mRNA_P-wetherbeei_contig5266.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5266.3.1
Unique NamemRNA_P-wetherbeei_contig5266.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5266.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5266contigP-wetherbeei_contig5266:1415..3913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1845
Hectar predicted targeting categoryother localisation
Exons3
Cds size1845
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.83048-CDS-P-wetherbeei_contig5266:1414..17051683186788.83048-CDS-P-wetherbeei_contig5266:1414..1705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5266 1415..1705 -
1683186788.8394682-CDS-P-wetherbeei_contig5266:2191..34451683186788.8394682-CDS-P-wetherbeei_contig5266:2191..3445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5266 2192..3445 -
1683186788.8476264-CDS-P-wetherbeei_contig5266:3613..39131683186788.8476264-CDS-P-wetherbeei_contig5266:3613..3913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5266 3614..3913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5266.3.1prot_P-wetherbeei_contig5266.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5266 1415..3913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5266.3.1

>prot_P-wetherbeei_contig5266.3.1 ID=prot_P-wetherbeei_contig5266.3.1|Name=mRNA_P-wetherbeei_contig5266.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=615bp
LAAAAAAEHEALEALRGELAALAATNAELSKRLEEAKSAAAAAVAAVEHQ
GATETAAAEGAGAAAEDGSSAAAAADAAALLAGKAAALEASRDEANVRLG
DLAAAKAEADAQRARAAEAEAQLSRAVKELASSRRDALATSAALAAKAGS
LEEREEASETKAIALTTVYEAAQANAAINTGATVAEPSGSASAAAGKATK
EAAETAAAEMADAQERADSLAVALEAAKAESRSSAAAATAALDSLERERV
AAEAAAAEAAKAAAVQLRDAEVVAAVAKEEAAAATRRVKELEAECRAAQD
GMVTAADEAAAAAERVAALEVALAEARAGNAEGAILAATTAKETEAAAAA
ATAAVEAATATATATEELATALAAQVAALTEELAGAQASGAELSAANAAA
ALEAEAVAVQLRDAEAAAVAAKEEAAAATRRAEELDVEYQAVREYAATAA
AEAAATAERVAALEVSLIEARAGNAEAASAAAATAALTREAAAATATAEA
VAATATAAEERATELAAQAEKAAAAAAAVAEAARVEVATALAECDKARGA
AAAAETALAEARQDAAMAAEAAGAAAAAAAAAGEAALAAQTEKHRRALAA
ADETRVELDGKVKRL
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mRNA from alignment at P-wetherbeei_contig5266:1415..3913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5266.3.1 ID=mRNA_P-wetherbeei_contig5266.3.1|Name=mRNA_P-wetherbeei_contig5266.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2499bp|location=Sequence derived from alignment at P-wetherbeei_contig5266:1415..3913- (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGGCGGCGGCGGCGGCCGAACACGAGGCATTAGAGGCGCTCCGCGG
CGAATTGGCCGCACTCGCCGCCACCAACGCCGAGCTTTCGAAGCGCCTTG
AGGAGGCAAAAAGCGCGGCGGCGGCGGCGGTGGCCGCGGTCGAACACCAA
GGGGCGACCGAGACGGCTGCCGCTGAGGGCGCGGGCGCCGCAGCGGAAGA
CGGAAGCTCCGCTGCCGCCGCCGCGGATGCCGCAGCTCTTCTGGCCGGAA
AAGCGGCGGCCCTCGAGGCGTCGCGAGACGAAGCCAACGTGCGGTTGGGG
GTCCTCGCTGCCCGTGTTGAAAACCTGCGTTGCGCATTGGACGGTGCGTC
CGCGGCGCGGAATCACTCTGCCGACGCGGTAGCGGCCGCCGATGCTTTGG
CGGGAGAAGCAGTCGCTTCGGCGGCTTCCCGGGGGACCAGGGAGAAGCAG
CAGCGCCTTCTACTTGAGGATTTGGCGGCGGCCAAAGCAGAGGCGGATGC
GCAGCGGGCCCGAGCGGCGGAGGCTGAGGCACAGCTTTCGAGGGCGGTGA
AAGAGCTTGCGTCATCGAGACGAGATGCCCTTGCGACTTCGGCGGCTTTG
GCGGCGAAGGCGGGCTCGTTGGAAGAGAGAGAGGAGGCATCGGAGACGAA
GGCGATCGCGCTGACAACGGTGTACGAGGCAGCGCAGGCGAATGCCGCGA
TAAACACAGGGGCGACCGTTGCGGAACCGAGTGGCTCCGCATCAGCTGCT
GCAGGGAAGGCGACAAAAGAAGCTGCCGAAACGGCCGCTGCAGAAATGGC
GGATGCTCAGGAGAGAGCCGACTCTCTGGCCGTGGCCCTAGAAGCGGCGA
AGGCGGAGAGCCGCAGCTCTGCGGCGGCGGCGACGGCGGCGCTGGACTCG
CTGGAGCGCGAACGCGTCGCTGCCGAGGCGGCTGCGGCCGAAGCAGCCAA
GGCGGCGGCGGTGCAGCTTCGTGATGCAGAAGTTGTCGCAGCGGTAGCGA
AGGAAGAGGCGGCGGCGGCGACGCGGCGGGTCAAAGAGCTGGAGGCTGAG
TGCCGCGCGGCGCAGGATGGCATGGTGACGGCGGCGGACGAAGCGGCAGC
GGCGGCGGAACGTGTCGCAGCCCTGGAGGTGGCGCTGGCCGAGGCGCGCG
CCGGAAACGCAGAGGGTGCAATCCTGGCAGCGACTACCGCTAAGGAGACG
GAAGCCGCTGCGGCGGCAGCGACCGCGGCGGTGGAGGCGGCGACAGCCAC
GGCAACTGCCACTGAAGAACTGGCGACGGCGCTGGCAGCGCAGGTTGCCG
CGTTGACGGAAGAGCTCGCCGGGGCGCAGGCTTCTGGTGCAGAGCTTTCA
GCGGCCAACGCGGCCGCGGCTTTGGAGGCGGAAGCGGTGGCGGTGCAGCT
TCGCGACGCTGAGGCGGCGGCGGTGGCGGCGAAGGAGGAGGCAGCGGCGG
CGACGCGGCGGGCGGAGGAGCTAGATGTCGAGTACCAGGCGGTCCGCGAA
TACGCAGCGACGGCGGCCGCCGAAGCGGCAGCGACTGCGGAACGCGTGGC
GGCGCTTGAGGTGTCCTTGATCGAGGCGCGCGCCGGTAACGCGGAAGCTG
CCAGTGCAGCGGCGGCGACAGCCGCCTTAACAAGGGAAGCAGCAGCGGCG
ACGGCGACGGCAGAGGCTGTGGCAGCCACGGCAACCGCAGCCGAAGAGCG
GGCAACGGAACTGGCGGCGCAGGTTGCCACGCTGACAGAGGAGCTCGCCG
AGGCGCAGGCTGTGGCCGCCGAGCTGGCTGCGGCCAAGGCGGCGGCCGTG
GCGAGCGGCGAGGAGTCGGCAGGCAAGGTCCGGCGGCTCGTGACGCGGCT
CAAGAAGGAGCGCGAGGAGCACAAGAGCACACTGGACGCGCTCCGGCAGC
AGCTCGCCGCCGCGCAGGAGGCGGAGCAGACGGCGCGAGCGGCGGGCGAG
GTGGCGGCCGCCGCCGCCGCCGAGCGGGCGGCGGCGCTGGAGGCGGAGGT
CGGCGCGGTGCGGGCAGAGTCAGAGTGCACGGTGACGGGAGCCGGCGAGC
GCGTGGCGGAACTCTTGGCGCAGGCCGCGGAGCTGCGCAAAGAGGCCGCG
GCGCTGCGTGTGCGGCTAGCAGCGGCAGAGAGCGCCGGCGCCGAAGCGGC
CACCCGGGCGGAGGAGGTGGTGGCGATGGAGGCGCAGGTCGACGTGGCCA
ACGCTGAGGCGGAAAAGGCGGCGGCGGCGGCGGCGGCGGTGGCGGAGGCG
GCGCGGGTGGAGGTTGCCACCGCGCTGGCGGAGTGCGACAAAGCACGCGG
CGCCGCGGCGGCTGCTGAAACAGCGCTGGCAGAAGCCCGTCAAGATGCGG
