mRNA_P-wetherbeei_contig52669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52669.1.1
Unique NamemRNA_P-wetherbeei_contig52669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A2E4QVC5_9PROT (Uncharacterized protein n=1 Tax=Hirschia sp. TaxID=2024835 RepID=A0A2E4QVC5_9PROT)

HSP 1 Score: 127 bits (318), Expect = 1.170e-33
Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    1 LGRNLELHLPAVPGYPETLNATQTVVGQYGERRAAFQAILTLSPKTAEVVLTTPGGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPG-VTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTIITE 471
            +  ++EL LP +PGYP+     QT+VG+Y  R  AFQA L+LSP   EVVL  P GPR++ +TWTE GI E R+ LAP DL G+N+L DIF+S WP  S+ DALP   V    +G++       R I   D           +LT++  GY L II+E
Sbjct:   52 IAEDVELTLPLMPGYPQDALLFQTLVGRYDGRTRAFQATLSLSPDRVEVVLLAPSGPRVMQLTWTEQGIEETRSNLAPEDLNGLNILADIFLSTWPKQSVIDALPDNAVLLTGDGNREIWSGKQRLIDLEDGGVDEQGRKHARLTHVQRGYVLDIISE 209          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: UPI00143D68D4 (DUF3261 domain-containing protein n=1 Tax=Brevundimonas sp. M20 TaxID=2591463 RepID=UPI00143D68D4)

HSP 1 Score: 115 bits (288), Expect = 2.660e-29
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 1
Query:   10 NLELHLPAVPGYPETLNATQTVVGQYGERRAAFQAILTLSPKTAEVVLTTPGGP-RILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSK-RTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTI 462
            ++ L LP+ P YP+T    Q    ++G+R+AAF++IL LSP   E+V+T  GG  R+ TITWT AG+ E R+P+AP  +   N+L DIF++LWP  ++  ALP GVT  E     R V+  D  I+E+       A  R+   NL FGY +TI
Sbjct:   45 DIVLTLPSPPAYPQTRTLMQAGQIRHGDRQAAFESILALSPDEVEIVITMAGGGLRLSTITWTAAGVRETRSPIAPDSIPVANILADIFIALWPAEAINAALPEGVTLTETADGGRQVRRGDELISEIVPDAANPA--RRVSRNLAFGYEVTI 195          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A514C2W6_9CAUL (DUF3261 domain-containing protein n=1 Tax=Brevundimonas sp. M20 TaxID=2591463 RepID=A0A514C2W6_9CAUL)

HSP 1 Score: 115 bits (288), Expect = 1.060e-28
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 1
Query:   10 NLELHLPAVPGYPETLNATQTVVGQYGERRAAFQAILTLSPKTAEVVLTTPGGP-RILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSK-RTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTI 462
            ++ L LP+ P YP+T    Q    ++G+R+AAF++IL LSP   E+V+T  GG  R+ TITWT AG+ E R+P+AP  +   N+L DIF++LWP  ++  ALP GVT  E     R V+  D  I+E+       A  R+   NL FGY +TI
Sbjct:  102 DIVLTLPSPPAYPQTRTLMQAGQIRHGDRQAAFESILALSPDEVEIVITMAGGGLRLSTITWTAAGVRETRSPIAPDSIPVANILADIFIALWPAEAINAALPEGVTLTETADGGRQVRRGDELISEIVPDAANPA--RRVSRNLAFGYEVTI 252          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A2T6F9S8_9BURK (DUF3261 domain-containing protein n=1 Tax=Glaciimonas sp. PCH181 TaxID=2133943 RepID=A0A2T6F9S8_9BURK)

HSP 1 Score: 68.9 bits (167), Expect = 2.630e-11
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   52 TLNATQTVVGQYGERRAAFQAILTLSPKTAEVVLTTPGGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTIITEKG 477
            T++  Q +  +   R     A L + P+   +V     G R+LT+ +    +   R P+ P+ ++  +VL D  ++LWP+A++R ALPPG   E+ G +RT+   D  +  ++         +  LTNL + Y LTI +E G
Sbjct:   48 TISLQQHLTVERNGRTDQLDAALEIDPQQLTMV-GLAFGQRVLTLHYDGQNLQSWRHPMLPSQVRAEDVLEDTQLTLWPVAAIRQALPPGWKIEQQGLRRTISLDDVPVTVINYSSAVPWGCKVALTNLRYHYRLTIESEGG 188          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: UPI0010BFD81D (DUF3261 domain-containing protein n=1 Tax=Massilia sp. HP4 TaxID=2562316 RepID=UPI0010BFD81D)

