mRNA_P-wetherbeei_contig5272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5272.1.1
Unique NamemRNA_P-wetherbeei_contig5272.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5272contigP-wetherbeei_contig5272:2119..2670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size553
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.1129634-CDS-P-wetherbeei_contig5272:2118..24211683186790.1129634-CDS-P-wetherbeei_contig5272:2118..2421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5272 2119..2421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.1249204-UTR-P-wetherbeei_contig5272:2421..26701683186790.1249204-UTR-P-wetherbeei_contig5272:2421..2670Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5272 2422..2670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5272.1.1prot_P-wetherbeei_contig5272.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5272 2119..2421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5272.1.1

>prot_P-wetherbeei_contig5272.1.1 ID=prot_P-wetherbeei_contig5272.1.1|Name=mRNA_P-wetherbeei_contig5272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MKGAALPGGSKCKECPPLGVFRSDDGMPVVVSCIYIRRHGIVPLEPQSLV
SSALADSVGVGRRVKAGAGESKPCVWFIVTRFMAVYLLFCGGGGLVSQGR
T
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mRNA from alignment at P-wetherbeei_contig5272:2119..2670-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5272.1.1 ID=mRNA_P-wetherbeei_contig5272.1.1|Name=mRNA_P-wetherbeei_contig5272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2119..2670- (Phaeothamnion wetherbeei SAG_119_79)
TTTCGTTCTTTCTTTCTATCTATCTATGGTTTTTTTGGTAGTGTGATGTT
TGGCTTGGCATTGGACTTCGATTCCTATTCGGTTCTGATTTATTCGATTC
CATTCGGTCCGTTCGACTGCAAGATCTGGTCAGCTATCTGAGACTACGGT
TGCGGAGTTTGAGCTCTCCCGCCCCTGACGTCCGAGCCATGCCCCCGCTG
CTGAAGGATAGGGCAGCAGCGGCGGCTGCTGCAGCGGCGGCCGGTACTGA
TGAAGGGGGCAGCACTTCCGGGCGGATCCAAATGCAAAGAGTGCCCGCCT
TTGGGGGTTTTCCGTTCAGATGACGGGATGCCCGTGGTAGTTTCGTGCAT
CTATATTCGCCGGCACGGCATTGTGCCCCTCGAGCCGCAAAGCCTAGTGT
CATCTGCTCTAGCCGACAGTGTGGGCGTTGGACGAAGAGTTAAGGCGGGT
GCCGGGGAATCAAAACCCTGCGTTTGGTTCATTGTGACTCGTTTCATGGC
GGTGTATCTGCTGTTTTGTGGGGGGGGGGGGCTAGTTTCGCAGGGGCGGA
CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5272:2119..2670-

>mRNA_P-wetherbeei_contig5272.1.1 ID=mRNA_P-wetherbeei_contig5272.1.1|Name=mRNA_P-wetherbeei_contig5272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2119..2670- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGGGCAGCACTTCCGGGCGGATCCAAATGCAAAGAGTGCCCGCC
TTTGGGGGTTTTCCGTTCAGATGACGGGATGCCCGTGGTAGTTTCGTGCA
TCTATATTCGCCGGCACGGCATTGTGCCCCTCGAGCCGCAAAGCCTAGTG
TCATCTGCTCTAGCCGACAGTGTGGGCGTTGGACGAAGAGTTAAGGCGGG
TGCCGGGGAATCAAAACCCTGCGTTTGGTTCATTGTGACTCGTTTCATGG
CGGTGTATCTGCTGTTTTGTGGGGGGGGGGGGCTAGTTTCGCAGGGGCGG
ACG
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