CGATGGCGGCAGAGGCCGCCGGGGCGGCGGCGGCAGCGGCGGCGGCTGCG
GGCGAGGCGGCGCTTGCGGCGCAGACAGAAAAGCACCGGCGGGCGCTGGC
GGCGGCGGACGAAACGCGGGTGGAGTTGGACGGCAAGGTCAAGCGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5266:1415..3913-

>mRNA_P-wetherbeei_contig5266.3.1 ID=mRNA_P-wetherbeei_contig5266.3.1|Name=mRNA_P-wetherbeei_contig5266.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1845bp|location=Sequence derived from alignment at P-wetherbeei_contig5266:1415..3913- (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGGCGGCGGCGGCGGCCGAACACGAGGCATTAGAGGCGCTCCGCGG
CGAATTGGCCGCACTCGCCGCCACCAACGCCGAGCTTTCGAAGCGCCTTG
AGGAGGCAAAAAGCGCGGCGGCGGCGGCGGTGGCCGCGGTCGAACACCAA
GGGGCGACCGAGACGGCTGCCGCTGAGGGCGCGGGCGCCGCAGCGGAAGA
CGGAAGCTCCGCTGCCGCCGCCGCGGATGCCGCAGCTCTTCTGGCCGGAA
AAGCGGCGGCCCTCGAGGCGTCGCGAGACGAAGCCAACGTGCGGTTGGGG
GATTTGGCGGCGGCCAAAGCAGAGGCGGATGCGCAGCGGGCCCGAGCGGC
GGAGGCTGAGGCACAGCTTTCGAGGGCGGTGAAAGAGCTTGCGTCATCGA
GACGAGATGCCCTTGCGACTTCGGCGGCTTTGGCGGCGAAGGCGGGCTCG
TTGGAAGAGAGAGAGGAGGCATCGGAGACGAAGGCGATCGCGCTGACAAC
GGTGTACGAGGCAGCGCAGGCGAATGCCGCGATAAACACAGGGGCGACCG
TTGCGGAACCGAGTGGCTCCGCATCAGCTGCTGCAGGGAAGGCGACAAAA
GAAGCTGCCGAAACGGCCGCTGCAGAAATGGCGGATGCTCAGGAGAGAGC
CGACTCTCTGGCCGTGGCCCTAGAAGCGGCGAAGGCGGAGAGCCGCAGCT
CTGCGGCGGCGGCGACGGCGGCGCTGGACTCGCTGGAGCGCGAACGCGTC
GCTGCCGAGGCGGCTGCGGCCGAAGCAGCCAAGGCGGCGGCGGTGCAGCT
TCGTGATGCAGAAGTTGTCGCAGCGGTAGCGAAGGAAGAGGCGGCGGCGG
CGACGCGGCGGGTCAAAGAGCTGGAGGCTGAGTGCCGCGCGGCGCAGGAT
GGCATGGTGACGGCGGCGGACGAAGCGGCAGCGGCGGCGGAACGTGTCGC
AGCCCTGGAGGTGGCGCTGGCCGAGGCGCGCGCCGGAAACGCAGAGGGTG
CAATCCTGGCAGCGACTACCGCTAAGGAGACGGAAGCCGCTGCGGCGGCA
GCGACCGCGGCGGTGGAGGCGGCGACAGCCACGGCAACTGCCACTGAAGA
ACTGGCGACGGCGCTGGCAGCGCAGGTTGCCGCGTTGACGGAAGAGCTCG
CCGGGGCGCAGGCTTCTGGTGCAGAGCTTTCAGCGGCCAACGCGGCCGCG
GCTTTGGAGGCGGAAGCGGTGGCGGTGCAGCTTCGCGACGCTGAGGCGGC
GGCGGTGGCGGCGAAGGAGGAGGCAGCGGCGGCGACGCGGCGGGCGGAGG
AGCTAGATGTCGAGTACCAGGCGGTCCGCGAATACGCAGCGACGGCGGCC
GCCGAAGCGGCAGCGACTGCGGAACGCGTGGCGGCGCTTGAGGTGTCCTT
GATCGAGGCGCGCGCCGGTAACGCGGAAGCTGCCAGTGCAGCGGCGGCGA
CAGCCGCCTTAACAAGGGAAGCAGCAGCGGCGACGGCGACGGCAGAGGCT
GTGGCAGCCACGGCAACCGCAGCCGAAGAGCGGGCAACGGAACTGGCGGC
GCAGGCGGAAAAGGCGGCGGCGGCGGCGGCGGCGGTGGCGGAGGCGGCGC
GGGTGGAGGTTGCCACCGCGCTGGCGGAGTGCGACAAAGCACGCGGCGCC
GCGGCGGCTGCTGAAACAGCGCTGGCAGAAGCCCGTCAAGATGCGGCGAT
GGCGGCAGAGGCCGCCGGGGCGGCGGCGGCAGCGGCGGCGGCTGCGGGCG
AGGCGGCGCTTGCGGCGCAGACAGAAAAGCACCGGCGGGCGCTGGCGGCG
GCGGACGAAACGCGGGTGGAGTTGGACGGCAAGGTCAAGCGGCTG
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