mRNA_P-wetherbeei_contig5272.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: D7FZL0_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL0_ECTSI) HSP 1 Score: 135 bits (341), Expect = 9.800e-36 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSR--EVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKV 336
QLGYRMGMAA+L W++WDC E G +VS++ PAF YRA+ G+LLL WCWG+S L VW R RINY+YLFD+D R + SPL+VFN+ + ET+V+ ANLLLYYKV
Sbjct: 267 QLGYRMGMAAVLAFWILWDCCLEPEGDDPGWQVSVLLHPAFPVYRALAGILLLRWCWGLSSL-----VWGRARINYIYLFDMDPRAVSSPLQVFNNVAAETVVYLANLLLYYKV 375
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A835YP28_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP28_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.630e-35 Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
QLGY +G+AA+L W+VWDC EV +VS++GQPAFR +RAV GLLLLHW W S+L WTRTRIN+LYLF+LD R+ PL +FN + ET+VF A LL YYK ++
Sbjct: 418 QLGYHLGIAAILAFWVVWDCCVEVAKKGEDVSVMGQPAFRVFRAVAGLLLLHWAWAFSVL-----YWTRTRINFLYLFELDPRHQSPPLALFNDVAGETVVFLACLLAYYKAQV 526
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A835ZE89_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE89_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.130e-33 Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRS-----------------------------------PLEVFNSASVETIVFFANLLLYYKVKM 342
QLGY +G+AA+L W+VWDC EV+ +VS++GQPAFR YR V GLLLLHW WG S+L VWTRTRIN++YLF+LD R+ + P+ +FN A++ET+VF ANLL YYK +M
Sbjct: 386 QLGYHLGIAAVLAFWVVWDCCVEVFKRGEDVSVMGQPAFRVYRGVAGLLLLHWAWGFSVL-----VWTRTRINFIYLFELDPRHQMTWCIXXXXXXXXXXXXQPKXXXXXXXXXXXXXXXAPPISIFNDAALETVVFLANLLAYYKAQM 529
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S1UZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZJ6_9STRA) HSP 1 Score: 114 bits (285), Expect = 8.530e-29 Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 LGYRMGMAALLVMWLVWDCIEEVWGSSRE--VSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
+GYR+GM A+L +W+ WDCI WG R +I G+ AF +R GGLLLLHW WG S+ VW R RINY++LFDLD R + SP+ +FN ET+VF +LLYYK
Sbjct: 1 MGYRLGMCAILTLWVAWDCI---WGYVRNGNSTIGGRTAFPVFRGCGGLLLLHWFWGASVY-----VWNRFRINYIFLFDLDPRTVDSPITIFNDVVDETLVFMFLMLLYYK 104
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S4MNN5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNN5_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.290e-28 Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
+LGYRMGM ++L +W+ WDCI WG + +I G+ AF +RA GGLLLLHW WG S+ VWTR RINY++LFD + R + +P+ +FN ET+VFF +LLYYK
Sbjct: 421 RLGYRMGMCSILALWVCWDCI---WGLVADGNTTIGGRSAFPVFRACGGLLLLHWFWGTSVY-----VWTRYRINYIFLFDFNPRIVDTPMNIFNETVDETLVFFICMLLYYK 525
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: B8LC07_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC07_THAPS) HSP 1 Score: 115 bits (288), Expect = 7.720e-28 Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
+LGYR+GM ++L +W+ WDC VWG S +VSI G+ AF +R GLL HW WG+S+ VW+R RINY+YLF+ D RN+ +P+++FN A ET VF ++L+YYK
Sbjct: 390 RLGYRLGMCSILALWVAWDC---VWGQFSKGQVSIGGRSAFPVFRGCFGLLAWHWFWGMSVY-----VWSRYRINYIYLFEFDPRNVDTPIDIFNDAVDETFVFLVSMLMYYK 494
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A1E7FGD3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGD3_9STRA) HSP 1 Score: 106 bits (265), Expect = 4.570e-27 Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
QLGYR+GM A+L +W+ WDCI WG + + +I +PAF +RA GGLLLL W WG S+ +W R R+NY++LFD + R + +P+ + A T+++ + +LLYYKV+M
Sbjct: 51 QLGYRLGMCAILALWVAWDCI---WGLIAKGKSTIGSRPAFAVFRACGGLLLLQWFWGFSVF-----MWNRYRVNYIFLFDFNPRIVSTPVGIVKDAVDNTLLYMSLMLLYYKVRM 158
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A1E7FCH7_9STRA (EXS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCH7_9STRA) HSP 1 Score: 105 bits (261), Expect = 5.380e-27 Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSRE-VSIVGQ-PAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
QLGYRMG+ A+L +W+ WDC VWG + S +G+ AF +RA GGLLLL W WG S+ VWTR RINY++LFD + +P ++F +A T++F +LLYYKV+M
Sbjct: 7 QLGYRMGVCAVLAVWVCWDC---VWGLVKNGYSTIGERAAFPIFRACGGLLLLQWYWGCSVF-----VWTRYRINYIFLFDFVPSTISTPFDIFCAAVDNTLLFMILMLLYYKVRM 114
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S4RIS9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RIS9_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.120e-26 Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSRE--VSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVK 339
+LGYR+GM +L +W+ WDCI WG ++ +I G+PAF +RA GLLL+HW WG+S+ VWTR RINY+YLFD + R + +P+ ++N ET+VF +LLYYKV+
Sbjct: 436 RLGYRLGMCFILSLWVCWDCI---WGLVKDGNSTIGGRPAFPVFRAGAGLLLVHWFWGLSVF-----VWTRHRINYIYLFDFNPRIVDTPITIYNDCVDETLVFLILMLLYYKVR 542
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: W7TDD1_9STRA (Xenotropic and polytropic murine leukemia virus receptor xpr1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDD1_9STRA) HSP 1 Score: 107 bits (268), Expect = 6.710e-25 Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKV 336
QLGY++G+AA L +W+VWDC+ +V + +IV + AF +RAVGGLLLLHWCWG+ I C + RIN++YL DL +N+ SP ++F+ A E+IV+ +LLYYKV
Sbjct: 341 QLGYKLGVAATLALWVVWDCVVQV-AKFGKPTIVTKMAFPVFRAVGGLLLLHWCWGI-IEHFCNYL----RINFVYLLDLSPKNVSSPRKIFDEAVNESIVYLTCMLLYYKV 446 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5272.2.1 >prot_P-wetherbeei_contig5272.2.1 ID=prot_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp MGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWback to top mRNA from alignment at P-wetherbeei_contig5272:2822..3355- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5272.2.1 ID=mRNA_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2822..3355- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5272:2822..3355- >mRNA_P-wetherbeei_contig5272.2.1 ID=mRNA_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2822..3355- (Phaeothamnion wetherbeei SAG_119_79)back to top |