mRNA_P-wetherbeei_contig5262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A8J9SFZ5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SFZ5_PHATR) HSP 1 Score: 90.5 bits (223), Expect = 3.700e-22 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
D EPVD FPDY++ PMD GT+R +L +Y+ P+ FARDMR ++NNCK+YNQHGSAIW + + M+ QF
Sbjct: 14 DIFLEPVDRNDFPDYMEIIDTPMDLGTVRSKLLSRKYQ--SPEQFARDMRKIWNNCKIYNQHGSAIWYVGDYMSKQF 88
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A836CMM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMM2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.740e-21 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
+ EPVD +MFP+Y+ PMD GT+R RL+ Y+RN PD FARD+RLV++NCKV+N+HGS+IW A+ +A F
Sbjct: 457 EIFMEPVDTRMFPNYLDIVDTPMDLGTVRTRLETKAYRRNWPDDFARDVRLVWHNCKVFNKHGSSIWYTADYLAKHF 533
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A1E7EUT7_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUT7_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.870e-20 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
EPV++ FPDY ++ PMD GT+R +L +Y+ P+ FARDMR ++NNCK+YN+HGSAIW +A+ M+ QF
Sbjct: 17 EPVNLDDFPDYEESIDIPMDLGTVRTKLLSKKYQM--PEQFARDMRKIWNNCKIYNRHGSAIWHVADYMSKQF 87
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S1BCQ2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCQ2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.370e-19 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 10 QEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
QEPVD++ FPDY+ PMD T+R RL +Y+ P+ FARDMR V+ NCKVYNQHGSAIW +A+ M+ QF
Sbjct: 484 QEPVDLQSFPDYLDYVETPMDLSTVRTRLANRKYQ--SPEQFARDMRKVWQNCKVYNQHGSAIWNLADFMSRQF 555
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S2EV94_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV94_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.890e-19 Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
EPVD + FPDY + PMD GT+R ++ +Y+ P++FARDMR ++NNCKVYNQHGSAIW +A+ M+ QF
Sbjct: 61 EPVDTEQFPDYEEYVDQPMDLGTVRDKIVRRKYQA--PENFARDMRRIWNNCKVYNQHGSAIWHVADYMSKQF 131
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A1Z5JSQ4_FISSO (Chromodomain-helicase-DNA-binding protein 7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSQ4_FISSO) HSP 1 Score: 90.1 bits (222), Expect = 2.580e-19 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
D EPVD + FPDY + +PMD GT+R +L +Y+ P+ FARDMR V+NNCK+YNQHGSAIW +A+ M+ F
Sbjct: 445 DIFLEPVDTEDFPDYEEVIDSPMDLGTVRSKLMSKKYQM--PEQFARDMRKVWNNCKIYNQHGSAIWHVADYMSKLF 519
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S3P5L3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5L3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 4.820e-19 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
D EPVD FPDY PMD GT+R +++ +Y+ P+ FARDMR ++NNCK+YNQHGSAIW +A+ M+ QF
Sbjct: 467 DIFLEPVDPDDFPDYDDVIDTPMDIGTVRTKMESKKYQA--PEQFARDMRKIWNNCKIYNQHGSAIWHVADYMSKQF 541
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 9.010e-19 Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
+PVD+ +P Y + PMD GTI+ +L W Y+RNDP F RD RLVF NCKV+N+ GSAIW IA+ + +F
Sbjct: 434 DPVDLDAYPSYEEKVDEPMDLGTIKGKLDNWEYRRNDPMGFLRDGRLVFTNCKVFNKFGSAIWYIADYLQAKF 506
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7R9W4F0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4F0_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.030e-18 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 10 QEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
QEPV FPDY + PMD GTIR ++ +Y+ P+ FARD+R V+NNCK+YNQHGS IW +A+ + QF
Sbjct: 49 QEPVSTTDFPDYEEYIDQPMDLGTIRTKVDNRKYQ--SPEQFARDVRKVWNNCKIYNQHGSQIWHVADFFSKQF 120
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S3V5T8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5T8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.290e-18 Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
EPVD+ F DY++ + MD TIR +L+ +Y+ P++FARDMR V+NNCKVYNQHGSAIW +A+ M++QF
Sbjct: 457 EPVDLNDFSDYMEYVDSAMDLSTIRTKLENRKYQ--GPENFARDMRKVWNNCKVYNQHGSAIWFVADYMSIQF 527 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5262.1.1 >prot_P-wetherbeei_contig5262.1.1 ID=prot_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp MFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNback to top mRNA from alignment at P-wetherbeei_contig5262:3244..3794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5262.1.1 ID=mRNA_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=551bp|location=Sequence derived from alignment at P-wetherbeei_contig5262:3244..3794- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5262:3244..3794- >mRNA_P-wetherbeei_contig5262.1.1 ID=mRNA_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig5262:3244..3794- (Phaeothamnion wetherbeei SAG_119_79)back to top |