLEWSFRAALFPRMVAV
AGLLLVLLNLSLLVARSAGLAPAESESPGPAVVAGDDEAEAQELEYEFAH
TSRRNWLVN
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mRNA from alignment at P-wetherbeei_contig52764:202..543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52764.1.1 ID=mRNA_P-wetherbeei_contig52764.1.1|Name=mRNA_P-wetherbeei_contig52764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig52764:202..543+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGGGGACCCGAGCATGAGTGACACGGCCCAGCAGAAACTGCCCCGTCG GCCGTCCGCTGACCTCGTCATCACACTTCTGTTGCTTGTCCTGTTCGGCT GGGCCCTGTGGACGTCGCTGGAATGGTCCTTCCGCGCTGCCCTGTTCCCG CGGATGGTGGCAGTGGCGGGCTTGCTCCTGGTCCTGCTGAACCTGAGCCT GCTGGTCGCTCGCAGCGCGGGTCTGGCGCCAGCCGAGTCGGAGTCACCCG GGCCGGCGGTTGTGGCGGGCGACGACGAGGCCGAGGCTCAGGAGCTCGAG TACGAGTTCGCGCACACGAGCCGCCGCAACTGGCTGGTCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52764:202..543+

>mRNA_P-wetherbeei_contig52764.1.1 ID=mRNA_P-wetherbeei_contig52764.1.1|Name=mRNA_P-wetherbeei_contig52764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig52764:202..543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGACACGGCCCAGCAGAAACTGCCCCGTCGGCCGTCCGCTGACCT
CGTCATCACACTTCTGTTGCTTGTCCTGTTCGGCTGGGCCCTGTGGACGT
CGCTGGAATGGTCCTTCCGCGCTGCCCTGTTCCCGCGGATGGTGGCAGTG
GCGGGCTTGCTCCTGGTCCTGCTGAACCTGAGCCTGCTGGTCGCTCGCAG
CGCGGGTCTGGCGCCAGCCGAGTCGGAGTCACCCGGGCCGGCGGTTGTGG
CGGGCGACGACGAGGCCGAGGCTCAGGAGCTCGAGTACGAGTTCGCGCAC
ACGAGCCGCCGCAACTGGCTGGTCAAC
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