mRNA_P-wetherbeei_contig527.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig527.3.1
Unique NamemRNA_P-wetherbeei_contig527.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig527.3.1 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 6.580e-10
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  481 DFWKEFDAWADRQYVGNRAAATKLKVAFRKEHRMFVASLCLEDLEEICASM 633
            +F KEFDAW D +Y G+R  +TK+KVAFRK+HR  V+ L LED+EEI  +M
Sbjct:  101 EFLKEFDAWVDGKYPGDRGRSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAM 151
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BLAST of mRNA_P-wetherbeei_contig527.3.1 vs. uniprot
Match: A0A836CKU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-8
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  481 DFWKEFDAWADRQYVGNRAAATKLKVAFRKEHRMFVASLCLEDLEEICASMAQ 639
            DF K FDAW D Q+  +RA ATK+KVAFR+EH+  VASL LE+ EEI  ++AQ
Sbjct:  103 DFLKVFDAWVDSQWP-DRATATKVKVAFRREHKRLVASLNLEETEEIAEALAQ 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig527.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID4_ECTSI6.580e-1058.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKU6_9STRA1.180e-860.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig527contigP-wetherbeei_contig527:1679..3208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size968
Hectar predicted targeting categoryother localisation
Exons3
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.5467122-UTR-P-wetherbeei_contig527:1678..17641683186789.5467122-UTR-P-wetherbeei_contig527:1678..1764Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 1679..1764 -
1683186789.5651643-UTR-P-wetherbeei_contig527:2012..22521683186789.5651643-UTR-P-wetherbeei_contig527:2012..2252Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 2013..2252 -
1683186789.5871463-UTR-P-wetherbeei_contig527:2792..28091683186789.5871463-UTR-P-wetherbeei_contig527:2792..2809Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 2793..2809 -
1683186789.5994473-UTR-P-wetherbeei_contig527:3123..32081683186789.5994473-UTR-P-wetherbeei_contig527:3123..3208Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 3124..3208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.5764744-CDS-P-wetherbeei_contig527:2252..27921683186789.5764744-CDS-P-wetherbeei_contig527:2252..2792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig527 2253..2792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig527.3.1prot_P-wetherbeei_contig527.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig527 2253..2792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig527.3.1

>prot_P-wetherbeei_contig527.3.1 ID=prot_P-wetherbeei_contig527.3.1|Name=mRNA_P-wetherbeei_contig527.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MDRRGFEQFLQKFPKVRDRDFYDVPLKNCAARPAIAAAGWSATVPAAGRR
RPIAKEERAAAYQERSAAAALAPPAANDAGAGGRTDAAASAMAATLPASA
