mRNA_P-wetherbeei_contig526.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig526.3.2
Unique NamemRNA_P-wetherbeei_contig526.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig526.3.2 vs. uniprot
Match: A0A250X653_9CHLO (ATPase_2 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X653_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 4.650e-8
Identity = 43/166 (25.90%), Postives = 76/166 (45.78%), Query Frame = 2 
Query:  446 SVLFPTHGPEQEFSVGQAIQAYGQALEAWE---------IARRAEMVVKDCGGQRGLSSTLTNFWSGQSPTRLTSVLSSKFSVKFIQERPCYALFANGASGFFAIWRLNDATGKETWQAEVLGTFPEGEAREFLSLRLENLKTKITVSDEDWRRVYEMCDGNAKAL 916
            S++       +E  +   I+A+   L+AWE         I RR  +V+ +     G        W+   P  + ++L  +F V   +E+    +F   +   +  W L++A   E W   ++G F + EA+ F    L+  +  +TV+DE W ++YE+C GNA  L
Sbjct:  147 SIMSEDPAKNEEPDMNALIKAFKLLLDAWEKAIVTKSGEIMRRPVIVIDEANVMMG--------WNKNYPEDMGTLL--RFFVSITKEQKRSHVFLVTSEYGYQTW-LSEAIASEFWAPRIIGDFTKSEAKSFFEFELQRRRKVVTVTDEIWSQIYEVCGGNAGTL 301
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BLAST of mRNA_P-wetherbeei_contig526.3.2 vs. uniprot
Match: A0A250WRU8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WRU8_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-6
Identity = 38/134 (28.36%), Postives = 63/134 (47.01%), Query Frame = 2 
Query:  533 EIARRAEMVVKDCGGQRGLSSTLTNFWSGQSPTRLTSVLSSKFSVKFIQERPCYALFANGASGFFAIWRLNDATGKETWQAEVLGTFPEGEAREFLSLRLENLKTKITVSDEDWRRVYEMCDGNAKALRRAALD 934
            EI RR  +V+ +     G        W+   P  + ++L  +F V   +E+    +F   +   +  W L+ A   E W   ++G F + EA+ F    LE  +  +TV+DE W ++YE+C GNA  L   A +
Sbjct:    9 EIMRRPVIVIDEANVMMG--------WNKNYPEDMGTLL--RFFVSITKEQKRSHVFLVTSEFGYQTW-LSAAIASEFWAPRIIGDFTKSEAKSFFEFELERRRKVVTVTDEIWSQIYEVCGGNAGTLVNLAAE 131
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BLAST of mRNA_P-wetherbeei_contig526.3.2 vs. uniprot
Match: A0A250XST9_9CHLO (ATPase_2 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XST9_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 2.480e-6
Identity = 40/167 (23.95%), Postives = 75/167 (44.91%), Query Frame = 2 
Query:  476 QEFSVGQAIQAYGQALEAWE--------------IARRAEMVVKDCGGQRGLSSTLTNFWSGQSPTRLTSVLSSKFSVKFIQERPCYALFANGASGFFAIWRLNDATGKETWQAEVLGTFPEGEAREFLSLRLENLKTKITVSDEDWRRVYEMCDGNAKALRRAALD 934
            +E  +   ++A+   L+AWE              I RR  +V+ +     G        W+      + +++  +F V   +E+    +F   +   +  W L++A   E W+  ++G F + EA+ F    L+  +  +TV+DE W ++YE+C GNA  L   A +
Sbjct:  183 KELDMNVLMEAFQLLLDAWEKEIIKESRGIDPGEIMRRPVIVIDEANVMMG--------WNKDYAKDMGTLI--RFFVSITKEKKRSHVFLVTSEYGYQTW-LSEAIASEFWKPRIIGDFTKSEAKSFFEFELKRRRKVVTVTDEIWSQIYEVCGGNAGTLVNLAYE 338
[Close]
BLAST of mRNA_P-wetherbeei_contig526.3.2 vs. uniprot
Match: A0A250XQX4_9CHLO (ATPase_2 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQX4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 6.350e-5
Identity = 42/170 (24.71%), Postives = 73/170 (42.94%), Query Frame = 2 
Query:  446 SVLFPTHGPEQEFSVGQAIQAYGQALEAWEIARRAEMVVKDCGGQRGLSSTLTNF-------------WSGQSPTRLTSVLSSKFSVKFIQERPCYALFANGASGFFAIWRLNDATGKETWQAEVLGTFPEGEAREFLSLRLENLKTKITVSDEDWRRVYEMCDGNAKAL 916
            S++       +E  +   I+A+   L+AWE A    +V K  G   G    +                W+      + ++L  +F V   +E+    +F   +   +  W L+ A   E W   ++G F + EA+ F    L+  +  +TV+DE W ++YE+C GNA  L
Sbjct:  140 SIMSEDPAKNEEPDMNALIKAFKLLLDAWEKA----IVTKSGGIAPGTPGEIMRRPVIVIDEANVMMDWNKDYTKDMHTLL--RFFVSITKEQKRSHVFLVTSEYGYQTW-LSAAIASEFWAPRIIGDFTKSEAKRFFEFELQRRRKVVTVTDEIWSQIYEVCGGNAGTL 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig526.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A250X653_9CHLO4.650e-825.90ATPase_2 domain-containing protein n=1 Tax=Chlamyd... [more]
A0A250WRU8_9CHLO1.140e-628.36Uncharacterized protein (Fragment) n=1 Tax=Chlamyd... [more]
A0A250XST9_9CHLO2.480e-623.95ATPase_2 domain-containing protein n=1 Tax=Chlamyd... [more]
A0A250XQX4_9CHLO6.350e-524.71ATPase_2 domain-containing protein n=1 Tax=Chlamyd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig526contigP-wetherbeei_contig526:6676..9570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2420
Hectar predicted targeting categoryother localisation
Exons4
Cds size780
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig526.3.2prot_P-wetherbeei_contig526.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig526 8069..9167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.9316573-UTR-P-wetherbeei_contig526:6675..80681683186787.9316573-UTR-P-wetherbeei_contig526:6675..8068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig526 6676..8068 -
1683186787.965732-UTR-P-wetherbeei_contig526:9167..92261683186787.965732-UTR-P-wetherbeei_contig526:9167..9226Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig526 9168..9226 -
1683186787.9741728-UTR-P-wetherbeei_contig526:9382..95701683186787.9741728-UTR-P-wetherbeei_contig526:9382..9570Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig526 9383..9570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.9408057-CDS-P-wetherbeei_contig526:8068..82061683186787.9408057-CDS-P-wetherbeei_contig526:8068..8206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig526 8069..8206 -
1683186787.949169-CDS-P-wetherbeei_contig526:8362..85021683186787.949169-CDS-P-wetherbeei_contig526:8362..8502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig526 8363..8502 -
1683186787.9576-CDS-P-wetherbeei_contig526:8665..91671683186787.9576-CDS-P-wetherbeei_contig526:8665..9167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig526 8666..9167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig526.3.2

>prot_P-wetherbeei_contig526.3.2 ID=prot_P-wetherbeei_contig526.3.2|Name=mRNA_P-wetherbeei_contig526.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MESRSHRAASYSAAQMNWRCSENSARLNPKRSRRCSGRATTGNQHCGTST
CGNGGWVPTTLLREGLSVLFPTHGPEQEFSVGQAIQAYGQALEAWEIARR
AEMVVKDCGGQRGLSSTLTNFWSGQSPTRLTSVLSSKFSVKFIQERPCYA
LFANGASGFFAIWRLNDATGKETWQAEVLGTFPEGEAREFLSLRLENLKT
KITVSDEDWRRVYEMCDGNAKALRRAALDFHLTESKIWSSGGWRCERKPP
FTWRVLRLV*
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mRNA from alignment at P-wetherbeei_contig526:6676..9570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig526.3.2 ID=mRNA_P-wetherbeei_contig526.3.2|Name=mRNA_P-wetherbeei_contig526.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2895bp|location=Sequence derived from alignment at P-wetherbeei_contig526:6676..9570- (Phaeothamnion wetherbeei SAG_119_79)
TAGACACCTCCTTCCCCATCCAATCCTTAAAAGCTTAGAGAGCTCTTCCC
GTTCATATTAATCGACGGAATGAAGCTCGCGAGCCGCATAAAAGTGGCGA
AAATATTCGTCATCTCTTTCGGCAACCCTTCCATTGCCCTCCACTGGTCC
AGAGCACGAGTTGGATGCTCACCACATTAGTAGCCGTGGTAAGAAAGCAA
AGCTTTAGATCATTCTCTGTAGGCGACATGTGTCAAGTTTTATGTGCCTC
TTTTTGTCTCACGGTAACGAACAAGGAACCTCCCTAGCTATCCTGGCGAG
CTTCCAACGATTTTCCTTCAAATACTTCTTATGCAACCTTGCAGTCTTTC
CTTCAGCGCAAGACACTTGGCAGCGGGAGTGGACGCGGTCGTCGACGATT
CAAATGGAGTCACGATCACACCGAGCAGCGAGCTATTCGGCCGCTCAGAT
GAACTGGCGCTGCTCGGAAAACTCTGCGAGGCTCAACCCGAAAAGGTCAC
GGCGGTGCTCTGGCCGAGCAACTACGGGAAACCAGCACTGCGGCACGAGT
ACATGCGGCAATGGCGGCTGGGTTCCGACGACGCTTCTCCGAGAGGGATT
GTCGGTCCTCTTCCCGACCCACGGGCCTGAGCAGGAATTCAGCGTGGGGC
AGGCGATTCAAGCCTACGGGCAAGCTCTCGAGGCGTGGGAGATCGCTCGC
CGCGCAGAAATGGTTGTGAAGGACTGCGGCGGGCAACGTGGATTGTCGTC
TACGTTAACAAATTTCTGGAGTGGCCAGAGTCCGACTCGGCTGACCAGCG
TGCTCTCCTCAAAATTTTCCGTCAAATTCATTCAGGAGCGCCCCTGCTAC
GCGCTGTTCGCCAACGGGGCCTCCGGTTTCTTCGCTATATGGCGGCTGAA
CGATGGTGCGTTGCGACGCCGGGTGGAGTGACCGGGCGTTCAGCGCGCCT
GCTTTAGCAACATTTATAGACACACCGAGTGCTGCGTTCTGGCTCTCCTT
TGCTGCTTTGTCGCGCCTTAGTTACTTTGCAATGTTTGGCCTGATTCGCA
CGCTCTGCTCCGGTGCAGCGACTGGGAAGGAAACCTGGCAGGCCGAAGTC
CTGGGCACTTTTCCGGAGGGCGAAGCCAGGGAGTTTCTGTCGTTGCGGCT
GGAGAATCTGAAAACAAAGATAACCGTGTCGGACGAGGACTGGCGCCGAG
TGTACGAGGTGAGGGAGAATCCTGAGCATCATTTCAGCGATACGTACAAA
GCTGTCCTATGTTGGTTGCGGGCGGCTGGGATCAATTGCGTGGGCTCGCT
GGAGCTTTGGGTCAGCGACATTCTGACAGCTCACCCTGCCTTTTGTGTTT
CTTCGTACCTTCAGATGTGCGACGGGAACGCCAAAGCGCTGCGACGCGCC
GCTCTTGACTTCCACCTCACCGAAAGTAAAATCTGGTCATCTGGTGGGTG
GCGCTGTGAGCGAAAGCCCCCATTTACCTGGCGGGTTCTCCGGTTGGTAT
AATTGCCTCTTGTGTGAGAGGGCTTTGCGTGGGGAGGGGTCAACTGGCCT
TTCTCCACCCCAGACAAAAATCGCCGCCGAATGAATTGGTGTGCACGTGC
GTCCAAGTGGAATCATGCACGTGTCAGCGGAGTCCGCCTGCGGCCTCAAA
TAAAGGCTCATCGTGATCGCCTCAGTCGCTTCGTCCGTACTGGATATCGC
TCGTGTAACCCTGAAAAGACCAGAACTTTTCCCTGGTCGATCGTGTAAGG
GTGGGTGACAACGGCTGGCGGCCGCCCAGTTTGCAGATGCCGCTTTGCTC
CTTTGGACAGCTCCCTGCCAACGCCGTCACGCAGGAGCGGGTGGAGATGC
ATCTCGACCACCGCAGCAGGGCGGCCGTCGCTATTGGAAAGGACGAACAG
GTGCTAGCGGGGAGGCGCGTCCTGCTTGCCCTTTTGGAGGCGAACCGGCT
CAGCCTCTGCCCCTTCAGCGAATGGGCGCGCGACATCCCGTGGTACAATT
GCAGCCCCGCGCGGCGCGCCTTCGTAACAACACCGACGATCATGCAGCTG
CGTCACATGCGTGAGCTGCGCGCGAAGTTTGAAGCCACGCTGGAGCGATG
GTAGCAGGTGAGCAGGAGGGGGCAGTGAAATTTGAGCTGCAGTAATATAA
ACTAGCCGCATTGTTCATTTGATTACCATCTTGCTTGAACTGGACTTTCG
GGTAACCAGAAAAAGTAAGCGAGGTGAGGGAACGAAGAGGTCCGCTACAA
GAGTGGTCGCGCCAAGGAGGTTGCGCTAGTGCCCATATCCCTTGTCTCCA
GGCGCGGCTCTGGCGAGTCTATGCAGGCGGCAGCGGTTAGCGGCAGCAGC
AACCCGTTCCGGCCCGCCGCAACGCCGCAACGGGAGGGCGCGGGGAGGAA
GCATCAGCGGTGGAAAAGTGTGCCGTAATCTCACGGTGGTCTGTACTCTG
GTCTGCACCGAGTGCCGTGCAGGCTGTTCTTCTGAATCGAATATTTCTGG
AAACTGGTTCCGTTCATCTGTCTTCGGTCTTCTTGAGTTGCTGTTTTTGT
CCGCTTTTCTGGGTTCAATGTTGCCTCCTGGCTGTCATTTTTGATTTCCC
TCAAACGATTTTCTTTAGGAAGTATGGAAGGGACGCGTCTTCTTCAATCC
TCCGTCCGCTGCTGCTACTGCTGCTCCCGCCAGCGCAGCCGCCGTCCCTG
CTGCCGTCACCACCGCGCCGCTCCAGCCACCATGTTCGAAACGCGTGCCA
TCTTGAAGACTCACCTTGAAAGTAGAAAGAGGAGGAGGAGTGCGATAATG
ATCCAATAGAGGTTTTCAATCTAATAAAGGTTTTCAATGTGTACTTGATG
AGCACAATGAGAATTCCCGCTGCCGTCGTCGCTGTCGCTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig526:6676..9570-

>mRNA_P-wetherbeei_contig526.3.2 ID=mRNA_P-wetherbeei_contig526.3.2|Name=mRNA_P-wetherbeei_contig526.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig526:6676..9570- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTCACGATCACACCGAGCAGCGAGCTATTCGGCCGCTCAGATGAA
CTGGCGCTGCTCGGAAAACTCTGCGAGGCTCAACCCGAAAAGGTCACGGC
GGTGCTCTGGCCGAGCAACTACGGGAAACCAGCACTGCGGCACGAGTACA
TGCGGCAATGGCGGCTGGGTTCCGACGACGCTTCTCCGAGAGGGATTGTC
GGTCCTCTTCCCGACCCACGGGCCTGAGCAGGAATTCAGCGTGGGGCAGG
CGATTCAAGCCTACGGGCAAGCTCTCGAGGCGTGGGAGATCGCTCGCCGC
GCAGAAATGGTTGTGAAGGACTGCGGCGGGCAACGTGGATTGTCGTCTAC
GTTAACAAATTTCTGGAGTGGCCAGAGTCCGACTCGGCTGACCAGCGTGC
TCTCCTCAAAATTTTCCGTCAAATTCATTCAGGAGCGCCCCTGCTACGCG
CTGTTCGCCAACGGGGCCTCCGGTTTCTTCGCTATATGGCGGCTGAACGA
TGCGACTGGGAAGGAAACCTGGCAGGCCGAAGTCCTGGGCACTTTTCCGG
AGGGCGAAGCCAGGGAGTTTCTGTCGTTGCGGCTGGAGAATCTGAAAACA
AAGATAACCGTGTCGGACGAGGACTGGCGCCGAGTGTACGAGATGTGCGA
CGGGAACGCCAAAGCGCTGCGACGCGCCGCTCTTGACTTCCACCTCACCG
AAAGTAAAATCTGGTCATCTGGTGGGTGGCGCTGTGAGCGAAAGCCCCCA
TTTACCTGGCGGGTTCTCCGGTTGGTATAA
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