mRNA_P-wetherbeei_contig5269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5269.1.1
Unique NamemRNA_P-wetherbeei_contig5269.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5269.1.1 vs. uniprot
Match: D8LES7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.650e-24
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 2 
Query:  152 PAYIRGALPFRNEVEGSTWQVDIALAITQEAVEAWDPTALPPRPVTRLWPRGWQP-AEPVSLLETMRTAYFGSAGQALPHAGRQVPQIENNLYTWLTCRKKQWKKRRERKR 481
            PAY+  ALP+R + E   W +D ALAI +EAVEA+DP  +  RP    WP   Q  A+ +  +E MR+AYF     +LP     VP+IE+N Y WL+ RK+QW+K R  KR
Sbjct:   15 PAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPQRMQARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKR 125
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BLAST of mRNA_P-wetherbeei_contig5269.1.1 vs. uniprot
Match: A0A6H5KM78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM78_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.570e-23
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2 
Query:  146 ERPAYIRGALPFRNEVEGSTWQVDIALAITQEAVEAWDPTALPPRPVTRLWPRGWQP-AEPVSLLETMRTAYFGSAGQALPHAGRQVPQIENNLYTWLTCRKKQWKKRRERKR 481
            E PAY+  ALP+R + E   W +D ALAI +EAVEA+DP  +  RP    WP   Q  A+ +  +E MR+AYF     +LP     VP+IE+N Y WL+ RK+QW+K R  KR
Sbjct:   13 EGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPQRMKARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKR 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES7_ECTSI5.650e-2445.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM78_9PHAE7.570e-2346.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5269contigP-wetherbeei_contig5269:409..1742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size745
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005420.1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.24725-UTR-P-wetherbeei_contig5269:408..4801683186789.24725-UTR-P-wetherbeei_contig5269:408..480Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5269 409..480 -
1683186789.2946837-UTR-P-wetherbeei_contig5269:1621..17421683186789.2946837-UTR-P-wetherbeei_contig5269:1621..1742Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5269 1622..1742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.2653434-CDS-P-wetherbeei_contig5269:480..5311683186789.2653434-CDS-P-wetherbeei_contig5269:480..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5269 481..531 -
1683186789.2740555-CDS-P-wetherbeei_contig5269:912..11341683186789.2740555-CDS-P-wetherbeei_contig5269:912..1134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5269 913..1134 -
1683186789.286008-CDS-P-wetherbeei_contig5269:1342..16211683186789.286008-CDS-P-wetherbeei_contig5269:1342..1621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5269 1343..1621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5269.1.1prot_P-wetherbeei_contig5269.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5269 481..1621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5269.1.1

