mRNA_P-wetherbeei_contig12359.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12359.1.1
Unique NamemRNA_P-wetherbeei_contig12359.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A7K1B8Q6_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B8Q6_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.680e-41
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  193 GPVRKAVXXXXXXXXXXMLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            GPVRK+V          MLAPDDVEADLDTILKDRLVAA+DE +EDEEEPE+R E+ DRLQPKRADEQLCPSCFLLVRQ+AP CPVGDD+CPLFS
Sbjct:   72 GPVRKSVASEDEDEDEDMLAPDDVEADLDTILKDRLVAADDEGDEDEEEPEERGESADRLQPKRADEQLCPSCFLLVRQSAPMCPVGDDDCPLFS 166          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A539DQG9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DQG9_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 2.060e-38
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            M+APDDVEADLDTILKDRLVAAEDEVNEDEEE E+R E  DRLQPKRADEQLCP CFLLVRQTAP CPVGDD+CPLFS
Sbjct:   82 MIAPDDVEADLDTILKDRLVAAEDEVNEDEEEVEERGEQADRLQPKRADEQLCPRCFLLVRQTAPMCPVGDDDCPLFS 159          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A3C2B045_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B045_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 3.390e-38
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 1
Query:  121 DDEFAVIGEEFEADEXXXXXXD-TDGPVRKAVXXXXXXXXXXMLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLF 474
            DDEF  + +EF  D  XXX  + T GPVR++V          +LAPDDVEADLDTILKDRLVA +++   +++EPE+R E+ DRLQPKRADEQLCPSCFLLVRQ+APGCPVGDDECPLF
Sbjct:   46 DDEFGGLDDEFTDDTDXXXESEGTAGPVRRSVSEDEDEDEE-LLAPDDVEADLDTILKDRLVAVDEDDENEDDEPEERGESADRLQPKRADEQLCPSCFLLVRQSAPGCPVGDDECPLF 163          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A6I3WSW6_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WSW6_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 1.230e-35
Identity = 83/120 (69.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  121 DDEFAVIGEEF-EADEXXXXXXDTDGPVRKAVXXXXXXXXXXMLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            DDEF+ I +EF +A        DTDGPVR+AV XXXXXXXX MLAPDDVEADLDTILKDRLV+A+D      E PEDR+E  DRLQPKR+DE+LCPSCFLLVR  AP CP+GDD+CPL S
Sbjct:   42 DDEFSGIDDEFVDAAGAEEAEDDTDGPVRRAVAXXXXXXXX-MLAPDDVEADLDTILKDRLVSADDSEXXXXE-PEDRSEASDRLQPKRSDERLCPSCFLLVRNGAPTCPIGDDDCPLLS 159          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A3C1L5C4_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L5C4_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 6.080e-33
Identity = 71/119 (59.66%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  124 DEFAVIGEEFEADEXXXXXXDTDGPVRKAVXXXXXXXXXX-MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            DEF  +     A  X     DT GPVR++V        XX ++APDDVEADLDTILKDRLVAA+        EPE++ E  DRLQPKRADEQLCP+CFLLVRQ AP CP+GDDECP+FS
Sbjct:   44 DEFVPLDXXXXAAXXDEDDDDTSGPVRRSVPAGEDEDEXXXIIAPDDVEADLDTILKDRLVAADXXXXXXXXEPEEKGEAADRLQPKRADEQLCPTCFLLVRQGAPVCPIGDDECPIFS 162          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A7W1CMT1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CMT1_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 1.070e-28
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            +L+PDDVEADLD ILKDR+V AE+E      EP++R +  +RLQPKRADEQLCP+CFLLVR  APGCPVGDD+CP+F 
Sbjct:   87 LLSPDDVEADLDRILKDRMVTAEEEXXXXXXEPDERGDPAERLQPKRADEQLCPNCFLLVRANAPGCPVGDDDCPIFG 164          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A6I3F639_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3F639_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 8.840e-28
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            M+APDDVEADLD+ILK+R+V          E PE+R E  DRLQPKRADE+LCPSCFLLVRQ APGCPVGDDECPLFS
Sbjct:   89 MVAPDDVEADLDSILKERMVXXXXXXXXXXE-PEERGEAADRLQPKRADERLCPSCFLLVRQGAPGCPVGDDECPLFS 165          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A7W0R0Q6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R0Q6_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 9.120e-28
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            +L+PDDVEADLD ILKDR+V  E+E       P++R +TGDRLQPKRADEQLCP+CFLLVR  AP CPVGDD CP+F 
Sbjct:  102 LLSPDDVEADLDRILKDRMVTDEEEXXXXXXXPDERGDTGDRLQPKRADEQLCPTCFLLVRAVAPACPVGDDACPIFG 179          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A6I2WNJ5_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2WNJ5_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 9.760e-28
