mRNA_P-wetherbeei_contig527.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig527.1.1
Unique NamemRNA_P-wetherbeei_contig527.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A835YXL6_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.940e-38
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 3 
Query:  279 PMRTASASAMALLAKKRGGPDKGSEGAKPRERKQKDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYKK 596
            PM +       +  KK+G   + +EGA PRE+K KDDVIEVEGVVKESLP+AMFRVE+S  + +ILCTISGKIR+NFVRILVGDPVKVELSPYDLTRGRITFRYKK
Sbjct:   40 PMESRRQCTTIMHQKKKGRGGQNTEGATPREKKVKDDVIEVEGVVKESLPSAMFRVEISPTNQIILCTISGKIRKNFVRILVGDPVKVELSPYDLTRGRITFRYKK 145
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A6H5KG72_9PHAE (S1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG72_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 9.470e-38
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 3 
Query:  294 SASAMALLAKKRGGPDKGSEGAKPRERKQKDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYKK 596
            +A+  ALLAK        +EGAKPRERK+KDDVIEVEGVVKE LP+AMFRVE+     V+LCTISG+IR+NFVRILVGDPV+VELSPYDLTRGRITFRYKK
Sbjct:   74 AAATSALLAKXXXXXXXXNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 174
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: D7G916_ECTSI (S1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G916_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.160e-34
Identity = 77/127 (60.63%), Postives = 87/127 (68.50%), Query Frame = 3 
Query:  297 ASAMALLAKKRGGPDKGSEGAKPRERKQKDDVIE---------------------------VEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYKK 596
            A+  ALLAKK+G     +EGAKPRERK+KDDVIE                           VEGVVKE LP+AMFRVE+     V+LCTISG+IR+NFVRILVGDPV+VELSPYDLTRGRITFRYKK
Sbjct:    5 AATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEPDSIFTSHAEKDCSAKACRMLVLLSQKVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 131
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A6U1NIU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NIU1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.280e-31
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:  381 KDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYKK 596
            K+DVIEVEGVVKESLPNAMFRVEL  N NVILCTISGKIR+NFV++LVGD V+VELSPYDLTRGRITFRY+K
Sbjct:   90 KEDVIEVEGVVKESLPNAMFRVELEANQNVILCTISGKIRKNFVKVLVGDSVRVELSPYDLTRGRITFRYRK 161
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A7S4EBF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.270e-27
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:  366 RERKQKDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFR 587
            RERK KDD IEV+GVV E+LP+A FRVE+     V+LCTISGKIR+NFV+ILVGD VKVELSPYDLTRGRITFR
Sbjct:   54 RERKVKDDKIEVDGVVTEALPSANFRVEIGATKQVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 127
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: W7THD1_9STRA (Translation initiation factor if-1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THD1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.040e-24
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 3 
Query:  372 RKQKDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFR 587
            + ++ DVIEV+G+VKESLPNA FRVEL     VI+C+ SGK+R+NFVR+LVGDPVKVELSPYDLTRGRIT+R
Sbjct:   73 KNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A7R9YY09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY09_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.930e-24
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  366 RERKQKDDVIEVEGVVKESLPNAMFRVELSGNSNV---ILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFR 587
            RE+K+KDDVIEVEGVV ESLPNAMFR  + G  +    +L TISGKIR+NFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   77 REKKKKDDVIEVEGVVLESLPNAMFRCAIDGAPDTQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 153
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: W7D6D1_9LIST (Translation initiation factor IF-1 n=3 Tax=Bacilli TaxID=91061 RepID=W7D6D1_9LIST)

HSP 1 Score: 103 bits (257), Expect = 9.780e-24
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 3 
Query:  381 KDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYK 593
            K+DVIEVEGV+KE+LPNAMF+VEL  N + +L TISGKIR +++RIL GD V VELSPYDLTRGRIT+R+K
Sbjct:    3 KEDVIEVEGVIKETLPNAMFKVELE-NGHAVLATISGKIRMHYIRILPGDKVTVELSPYDLTRGRITYRFK 72
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A7S2A1G4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1G4_TRICV)

HSP 1 Score: 106 bits (264), Expect = 1.020e-23
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 3 
Query:  366 RERKQKDDVIEVEGVVKESLPNAMFRVELSG---NSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFR 587
            R +KQKDDVIEVEGVV ESLPNAMFR  + G       +L TISGKIR+NFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   76 RVKKQKDDVIEVEGVVLESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 152
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BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Match: A0A7S4KRC9_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KRC9_GUITH)