HSP 1 Score: 67.8 bits (164), Expect = 4.640e-11
Identity = 40/140 (28.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   49 ETLNATQTVVGQYGERRAAFQAILTLSPKTAEVVLTTPGGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTIIT 468
            ET++  Q +  + G       A L + P+   +V    G  R+L++ +    + E R P+ P+ ++  +VL D+ ++LWPLA +  ALPPG T E+ G +RT++     +A +D            L N+ + Y LT+++
Sbjct:   45 ETISVQQQLTVERGGSTNDLVAALEVDPQRVSLVGLALG-LRVLSLEFDGKELTEWRHPMLPSQVRAADVLEDLQLTLWPLAEIARALPPGWTIEDQGLRRTLRREGELVATIDYSGMPRWTGTAVLDNVRYKYRLTVVS 183          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A1I1QPJ1_9BURK (Uncharacterized protein n=4 Tax=Cupriavidus TaxID=106589 RepID=A0A1I1QPJ1_9BURK)

HSP 1 Score: 64.3 bits (155), Expect = 1.170e-9
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  163 GGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTIITEKGE 480
            GG  +  + W  + +   R P APA+L    +L D+ +SLWP+A++R ALPPG   +   + R + A D  +AE+      DA   + +   D GY LTI T +GE
Sbjct:   95 GGQVLARLDWDGSDLHVTRAPWAPAELVPERILSDLQLSLWPVAAIRAALPPGWRLDATPAMRRLLAGDELVAEI---RYPDAATTEFVQRRD-GYRLTIRTLQGE 196          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A1I1DPL4_9BURK (Uncharacterized protein n=1 Tax=Collimonas sp. OK412 TaxID=1801619 RepID=A0A1I1DPL4_9BURK)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-9
Identity = 32/99 (32.32%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  166 GPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTI 462
            G R+L++ +    +   R P+ P+ ++  +V+ D  ++LWPLA++R+ALPPG   E+ G +RT+      +  +D    T    + +L NL + Y LTI
Sbjct:   87 GQRVLSMNYDGKTLQSWRHPMLPSQVRVEDVMEDTQLTLWPLAAIREALPPGWQIEQQGLRRTLSLQGEPVMVIDYSAPTPWDGKVELNNLRYHYHLTI 185          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: G0AK46_COLFT (Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) TaxID=1005048 RepID=G0AK46_COLFT)

HSP 1 Score: 61.6 bits (148), Expect = 1.280e-8
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  166 GPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTI 462
            G R+L++ +    +   R P+ P+ ++  +V+ D  ++LWPLA++R ALPPG   E+ G +RT+      +  +D    T    + +L NL + Y LTI
Sbjct:   93 GQRVLSMNYDGKTLQSWRHPMLPSQVRVEDVMEDTQLTLWPLAAIRAALPPGWQIEQQGLRRTLSLQGEPVMVIDYSTPTPWDGKVELNNLRYHYHLTI 191          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: A0A2S9H5A3_9BURK (Uncharacterized protein n=1 Tax=Solimicrobium silvestre TaxID=2099400 RepID=A0A2S9H5A3_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 1.870e-7
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 1
Query:  166 GPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTI 462
            G R+L++ +    +   R  + P  ++  ++L DI ++LWP+ S+R ALP G T E+NG +RT+      +  ++           KL NL + YSL I
Sbjct:   81 GQRVLSLNYDGKQVSSWRHVMLPKQVRAEDILEDIQLTLWPIESIRKALPSGWTIEDNGLRRTLMMGGEVVCIINYSAMPRWSGTVKLENLRYHYSLII 179          
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Match: UPI001E4C3AF1 (DUF3261 domain-containing protein n=2 Tax=Cupriavidus TaxID=106589 RepID=UPI001E4C3AF1)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-6
Identity = 37/127 (29.13%), Postives = 59/127 (46.46%), Query Frame = 1
Query:   88 GERRAAFQAILTLSPKTAEVVLTTPGGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASLRDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGYSLTIIT 468
            GE     QA+L        +     GG  +  + W    +   R+P APA+L    +L ++ +SLWP+A++  ALPPG   +    +R ++A   T+AE+   +     + Q       GY LTI T
Sbjct:   73 GEEHREIQALLEADAAHTRLAALA-GGQVLARLDWDGRDLRVARSPWAPAELVPERILSEMQLSLWPVAAIAAALPPGWRLDAVAGRRVLRAGGETVAEIRYPDAQTIEFEQYRD----GYRLTIRT 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2E4QVC5_9PROT1.170e-3344.30Uncharacterized protein n=1 Tax=Hirschia sp. TaxID... [more]
UPI00143D68D42.660e-2942.48DUF3261 domain-containing protein n=1 Tax=Brevundi... [more]
A0A514C2W6_9CAUL1.060e-2842.48DUF3261 domain-containing protein n=1 Tax=Brevundi... [more]
A0A2T6F9S8_9BURK2.630e-1129.58DUF3261 domain-containing protein n=1 Tax=Glaciimo... [more]
UPI0010BFD81D4.640e-1128.57DUF3261 domain-containing protein n=1 Tax=Massilia... [more]
A0A1I1QPJ1_9BURK1.170e-935.85Uncharacterized protein n=4 Tax=Cupriavidus TaxID=... [more]
A0A1I1DPL4_9BURK3.300e-932.32Uncharacterized protein n=1 Tax=Collimonas sp. OK4... [more]
G0AK46_COLFT1.280e-832.32Uncharacterized protein n=1 Tax=Collimonas fungivo... [more]
A0A2S9H5A3_9BURK1.870e-731.31Uncharacterized protein n=1 Tax=Solimicrobium silv... [more]
UPI001E4C3AF11.680e-629.13DUF3261 domain-containing protein n=2 Tax=Cupriavi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52669contigP-wetherbeei_contig52669:61..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog582402.Hbal_1298
PFAMsDUF3261
Model size483
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.14e-27
EggNOG OGs2BPTI@1|root,32IKW@2|Bacteria,1Q1VK@1224|Proteobacteria,2UH9Z@28211|Alphaproteobacteria
DescriptionProtein of unknown function (DUF3261)
Cds size483
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.8705847-CDS-P-wetherbeei_contig52669:60..5431683186788.8705847-CDS-P-wetherbeei_contig52669:60..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52669 61..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52669.1.1prot_P-wetherbeei_contig52669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52669 61..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52669.1.1

