mRNA_P-wetherbeei_contig5261.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5261.2.1
Unique NamemRNA_P-wetherbeei_contig5261.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A4R7DNN7_9GAMM (Uncharacterized protein DUF4282 n=1 Tax=Idiomarina sp. H2 TaxID=2183987 RepID=A0A4R7DNN7_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 7.280e-24
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAG-------GFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D+L+ +NM+ PK+ITF YW+LLL A + GI TM AG        FI GL+  AGG   AR+W EL++VLFK+NEALQ++RKK
Sbjct:    1 MKDVLFFNNMLTPKIITFVYWILLLAAVIGGISTMFAGYEGFTFGSFIMGLLAAAGGALGARIWCELLIVLFKMNEALQDLRKK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A2W4S5R9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4S5R9_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 8.850e-22
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 RDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTM-VAGGFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            RD+ + DNM+ PKVITF YW++LL + ++GIG     G F  GLMV+ GG   AR+W EL++VLFK+NEALQ++R++
Sbjct:    4 RDIFFFDNMVTPKVITFVYWLMLLGSVIAGIGVWRTLGSFTLGLMVLVGGAIGARIWCELLIVLFKMNEALQDLRRR 80          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: UPI002003C291 (DUF4282 domain-containing protein n=1 Tax=Idiomarina sp. ATCH4 TaxID=2914829 RepID=UPI002003C291)

HSP 1 Score: 89.4 bits (220), Expect = 9.880e-22
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAG-------GFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D L+ +NM+ PK+ITF YW+LLL A + GIGTM AG        F+ G+     G   AR+W EL++VLFK+NEALQ++RKK
Sbjct:    1 MKDALFFNNMLTPKIITFVYWILLLAAVIGGIGTMFAGFEGFTFSSFLIGIFYAVAGAVGARIWCELLIVLFKMNEALQDLRKK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: UPI0004ABDA77 (DUF4282 domain-containing protein n=1 Tax=Desulfonatronum thiodismutans TaxID=159290 RepID=UPI0004ABDA77)

HSP 1 Score: 88.6 bits (218), Expect = 1.990e-21
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTM-------VAGGFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M D+LY D M+ PK+IT  YW+LL VA  SG+G+M        AG F+ GL+   GG  AAR+W EL++VLFK+NEALQE+R+K
Sbjct:    1 MYDVLYFDKMLTPKIITLVYWLLLFVAVFSGLGSMFGGHEGFTAGKFLMGLVYAVGGAIAARIWCELMIVLFKMNEALQELRQK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A7W2NJC8_9GAMM (DUF4282 domain-containing protein n=2 Tax=unclassified Colwellia TaxID=196834 RepID=A0A7W2NJC8_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 3.070e-21
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAG-------GFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D+ + ++M+ PK+ITF YW+LLLVAAVSGI TM++G        FI+GL +  GG  AAR+W EL++VLFKIN  LQ+I  K
Sbjct:    1 MKDVFFFESMLTPKIITFVYWLLLLVAAVSGISTMLSGYGGFTFATFISGLFIAGGGAIAARIWCELMIVLFKINSNLQKISDK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A7Y4ZXM4_9PROT (DUF4282 domain-containing protein n=1 Tax=Methylotenera sp. TaxID=2051956 RepID=A0A7Y4ZXM4_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 8.090e-21
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAG-------GFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D+L+ D+M+ PK+ITF YW+LL  A ++G+ TM  G        F TGL+   GG  AAR+W EL++VLFK+NEALQ++R K
Sbjct:    1 MKDVLFFDSMLTPKIITFVYWLLLFAAVMAGLSTMFGGYGGFSIGNFFTGLLYSVGGAVAARIWCELLIVLFKMNEALQDLRHK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: F5J4D7_9GAMM (DUF4282 domain-containing protein n=6 Tax=Pseudoalteromonas TaxID=53246 RepID=F5J4D7_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 1.090e-20
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVA---GGFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D+ + D+M+ PK+ITF YW++L+   +SG+ TM A   GGFI+GL +I GG   AR+W EL++VLFKI+E LQ+I  K
Sbjct:    1 MKDIFFFDSMLTPKIITFVYWLILIGTLISGVTTMFAKYGGGFISGLAIIVGGAIGARIWCELLIVLFKIHENLQKIANK 80          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A3A6UM67_9GAMM (DUF4282 domain-containing protein n=1 Tax=Parashewanella spongiae TaxID=342950 RepID=A0A3A6UM67_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 4.420e-20
Identity = 41/80 (51.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVA---GGFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            MRD+L+ D+M+ PK+ITF YW++L+ + +SG+ TM +   GGFI+GL +I  G+  AR+W EL++VLFKI+E LQ+I  K
Sbjct:    1 MRDILFFDSMLTPKIITFVYWIMLIGSVISGLTTMFSSFGGGFISGLGIIIFGVIGARIWCELLIVLFKIHENLQKIADK 80          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: Q5QW76_IDILO (Uncharacterized conserved membrane protein n=3 Tax=Idiomarinaceae TaxID=267893 RepID=Q5QW76_IDILO)