HSP 1 Score: 105 bits (263), Expect = 1.070e-23
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 3 
Query:  375 KQKDDVIEVEGVVKESLPNAMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRITFRYK 593
            K+K D IE++GVV ESLPNAMFRVEL  N  VIL  ISGKIR+NF++IL GD V  ELSPYDLT+GRITFRYK
Sbjct:   72 KKKKDCIELDGVVTESLPNAMFRVELEANQQVILAHISGKIRKNFIKILPGDKVTCELSPYDLTKGRITFRYK 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig527.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXL6_9STRA3.940e-3871.70S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5KG72_9PHAE9.470e-3874.26S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
D7G916_ECTSI1.160e-3460.63S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6U1NIU1_9STRA2.280e-3186.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EBF0_9STRA7.270e-2777.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7THD1_9STRA1.040e-2472.22Translation initiation factor if-1 n=2 Tax=Monodop... [more]
A0A7R9YY09_9STRA3.930e-2472.73Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
W7D6D1_9LIST9.780e-2471.83Translation initiation factor IF-1 n=3 Tax=Bacilli... [more]
A0A7S2A1G4_TRICV1.020e-2372.73Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4KRC9_GUITH1.070e-2372.60Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig527contigP-wetherbeei_contig527:2..2087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G916
Preferred nameinfA
PFAMseIF-1a
Model size1274
Max annot lvl2759|Eukaryota
KEGG koko:K02518
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009536,GO:0043021,GO:0043022,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877
Exons3
Evalue2.55e-39
EggNOG OGsCOG0361@1|root,2S8M9@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-15_002280.1
Descriptiontranslation initiation factor activity
Cds size471
COG categoryJ
BRITEko00000,ko03012
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.4698653-UTR-P-wetherbeei_contig527:1..891683186789.4698653-UTR-P-wetherbeei_contig527:1..89Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 2..89 +
1683186789.4830294-UTR-P-wetherbeei_contig527:459..5021683186789.4830294-UTR-P-wetherbeei_contig527:459..502Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 460..502 +
1683186789.5157688-UTR-P-wetherbeei_contig527:1415..20871683186789.5157688-UTR-P-wetherbeei_contig527:1415..2087Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 1416..2087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.4942315-CDS-P-wetherbeei_contig527:502..6431683186789.4942315-CDS-P-wetherbeei_contig527:502..643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig527 503..643 +
1683186789.5049808-CDS-P-wetherbeei_contig527:1085..14151683186789.5049808-CDS-P-wetherbeei_contig527:1085..1415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig527 1086..1415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig527.1.1prot_P-wetherbeei_contig527.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig527 503..1415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig527.1.1