>prot_P-wetherbeei_contig52669.1.1 ID=prot_P-wetherbeei_contig52669.1.1|Name=mRNA_P-wetherbeei_contig52669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
LGRNLELHLPAVPGYPETLNATQTVVGQYGERRAAFQAILTLSPKTAEVV
LTTPGGPRILTITWTEAGIVEDRTPLAPADLKGINVLGDIFVSLWPLASL
RDALPPGVTAEENGSKRTVKAADRTIAEVDTLEKTDALWRQKLTNLDFGY
SLTIITEKGE*
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mRNA from alignment at P-wetherbeei_contig52669:61..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52669.1.1 ID=mRNA_P-wetherbeei_contig52669.1.1|Name=mRNA_P-wetherbeei_contig52669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig52669:61..543- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCCGGAATCTCGAGCTGCACCTGCCCGCCGTGCCGGGCTATCCCGA AACGCTGAACGCCACGCAGACCGTGGTCGGCCAATACGGTGAACGCCGCG CGGCCTTTCAGGCAATCCTCACACTGTCGCCGAAGACCGCAGAAGTCGTG CTCACCACGCCGGGCGGTCCGCGCATCCTCACCATCACCTGGACGGAAGC CGGCATCGTCGAGGACCGCACGCCTCTGGCGCCGGCGGATCTCAAAGGCA TCAACGTGCTGGGCGATATCTTCGTCTCGCTCTGGCCGCTCGCGTCGCTG CGCGACGCACTCCCGCCCGGTGTGACGGCGGAAGAGAATGGTTCCAAACG GACCGTAAAGGCCGCGGATCGCACGATCGCCGAAGTCGACACCCTCGAGA AAACCGATGCGCTGTGGCGCCAGAAGCTCACCAACCTTGATTTCGGGTAC AGCCTGACGATCATCACCGAGAAGGGGGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52669:61..543-

>mRNA_P-wetherbeei_contig52669.1.1 ID=mRNA_P-wetherbeei_contig52669.1.1|Name=mRNA_P-wetherbeei_contig52669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig52669:61..543- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCCGGAATCTCGAGCTGCACCTGCCCGCCGTGCCGGGCTATCCCGA
AACGCTGAACGCCACGCAGACCGTGGTCGGCCAATACGGTGAACGCCGCG
CGGCCTTTCAGGCAATCCTCACACTGTCGCCGAAGACCGCAGAAGTCGTG
CTCACCACGCCGGGCGGTCCGCGCATCCTCACCATCACCTGGACGGAAGC
CGGCATCGTCGAGGACCGCACGCCTCTGGCGCCGGCGGATCTCAAAGGCA
TCAACGTGCTGGGCGATATCTTCGTCTCGCTCTGGCCGCTCGCGTCGCTG
CGCGACGCACTCCCGCCCGGTGTGACGGCGGAAGAGAATGGTTCCAAACG
GACCGTAAAGGCCGCGGATCGCACGATCGCCGAAGTCGACACCCTCGAGA
AAACCGATGCGCTGTGGCGCCAGAAGCTCACCAACCTTGATTTCGGGTAC
AGCCTGACGATCATCACCGAGAAGGGGGAGTGA
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