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAEDEVNEDEEEPEDRTETG---DRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            ++APDDVEADLDTILKDRLV AE E NEDEE+  +  E G   DRLQPKRADEQLC  CFL+VR+ AP CPVGDD CPLFS
Sbjct:   77 VVAPDDVEADLDTILKDRLVTAE-ESNEDEEDEAEADERGADSDRLQPKRADEQLCSRCFLIVRRNAPNCPVGDDACPLFS 156          
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Match: A0A7V9DJN1_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DJN1_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 7.630e-25
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  244 MLAPDDVEADLDTILKDRLVAAE--DEVNEDEEE---PEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPVGDDECPLFS 477
            MLAPDDVEADLD ILKDR+V ++  DE ++D+ E   P DR E   RLQPKR+DEQLC +CFLLVR +AP CPVGDD+CP+FS
Sbjct:   90 MLAPDDVEADLDRILKDRMVTSDEQDEADDDDVEDATPGDRGEDAGRLQPKRSDEQLCGTCFLLVRASAPLCPVGDDDCPIFS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B8Q6_9ACTN1.680e-4177.89Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A539DQG9_9ACTN2.060e-3888.46Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2B045_9ACTN3.390e-3864.71Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3WSW6_9ACTN1.230e-3569.17Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A3C1L5C4_9ACTN6.080e-3359.66Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A7W1CMT1_9ACTN1.070e-2867.95Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6I3F639_9ACTN8.840e-2873.08Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7W0R0Q6_9ACTN9.120e-2867.95Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6I2WNJ5_9ACTN9.760e-2872.84Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7V9DJN1_9ACTN7.630e-2566.27Uncharacterized protein n=2 Tax=Acidimicrobiia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12359contigP-wetherbeei_contig12359:411..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_25940
Model size480
Max annot lvl84992|Acidimicrobiia
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.04e-17
EggNOG OGs2DDS5@1|root,2ZJ1Y@2|Bacteria,2HDMP@201174|Actinobacteria,4CP3T@84992|Acidimicrobiia
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185946.5613458-CDS-P-wetherbeei_contig12359:410..8901683185946.5613458-CDS-P-wetherbeei_contig12359:410..890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12359 411..890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12359.1.1prot_P-wetherbeei_contig12359.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12359 411..890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12359.1.1

>prot_P-wetherbeei_contig12359.1.1 ID=prot_P-wetherbeei_contig12359.1.1|Name=mRNA_P-wetherbeei_contig12359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MADEDEEVLEPDEEFEVEEDVEAEPEELEDGELDEDALDEDDEFAVIGEE
FEADEEEEADDDTDGPVRKAVVAADEDDDDDMLAPDDVEADLDTILKDRL
VAAEDEVNEDEEEPEDRTETGDRLQPKRADEQLCPSCFLLVRQTAPGCPV
GDDECPLFS*
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mRNA from alignment at P-wetherbeei_contig12359:411..890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12359.1.1 ID=mRNA_P-wetherbeei_contig12359.1.1|Name=mRNA_P-wetherbeei_contig12359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12359:411..890+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGACGAAGACGAAGAGGTGCTGGAGCCCGACGAGGAGTTCGAGGT CGAAGAAGACGTCGAGGCCGAGCCGGAGGAGCTCGAAGACGGCGAGCTCG ACGAGGACGCGCTGGACGAGGACGACGAGTTCGCGGTCATCGGCGAGGAG TTCGAGGCGGACGAGGAGGAAGAGGCCGACGACGACACCGACGGCCCCGT CCGCAAGGCGGTCGTCGCTGCCGACGAGGACGACGACGACGACATGCTCG CCCCCGACGACGTCGAGGCCGACCTGGACACGATCCTCAAGGACCGCCTC GTCGCCGCCGAGGACGAGGTCAACGAGGACGAGGAAGAGCCGGAGGACCG CACCGAGACCGGCGATCGCCTGCAACCCAAGCGCGCCGACGAGCAGCTCT GTCCGAGCTGCTTCCTCCTGGTGCGCCAGACCGCACCCGGGTGCCCCGTC GGCGACGACGAGTGCCCGTTGTTCAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12359:411..890+

>mRNA_P-wetherbeei_contig12359.1.1 ID=mRNA_P-wetherbeei_contig12359.1.1|Name=mRNA_P-wetherbeei_contig12359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12359:411..890+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGACGAAGACGAAGAGGTGCTGGAGCCCGACGAGGAGTTCGAGGT
CGAAGAAGACGTCGAGGCCGAGCCGGAGGAGCTCGAAGACGGCGAGCTCG
ACGAGGACGCGCTGGACGAGGACGACGAGTTCGCGGTCATCGGCGAGGAG
TTCGAGGCGGACGAGGAGGAAGAGGCCGACGACGACACCGACGGCCCCGT
CCGCAAGGCGGTCGTCGCTGCCGACGAGGACGACGACGACGACATGCTCG
CCCCCGACGACGTCGAGGCCGACCTGGACACGATCCTCAAGGACCGCCTC
GTCGCCGCCGAGGACGAGGTCAACGAGGACGAGGAAGAGCCGGAGGACCG
CACCGAGACCGGCGATCGCCTGCAACCCAAGCGCGCCGACGAGCAGCTCT
GTCCGAGCTGCTTCCTCCTGGTGCGCCAGACCGCACCCGGGTGCCCCGTC
GGCGACGACGAGTGCCCGTTGTTCAGCTGA
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