>prot_P-wetherbeei_contig5269.1.1 ID=prot_P-wetherbeei_contig5269.1.1|Name=mRNA_P-wetherbeei_contig5269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MSQAPNPAERPAYIRGALPFRNEVEGSTWQVDIALAITQEAVEAWDPTAL
PPRPVTRLWPRGWQPAEPVSLLETMRTAYFGSAGQALPHAGRQVPQIENN
LYTWLTCRKKQWKKRRERKRGYASNDRLPQWLEMSVERGERPTPETGFAT
WLELRKSEWNMLKQRRQAQRLLLLSSGGTGRGS*
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mRNA from alignment at P-wetherbeei_contig5269:409..1742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5269.1.1 ID=mRNA_P-wetherbeei_contig5269.1.1|Name=mRNA_P-wetherbeei_contig5269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1334bp|location=Sequence derived from alignment at P-wetherbeei_contig5269:409..1742- (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCTGCGAAAAGAGATCAGAAAGCGGTACTTATCCTTGCTCGTTCCT
CCTCTTCTTATTCCTCTGGCCCGGCGAAGAAGCCGGCTGGATCGCACGTT
CTTCGTGTTGTGAAGCTGTCCATGTCTCAGGCTCCAAATCCTGCAGAGCG
GCCGGCTTACATCAGAGGAGCGCTTCCCTTCCGCAACGAGGTGGAAGGCT
CAACCTGGCAAGTCGATATTGCGCTGGCAATCACGCAGGAGGCGGTCGAA
GCCTGGGATCCGACGGCGCTGCCTCCTCGGCCCGTCACAAGGCTTTGGCC
GCGGGGCTGGCAGCCCGCTGAGCCCGTCAGCCTTCTCGAAACGATGAGAA
CGGCGTACTTTGGCTCGGCAGGCCAGGCGCTGCCGCATGCGGGCCGCCAG
GTAGGTGTGTAAGGTTGGAGTGGTTTGCCCCAGTAAAGCAGAACCATCGC
AGCGCTGCGCCAATTCGAGGCGCATTGAGTACGTTTGTTTATAGCTTAAT
AAGGTTTCTGCCTTTCGGTGCTATCATTTGCCTGGCTTGCCTGCGCATGC
GAAGCTGTCCAAAATGGCCTCTCCTTCCCCCATTGGTCGCTGCCTGCTGC
CCAGACAGGTGCCACAAATAGAGAATAACCTCTACACGTGGCTGACCTGC
CGGAAGAAGCAGTGGAAGAAGCGCCGCGAGCGGAAGCGAGGCTACGCTTC
GAACGACAGGCTGCCGCAGTGGCTGGAAATGTCGGTGGAGCGAGGGGAGC
GGCCGACCCCCGAAACCGGCTTCGCGACGTGGCTCGAGCTTCGAAAGTCC
GAGTGGAACATGCTGAAGCAGCGGCGACAGGTAAGCAAGGGGTTGCGTTG
CTGCAGTTAGGATTGCGTTTTTCATGTGGAGAACTCTGAAGTCTGTTTCT
GTTTTGAAGAGTTAGAATTGCAAGGAACGCCAATTGGTTCAGCGTTGTCG
CCTTACTAGATTGTAATGAGTGGTTAACTACTCTTATCGAAAATGCACCA
GTTCGTTTCTTTCTTACATCGCCTGGTTGGTGGCGGGAAAGTTGTGTGCT
CTGTGTGGCGGCGTGGCGGTCGCTGGAATGTGGACATGCCCATCGCAAGA
TTTATGGCCTTCAGAGAGAAAAGGAATGCTCCAATCGACCACATTTTGAC
CGTTCAACTGCAACGCCCCCCCTCTTGTCAAAAATGAACCGTCCTTCTCC
AATTCGTCCAGGCACAACGGCTACTCCTGCTGTCTTCAGGAGGGACTGGC
CGGGGCAGCTGATGTTTATATGGGAAGGAAGAAAAAGCGAGGATCGAGCA
CACATGGCAAATACATCAAAGTAGTTACGACGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5269:409..1742-

>mRNA_P-wetherbeei_contig5269.1.1 ID=mRNA_P-wetherbeei_contig5269.1.1|Name=mRNA_P-wetherbeei_contig5269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig5269:409..1742- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCAGGCTCCAAATCCTGCAGAGCGGCCGGCTTACATCAGAGGAGC
GCTTCCCTTCCGCAACGAGGTGGAAGGCTCAACCTGGCAAGTCGATATTG
CGCTGGCAATCACGCAGGAGGCGGTCGAAGCCTGGGATCCGACGGCGCTG
CCTCCTCGGCCCGTCACAAGGCTTTGGCCGCGGGGCTGGCAGCCCGCTGA
GCCCGTCAGCCTTCTCGAAACGATGAGAACGGCGTACTTTGGCTCGGCAG
GCCAGGCGCTGCCGCATGCGGGCCGCCAGGTGCCACAAATAGAGAATAAC
CTCTACACGTGGCTGACCTGCCGGAAGAAGCAGTGGAAGAAGCGCCGCGA
GCGGAAGCGAGGCTACGCTTCGAACGACAGGCTGCCGCAGTGGCTGGAAA
TGTCGGTGGAGCGAGGGGAGCGGCCGACCCCCGAAACCGGCTTCGCGACG
TGGCTCGAGCTTCGAAAGTCCGAGTGGAACATGCTGAAGCAGCGGCGACA
GGCACAACGGCTACTCCTGCTGTCTTCAGGAGGGACTGGCCGGGGCAGCT
GA
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