prot_P-wetherbeei_contig5264.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig5264.1.2
Unique Name	prot_P-wetherbeei_contig5264.1.2
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	139

Homology

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A151RFW5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RFW5_CAJCA)

HSP 1 Score: 84.0 bits (206), Expect = 4.030e-17
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query:    8 VPRLDYLRQFCEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAKVTSRLWTR 107
            +P +DY+++FCE C   K  RTN    A+ RA   LELVH+DI GP+  +S +  R  IIF+DD  R  W+YF++  +E     K F    + T+ L+ +
Sbjct:   70 LPNMDYIKKFCEGCVFGKQARTNFQKKAEYRARRSLELVHTDICGPITSKSFSEKRYFIIFIDDYIRKTWVYFLKEKSEAFEAFKNFKAMVEKTTNLYIK 169

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A0V0I0V2_SOLCH (Putative retrovirus-related Pol polyprotein from transposon TNT 1-94-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0I0V2_SOLCH)

HSP 1 Score: 84.0 bits (206), Expect = 1.350e-16
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 0

Query:   18 CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAKVTSRLWTRV 108
            CE+C   K HR +      +RA S  ELVHSD++GP PV S+TGH+  + FVDD +RM WIYF++S +EV      F  + K       R+
Sbjct:   68 CESCRFAKHHRHSIGPRVNKRAESAFELVHSDVWGPCPVVSKTGHKYFVTFVDDFSRMTWIYFMKSRSEVFTHFGAFCAEVKTQFNASVRI 158

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438D334_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D334_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.340e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  425 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 516

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438DT29_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DT29_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.370e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  476 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 567

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438CP53_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CP53_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  412 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 503

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438FSA8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FSA8_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.510e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  337 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 428

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438GAQ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAQ9_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.540e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  396 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 487

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A5AWD0_VITVI (Uncharacterized protein n=3 Tax=Vitis vinifera TaxID=29760 RepID=A5AWD0_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.540e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  477 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 568

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BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438GAA6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=15 Tax=Vitis TaxID=3603 RepID=A0A438GAA6_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.540e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct:  416 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 507

[Close]

BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Match: A0A438G922_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G922_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0

Query:    9 PRLDYLRQF-CEACEMTKSHRTNTNTAAQQRAVSRLELVHSDIFGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAK 99
            P+ D L    CE+C   K HR++      +RA S  ELVHSD++GP PV S+TG R  + FVDD +RM WIYF+++ +EV      F  + K
Sbjct: 1672 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIK 1763

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5264.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A151RFW5_CAJCA	4.030e-17	39.00	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A0V0I0V2_SOLCH	1.350e-16	42.86	Putative retrovirus-related Pol polyprotein from t...	[more]
A0A438D334_VITVI	2.340e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438DT29_VITVI	2.370e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438CP53_VITVI	2.500e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438FSA8_VITVI	2.510e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438GAQ9_VITVI	2.540e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A5AWD0_VITVI	2.540e-15	43.48	Uncharacterized protein n=3 Tax=Vitis vinifera Tax...	[more]
A0A438GAA6_VITVI	2.540e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438G922_VITVI	2.620e-15	43.48	Retrovirus-related Pol polyprotein from transposon...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 32..113 e-value: 1.1E-8 score: 36.6
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 40..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5264	contig	P-wetherbeei_contig5264:2766..3182 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5264.1.2	mRNA_P-wetherbeei_contig5264.1.2	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig5264 545..3266 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig5264.1.2 ID=prot_P-wetherbeei_contig5264.1.2|Name=mRNA_P-wetherbeei_contig5264.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MADSSTRVPRLDYLRQFCEACEMTKSHRTNTNTAAQQRAVSRLELVHSDI
FGPLPVRSRTGHRDAIIFVDDSTRMRWIYFIRSTTEVLGCLKQFFVDAKV
TSRLWTRVQTPKFPCRMSGKRERAGIFSAVYAVNEWRG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf