mRNA_P-wetherbeei_contig5274.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5274.1.1
Unique NamemRNA_P-wetherbeei_contig5274.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5274.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5274contigP-wetherbeei_contig5274:1546..2914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size997
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.3893847-UTR-P-wetherbeei_contig5274:1545..18211683186790.3893847-UTR-P-wetherbeei_contig5274:1545..1821Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5274 1546..1821 -
1683186790.428488-UTR-P-wetherbeei_contig5274:2706..29141683186790.428488-UTR-P-wetherbeei_contig5274:2706..2914Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5274 2707..2914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.4006908-CDS-P-wetherbeei_contig5274:1821..21631683186790.4006908-CDS-P-wetherbeei_contig5274:1821..2163Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5274 1822..2163 -
1683186790.412671-CDS-P-wetherbeei_contig5274:2535..27061683186790.412671-CDS-P-wetherbeei_contig5274:2535..2706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5274 2536..2706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5274.1.1prot_P-wetherbeei_contig5274.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5274 1822..2706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5274.1.1

>prot_P-wetherbeei_contig5274.1.1 ID=prot_P-wetherbeei_contig5274.1.1|Name=mRNA_P-wetherbeei_contig5274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MEAPVGAAVPLLPEPERAMLVAGRVLDRLLFVWARPDNPRLLHIDQSQIQ
TVVPLIQHVCFNSLEVTRSVLRRCATALPQLESARMWPFVKLLFSMVEVT
DRHQQERVAMAMETLVHIVGQIVRNSFHHAQEVSCRRRGKTIGTDRVSKT
RESEKRKEQGKKEGANGASF*
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mRNA from alignment at P-wetherbeei_contig5274:1546..2914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5274.1.1 ID=mRNA_P-wetherbeei_contig5274.1.1|Name=mRNA_P-wetherbeei_contig5274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1369bp|location=Sequence derived from alignment at P-wetherbeei_contig5274:1546..2914- (Phaeothamnion wetherbeei SAG_119_79)
GGAGCCCGCCCTCGGGCGGGACCTCTGCGACAGGGCCGTCGAAGACGCTG
ACGCCGCCGCTGCCGCTTCCGATGCCGACATCGATGCCAATGCCGCTGGT
GCAGCCGGCGCAGCTGCAGCCGTTGCGGACGGCGTGCCGGTCCGGCGCGA
GGTGGCGCCGCAGCTCTTGTTCCCGTCCGCCGTCGCGCCGACGCTGCTGC
CGGCCGCCATGGAGGCACCGGTGGGGGCGGCGGTGCCGCTGCTGCCGGAG
CCGGAGCGGGCAATGCTGGTCGCTGGGCGGGTGCTGGACCGGCTGTTGTT
CGTGTGGGCGCGGCCGGACAACCCGCGGCTGCTGCACATCGACCAGTCGC
AGATACAGACGGTCGTCCCCCTGATCCAGGTGAATGCGACGGACAAGTTG
GGAAGTGACGTTTTTGTCCACGACAGACACGTTTGGGTCCAGTTTGGGGA
TAAATTCGAGGCGGCCTGGCCTGCCGCGTGCTTCGGGCTGCTGTGTGGCC
GTCGGGGTTTTTTCCCGGAGGAAGCTTTCGCGCAGCCTCGGTTGCATGTT
GGCTGTGCGCTGCTGCCGCAGTACTGGCCACGTGTCGGTCCTCCCAAACG
CGATGCCCGTTTCCCCCATTTTCCCGTCTTCGGTCCGCTCCCTCGCTCGT
TCGCCCTCACTCGCGCTCCCACTTATTCTTTAACCGAACGACCGAAATCC
GGGGATGGAGCCAAACTGGAACCGGAACGGAACCGCACTGGAACCACGTA
GCACGTGTGCTTCAACAGCTTGGAGGTGACCCGGAGCGTGCTGCGGCGCT
GCGCGACGGCGCTGCCCCAGCTCGAATCGGCGCGCATGTGGCCGTTCGTC
AAGCTCCTGTTCTCGATGGTAGAGGTGACGGACCGGCACCAGCAAGAACG
CGTCGCCATGGCGATGGAGACGCTGGTGCACATCGTGGGGCAGATCGTGC
GCAACAGCTTCCACCACGCCCAGGAGGTTAGTTGTCGTCGACGGGGCAAA
ACGATCGGTACTGATCGGGTGAGCAAAACAAGAGAAAGTGAGAAGAGAAA
GGAGCAAGGAAAGAAAGAAGGAGCGAATGGGGCCAGTTTTTGAAGTATAA
CGAGGGAGAGAAGACACGACGTGGGCGGTGGGGAAGAGGGAGAGCGGGAG
GATGGAGCAGTGTGGCGGGGCGGCGGCTGCCGTCGGCGGATTTTATCCAC
TGTGCTGCAGTCTTTCCAGCCCCCGCCGCGCCGCAGTCCGTCTCTTTACA
AAATCGGGCCCGAGGGGGGCGACACCGAACCGAGATCCGAACTGCCGATT
CTAAACCGGATCGACTGATCTATATACTCTGTCCCTGGTGTCACCACCTC
TGAAACACCCAAACCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5274:1546..2914-

>mRNA_P-wetherbeei_contig5274.1.1 ID=mRNA_P-wetherbeei_contig5274.1.1|Name=mRNA_P-wetherbeei_contig5274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig5274:1546..2914- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCACCGGTGGGGGCGGCGGTGCCGCTGCTGCCGGAGCCGGAGCG
GGCAATGCTGGTCGCTGGGCGGGTGCTGGACCGGCTGTTGTTCGTGTGGG
CGCGGCCGGACAACCCGCGGCTGCTGCACATCGACCAGTCGCAGATACAG
ACGGTCGTCCCCCTGATCCAGCACGTGTGCTTCAACAGCTTGGAGGTGAC
CCGGAGCGTGCTGCGGCGCTGCGCGACGGCGCTGCCCCAGCTCGAATCGG
CGCGCATGTGGCCGTTCGTCAAGCTCCTGTTCTCGATGGTAGAGGTGACG
GACCGGCACCAGCAAGAACGCGTCGCCATGGCGATGGAGACGCTGGTGCA
CATCGTGGGGCAGATCGTGCGCAACAGCTTCCACCACGCCCAGGAGGTTA
GTTGTCGTCGACGGGGCAAAACGATCGGTACTGATCGGGTGAGCAAAACA
AGAGAAAGTGAGAAGAGAAAGGAGCAAGGAAAGAAAGAAGGAGCGAATGG
GGCCAGTTTTTGA
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