ESRKAVADGPATADSVARFAAVPLEGDFWKEFDAWADRQYVGNRAAATKL
KVAFRKEHRMFVASLCLEDLEEICASMAQ*
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mRNA from alignment at P-wetherbeei_contig527:1679..3208-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig527.3.1 ID=mRNA_P-wetherbeei_contig527.3.1|Name=mRNA_P-wetherbeei_contig527.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig527:1679..3208- (Phaeothamnion wetherbeei SAG_119_79)
CGGCACCTTTTTTGCAATCGCAAGCTGCGCCCAACGCTAGCTGTACAGGG
CGCCCACTTTCGTCCGAGCATTTTGCGGGCAAACGGTAAGTCACACTCTT
GCTCCTCTCTATTTTCCGGGGCTCCTTTTTGTGAAACATTCGACGTGAGC
TCACAGCATCTACTTACAACCTCATGTTTGCATTGCTTCGTGATCGTGCG
CCGCTTTGGAAACTAGAACTGCCTTGACAATCCTCCCCTTTCCTCCCTTT
CTCACGAAGCTATGGTTTAACAACTTCCACGTCTGAGCTGCTTGGTCGCA
CCTCCGTCTCTCCAACCTTGCTCACGCCTTGGTCTTACCAGCTTGGGAAC
TCGCTAAGGCTCAATTAGCTGCCCTTCGCATCCACCTCTCCCCCCAAAGG
AAAAGCGGCAGCAAGCATGGACCGGCGGGGTTTCGAGCAGTTCCTGCAAA
AGTTTCCGAAAGTGCGGGATCGAGACTTTTACGACGTTCCGTTGAAGAAC
TGTGCCGCCAGGCCGGCCATTGCCGCCGCTGGCTGGAGCGCAACGGTGCC
GGCAGCCGGCAGGCGCCGGCCCATCGCCAAGGAAGAGCGTGCTGCGGCGT
ACCAGGAGCGCTCCGCCGCAGCCGCGCTCGCCCCGCCTGCGGCAAACGAC
GCCGGCGCCGGCGGCAGGACCGACGCCGCTGCATCGGCGATGGCGGCGAC
ACTGCCGGCTTCCGCGGAATCCAGAAAAGCTGTTGCTGACGGCCCCGCCA
CCGCCGACTCCGTCGCCCGGTTCGCCGCCGTGCCGTTGGAAGGCGATTTC
TGGAAGGAATTCGACGCGTGGGCGGACCGGCAGTACGTGGGGAATCGGGC
GGCGGCGACGAAGTTGAAGGTAGCGTTCCGAAAAGAGCACCGCATGTTCG
TCGCGTCGCTCTGCCTGGAGGACTTGGAGGAGATTTGCGCCAGCATGGCA
CAGTGAAGCGGCGGCGGCTGGCGGTGGCAGCGGCAACGGTAGTGGCGGTT
CGTAGAGGTAAACGGTGAAGTGGAAAAACGGCGTCGCATCACTGCGGGCA
CTGCCGAAATCTTGGCGTCTACTACAGAGAACCAGACTTCCAGTGCAGGA
GGAGACACTTTCTCTTGCCAAGTGAGCGAGTGCGTGATCTCCGCACCTTT
TGGCGGTGGCGAGAGCTCAAAATCCACCAATTCACTCCTTTCAAAGGTAC
CTGGTATTTTCTGGAAAGATTCGCGCTTGTGAGCATCCTTTGTCTCTTCG
AGCACTCACATTCATTGCGCTCCTTCGCTGCCCTTGCGCTTTCTGGTTGT
GTATGCTCTACAATCCCAATGGAGCACTGTGCCACGCCGCGAAAGAGAAG
ATGCATGGAGACATCACACGGTGTGAAGTCATCTTTAGCGCGTCTAATAA
GGTCACGTCATCTCTCTCTTCCCTGGCCCCTCTTTCCCCAGCAGCGCGTC
TATGCCAAAAGGGTAACCGTTCCTCTGACGAAGTCCGAGCCGTTCCGAAT
CGCTCGGCGCTACCGCAAGCACGACGCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig527:1679..3208-

>mRNA_P-wetherbeei_contig527.3.1 ID=mRNA_P-wetherbeei_contig527.3.1|Name=mRNA_P-wetherbeei_contig527.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig527:1679..3208- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGGCGGGGTTTCGAGCAGTTCCTGCAAAAGTTTCCGAAAGTGCG
GGATCGAGACTTTTACGACGTTCCGTTGAAGAACTGTGCCGCCAGGCCGG
CCATTGCCGCCGCTGGCTGGAGCGCAACGGTGCCGGCAGCCGGCAGGCGC
CGGCCCATCGCCAAGGAAGAGCGTGCTGCGGCGTACCAGGAGCGCTCCGC
CGCAGCCGCGCTCGCCCCGCCTGCGGCAAACGACGCCGGCGCCGGCGGCA
GGACCGACGCCGCTGCATCGGCGATGGCGGCGACACTGCCGGCTTCCGCG
GAATCCAGAAAAGCTGTTGCTGACGGCCCCGCCACCGCCGACTCCGTCGC
CCGGTTCGCCGCCGTGCCGTTGGAAGGCGATTTCTGGAAGGAATTCGACG
CGTGGGCGGACCGGCAGTACGTGGGGAATCGGGCGGCGGCGACGAAGTTG
AAGGTAGCGTTCCGAAAAGAGCACCGCATGTTCGTCGCGTCGCTCTGCCT
GGAGGACTTGGAGGAGATTTGCGCCAGCATGGCACAGTGA
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