>prot_P-wetherbeei_contig527.1.1 ID=prot_P-wetherbeei_contig527.1.1|Name=mRNA_P-wetherbeei_contig527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MAGALRLVFVIAACILSVVCQAFVTPFPAATVARTAGALRPCPACDVARP
MRTASASAMALLAKKRGGPDKGSEGAKPRERKQKDDVIEVEGVVKESLPN
AMFRVELSGNSNVILCTISGKIRQNFVRILVGDPVKVELSPYDLTRGRIT
FRYKKQ*
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mRNA from alignment at P-wetherbeei_contig527:2..2087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig527.1.1 ID=mRNA_P-wetherbeei_contig527.1.1|Name=mRNA_P-wetherbeei_contig527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2086bp|location=Sequence derived from alignment at P-wetherbeei_contig527:2..2087+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCGAGGGTCGCGACCCGCAGTAATCCAGAGCGCCCACCGTGGGCCTTC
GGATGTGGAAACGCGGAACTCAGTGAAACGAAAACAAGGTATGAAATGGA
ATATAGTGAAAGAGATGCAAAACGTCTCGCAAACAAAGTTTTCCTCTGAT
GCACCGGTAGCAGCGGACAAGCTCAACCTAATTCGTCGATATGCCTGAAG
GTTTGAAAGCGTCTATGCTTTGTTACCCGGCCCTATCGCAGCTCTGCAGA
GTGATGTTCGCTGCTGGAGAAGGTAGTGTGCCGCAGCAGCGGATCCCACG
AGAGCGGGGACACCACCACTTTTGAGGGGCGCACCTGATGTGTCGAAAAT
GCGGTGTTCGAAGCCTTGCCGCTACCCTAATCGTTTCCAGCGGAATAATT
CCCGAGTGAGGAAACCGAAGGACGCTCGCGCTTTCTCCTTACCATCTTCT
ACAAGCAGCTAAGACTTGCGGCTGACATAAAGCGCCAGCGCGCCTCAAAT
AATGGCGGGAGCATTGAGGCTCGTCTTCGTCATAGCCGCATGTATCCTGT
CCGTCGTTTGCCAGGCTTTCGTAACGCCATTTCCCGCTGCGACCGTCGCA
AGAACGGCGGGAGCGCTGAGACCATGTCCTGCATGTGACGTGGTGAGGCA
GCTCGTCCAGTTCGTATCCCTCGCTCTGAGTCCTTGCATGTGAAACCCCC
TTTACGTTGACAAGCTCGGTTCGATGCCTTTGATGAATGTCGCTCAACTT
TGCGCCCCTGTGAATGCTGTCATCAACCCGTAAGTGCTAATGTTTGATCA
TTCGTTTCGTGGCTCTGTATTGTTTCTCTTGGAGAGTTTGGCACCTTGTT
CTTTCCGCCCTGACGCTTCCGACTGAGTGCTCATTCCTTCGTCGAATTTC
TTTATCCCCGCCGCATTTGAACGGTGCTTTCCTTCGTTTGGCTCGCGCTA
CGTTGCCGTTTCTGCGTCGTCCCACCCGGGCTCTCTTGATAACCAAAAAC
ACTTCGCCGCACTCATCCATGCACCTCTCCGAACCCCCAAACGCTGCAAC
CGCGCCGTCGAAAACGAAAACTACGCCACACTAGGCGCGGCCGATGCGAA
CAGCGTCGGCGTCGGCAATGGCCCTTTTGGCCAAGAAGCGTGGCGGGCCC
GACAAAGGCAGCGAGGGCGCCAAGCCGCGGGAGCGCAAGCAGAAGGACGA
CGTCATCGAGGTGGAGGGCGTCGTAAAAGAGTCGCTGCCGAACGCCATGT
TCCGCGTGGAACTTTCCGGGAACAGCAACGTGATTCTGTGCACCATTTCC
GGAAAAATCCGACAAAACTTCGTGCGGATCCTCGTGGGCGACCCGGTAAA
GGTGGAGCTCAGCCCGTACGACCTGACGCGCGGCCGAATAACGTTCCGTT
ACAAGAAGCAATAACTCCGGAGCCGCCGCTGCTCGAACCGCAAAGGCCGC
TGCAGCTTGAACTGGAATGGACGGCCGGTTCGGGCTGTCGCAACGCCGCC
GTCGCCCTCGCTGTTGCTGCAACAGCGGGCAGCAGCAGCCGTCGCGCTGC
CGGCACTGGGGCACTGTATCCTGGCACCGAACGCCGCTACAGCCGGGCCC
CCACCGGTGGCAGAGGCGGCGGCTGTTGCCAGCCGCAGCTGCAGCTGACC
GGCGGCTGCGCGGGCCGAACGGCAGCGACGGCGTCGTGCTTGCGGTAGCG
CCGAGCGATTCGGAACGGCTCGGACTTCGTCAGAGGAACGGTTACCCTTT
TGGCATAGACGCGCTGCTGGGGAAAGAGGGGCCAGGGAAGAGAGAGATGA
CGTGACCTTATTAGACGCGCTAAAGATGACTTCACACCGTGTGATGTCTC
CATGCATCTTCTCTTTCGCGGCGTGGCACAGTGCTCCATTGGGATTGTAG
AGCATACACAACCAGAAAGCGCAAGGGCAGCGAAGGAGCGCAATGAATGT
GAGTGCTCGAAGAGACAAAGGATGCTCACAAGCGCGAATCTTTCCAGAAA
ATACCAGGTACCTTTGAAAGGAGTGAATTGGTGGATTTTGAGCTCTCGCC
ACCGCCAAAAGGTGCGGAGATCACGCACTCGCTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig527:2..2087+

>mRNA_P-wetherbeei_contig527.1.1 ID=mRNA_P-wetherbeei_contig527.1.1|Name=mRNA_P-wetherbeei_contig527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig527:2..2087+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGGAGCATTGAGGCTCGTCTTCGTCATAGCCGCATGTATCCTGTC
CGTCGTTTGCCAGGCTTTCGTAACGCCATTTCCCGCTGCGACCGTCGCAA
GAACGGCGGGAGCGCTGAGACCATGTCCTGCATGTGACGTGGCGCGGCCG
ATGCGAACAGCGTCGGCGTCGGCAATGGCCCTTTTGGCCAAGAAGCGTGG
CGGGCCCGACAAAGGCAGCGAGGGCGCCAAGCCGCGGGAGCGCAAGCAGA
AGGACGACGTCATCGAGGTGGAGGGCGTCGTAAAAGAGTCGCTGCCGAAC
GCCATGTTCCGCGTGGAACTTTCCGGGAACAGCAACGTGATTCTGTGCAC
CATTTCCGGAAAAATCCGACAAAACTTCGTGCGGATCCTCGTGGGCGACC
CGGTAAAGGTGGAGCTCAGCCCGTACGACCTGACGCGCGGCCGAATAACG
TTCCGTTACAAGAAGCAATAA
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