HSP 1 Score: 84.7 bits (208), Expect = 6.630e-20
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAG-------GFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            M+D+L+ +NM+ PK+ITF YW+LLL A V G+ TM  G        F+ G+     G   AR+W EL++VLFK+NEALQ++RKK
Sbjct:    1 MKDVLFFNNMLTPKIITFVYWILLLAAVVGGVSTMFMGYEGFTFGNFLKGIFYALAGGVGARIWCELLIVLFKMNEALQDLRKK 84          
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Match: A0A7V7X0A0_9BURK (DUF4282 domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7V7X0A0_9BURK)

HSP 1 Score: 84.7 bits (208), Expect = 6.630e-20
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVA------GGFITGLMVIAGGMFAARVWSELIVVLFKINEALQEIRKK 231
            MR LL+ D M+ P++ITF YW+LL VAAV GIG M +       GF TGL +I GG   AR+W EL++VLFKINE  Q++ ++
Sbjct:    1 MRSLLFFDAMVTPRIITFVYWLLLFVAAVGGIGAMFSFGRMSFSGFATGLAIIVGGALGARIWCELLMVLFKINEHTQKMAER 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5261.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R7DNN7_9GAMM7.280e-2454.76Uncharacterized protein DUF4282 n=1 Tax=Idiomarina... [more]
A0A2W4S5R9_9PROT8.850e-2253.25Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
UPI002003C2919.880e-2251.19DUF4282 domain-containing protein n=1 Tax=Idiomari... [more]
UPI0004ABDA771.990e-2153.57DUF4282 domain-containing protein n=1 Tax=Desulfon... [more]
A0A7W2NJC8_9GAMM3.070e-2153.57DUF4282 domain-containing protein n=2 Tax=unclassi... [more]
A0A7Y4ZXM4_9PROT8.090e-2150.00DUF4282 domain-containing protein n=1 Tax=Methylot... [more]
F5J4D7_9GAMM1.090e-2051.25DUF4282 domain-containing protein n=6 Tax=Pseudoal... [more]
A0A3A6UM67_9GAMM4.420e-2051.25DUF4282 domain-containing protein n=1 Tax=Parashew... [more]
Q5QW76_IDILO6.630e-2048.81Uncharacterized conserved membrane protein n=3 Tax... [more]
A0A7V7X0A0_9BURK6.630e-2051.81DUF4282 domain-containing protein n=1 Tax=Burkhold... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5261contigP-wetherbeei_contig5261:792..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog722419.PH505_aw00480
PFAMsDUF4282
Model size234
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.78e-21
EggNOG OGs2DMI0@1|root,32UH1@2|Bacteria,1N2GP@1224|Proteobacteria,1S8S7@1236|Gammaproteobacteria,2Q3GF@267888|Pseudoalteromonadaceae
DescriptionDomain of unknown function (DUF4282)
Cds size234
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.140206-CDS-P-wetherbeei_contig5261:791..10251683186788.140206-CDS-P-wetherbeei_contig5261:791..1025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5261 792..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5261.2.1prot_P-wetherbeei_contig5261.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5261 792..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5261.2.1

>prot_P-wetherbeei_contig5261.2.1 ID=prot_P-wetherbeei_contig5261.2.1|Name=mRNA_P-wetherbeei_contig5261.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MRDLLYLDNMIVPKVITFFYWVLLLVAAVSGIGTMVAGGFITGLMVIAGG
MFAARVWSELIVVLFKINEALQEIRKK*
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mRNA from alignment at P-wetherbeei_contig5261:792..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5261.2.1 ID=mRNA_P-wetherbeei_contig5261.2.1|Name=mRNA_P-wetherbeei_contig5261.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig5261:792..1025+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGACTTGCTGTATCTGGACAATATGATTGTTCCTAAAGTCATTAC CTTTTTCTACTGGGTATTGCTTCTGGTAGCCGCTGTTTCGGGCATTGGGA CCATGGTGGCGGGCGGTTTTATCACGGGCCTGATGGTCATTGCGGGCGGC ATGTTCGCCGCCCGGGTGTGGTCAGAATTGATTGTCGTACTGTTCAAAAT CAACGAAGCCTTGCAGGAAATCCGGAAAAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5261:792..1025+

>mRNA_P-wetherbeei_contig5261.2.1 ID=mRNA_P-wetherbeei_contig5261.2.1|Name=mRNA_P-wetherbeei_contig5261.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig5261:792..1025+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGACTTGCTGTATCTGGACAATATGATTGTTCCTAAAGTCATTAC
CTTTTTCTACTGGGTATTGCTTCTGGTAGCCGCTGTTTCGGGCATTGGGA
CCATGGTGGCGGGCGGTTTTATCACGGGCCTGATGGTCATTGCGGGCGGC
ATGTTCGCCGCCCGGGTGTGGTCAGAATTGATTGTCGTACTGTTCAAAAT
CAACGAAGCCTTGCAGGAAATCCGGAAAAAATAA
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