mRNA_P-wetherbeei_contig52673.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52673.2.1
Unique NamemRNA_P-wetherbeei_contig52673.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52673.2.1 vs. uniprot
Match: A0A4R6WQI3_9PROT (PAS domain-containing protein n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WQI3_9PROT)

HSP 1 Score: 144 bits (363), Expect = 2.260e-41
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:    1 LVGNEIVATFGFEPRGKSRGEIRRTRVAPAKYADFDQTSRQMHDIARRGVVAYTHDHMTSYNLDYLAYARLMLPISEDGARITGISGALMMSGPDLPFWRNFSELHIEVPIEIFGLRAEKPPGAA 375
            L G  I   FGFEPRG +R EIR+  VAPA +ADFD+TSRQ HD+A R +VAYTHD MTSY+  ++AYARLMLP+SEDG   TG+ G ++ S    PFW +F ELH E+P+   G+     PGAA
Sbjct:   65 LAGGAICQAFGFEPRGLTRAEIRQRHVAPAAHADFDETSRQTHDVAARRIVAYTHDRMTSYDRQFIAYARLMLPLSEDGIHATGVLGCILTSADRDPFWNDFVELHHELPLAELGI---PDPGAA 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52673.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4R6WQI3_9PROT2.260e-4156.00PAS domain-containing protein n=1 Tax=Dongia mobil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52673contigP-wetherbeei_contig52673:169..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size375
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.049325-CDS-P-wetherbeei_contig52673:168..5431683186789.049325-CDS-P-wetherbeei_contig52673:168..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52673 169..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52673.2.1prot_P-wetherbeei_contig52673.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52673 169..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52673.2.1

>prot_P-wetherbeei_contig52673.2.1 ID=prot_P-wetherbeei_contig52673.2.1|Name=mRNA_P-wetherbeei_contig52673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
LVGNEIVATFGFEPRGKSRGEIRRTRVAPAKYADFDQTSRQMHDIARRGV
VAYTHDHMTSYNLDYLAYARLMLPISEDGARITGISGALMMSGPDLPFWR
NFSELHIEVPIEIFGLRAEKPPGAA
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mRNA from alignment at P-wetherbeei_contig52673:169..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52673.2.1 ID=mRNA_P-wetherbeei_contig52673.2.1|Name=mRNA_P-wetherbeei_contig52673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig52673:169..543- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGGGCAACGAGATCGTCGCCACGTTCGGTTTCGAGCCGCGCGGCAA
GAGCCGGGGCGAGATCCGCCGCACCCGCGTCGCCCCGGCGAAATACGCCG
ATTTCGACCAGACCTCGCGCCAGATGCACGACATCGCGCGGCGCGGCGTG
GTCGCCTACACGCACGACCACATGACGTCCTACAACCTGGACTATCTGGC
CTATGCGCGGCTGATGCTGCCGATCTCGGAAGACGGCGCCCGCATCACCG
GGATCTCCGGTGCGCTGATGATGTCGGGTCCCGATCTGCCGTTCTGGCGC
AATTTCAGCGAGCTTCACATCGAAGTGCCGATCGAGATCTTCGGGCTGCG
CGCGGAAAAGCCGCCGGGCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52673:169..543-

>mRNA_P-wetherbeei_contig52673.2.1 ID=mRNA_P-wetherbeei_contig52673.2.1|Name=mRNA_P-wetherbeei_contig52673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig52673:169..543- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGGGCAACGAGATCGTCGCCACGTTCGGTTTCGAGCCGCGCGGCAA
GAGCCGGGGCGAGATCCGCCGCACCCGCGTCGCCCCGGCGAAATACGCCG
ATTTCGACCAGACCTCGCGCCAGATGCACGACATCGCGCGGCGCGGCGTG
GTCGCCTACACGCACGACCACATGACGTCCTACAACCTGGACTATCTGGC
CTATGCGCGGCTGATGCTGCCGATCTCGGAAGACGGCGCCCGCATCACCG
GGATCTCCGGTGCGCTGATGATGTCGGGTCCCGATCTGCCGTTCTGGCGC
AATTTCAGCGAGCTTCACATCGAAGTGCCGATCGAGATCTTCGGGCTGCG
CGCGGAAAAGCCGCCGGGCGCCGCC
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