mRNA_P-wetherbeei_contig5259.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5259.1.1
Unique NamemRNA_P-wetherbeei_contig5259.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5259contigP-wetherbeei_contig5259:793..2972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1122214.AQWH01000002_gene4322
PFAMsCupin_2
Model size1146
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.26e-05
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1RE65@1224|Proteobacteria,2U8YB@28211|Alphaproteobacteria
DescriptionAraC-like ligand binding domain
Cds size783
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.5451875-UTR-P-wetherbeei_contig5259:792..11531683186787.5451875-UTR-P-wetherbeei_contig5259:792..1153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5259 793..1153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.5568075-CDS-P-wetherbeei_contig5259:1153..14451683186787.5568075-CDS-P-wetherbeei_contig5259:1153..1445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5259 1154..1445 -
1683186787.5669923-CDS-P-wetherbeei_contig5259:1733..19021683186787.5669923-CDS-P-wetherbeei_contig5259:1733..1902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5259 1734..1902 -
1683186787.577507-CDS-P-wetherbeei_contig5259:2189..24251683186787.577507-CDS-P-wetherbeei_contig5259:2189..2425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5259 2190..2425 -
1683186787.588146-CDS-P-wetherbeei_contig5259:2886..29721683186787.588146-CDS-P-wetherbeei_contig5259:2886..2972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5259 2887..2972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5259.1.1prot_P-wetherbeei_contig5259.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5259 1154..2972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5259.1.1

>prot_P-wetherbeei_contig5259.1.1 ID=prot_P-wetherbeei_contig5259.1.1|Name=mRNA_P-wetherbeei_contig5259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp
AFGGVWAYRHAQDVSKRRKLERARRSSHRPKRSLGELAEFDAGQRSSARV
LSSPRLVPSIGTSLVHLTLPRGTRTHGDLCFLGVGADGGAGAGCNTFYVL
SGSGMALANGSEVPVDPGDVLIFRPGSAFYVANTGWRGQPMALLWLAEPA
APQALLARGRLVESYDDGRGYAFRAARAVASGLSSVAVTGTAAASSIMSA
PRSRSAVPDEGGGRGGGDGGGGDGGNGLSGDNGGSGNGGGGGGGSAKAHE
AAAAGTWRGV*
back to top

mRNA from alignment at P-wetherbeei_contig5259:793..2972-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5259.1.1 ID=mRNA_P-wetherbeei_contig5259.1.1|Name=mRNA_P-wetherbeei_contig5259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2180bp|location=Sequence derived from alignment at P-wetherbeei_contig5259:793..2972- (Phaeothamnion wetherbeei SAG_119_79)
GCTTTCGGAGGAGTATGGGCATACCGGCACGCCCAAGACGTGTCGAAGAG
GCGAAAATTGGAAAGAGCAAGGCGCAGCTCGCACAGGTGCCTTGCCCACG
CCGCCAAATTCCTTTCTTTCATTTTCACCCCTGAGGTCGAAACCACTTTA
TCGTTGATTCCCATCACCTGGCTTCATCGTTGGCTATGGAGAGTTGGTAG
TAAGTCAACCCAGATTCTTCGGGCTTCCATTTGGTTTTCGGCTTGCGCGT
CTGCATCGAAGAAAACGCCTGCAATTGCTTACTTCTCAGTGCAGCTCGTG
ACGACGCTTCCTTCCTTCGACTCGCACGGAGCGCACCGAAAGCCGGCTAT
TACTGCCACTGCTGCTGCCATCACCACAGGCACTGCCCGCCCACTGCGCT
GCCGCTGCCGCCACCACCGCCGCCACCACCACCGCCACCGTCGCTCGCCG
CCGCTCGCCGCCATTTCTGTCAACATTGACGCTCTGACACCGCCGCGCCG
CCCCTCCACGACCGCATTCTCTCGTCGACGCCACCGCCGCCGCCCAGACC
GAAGCGGTCCCTAGGCGAGCTCGCCGAGTTCGACGCCGGTCAGCGGTCGT
CGGCGCGCGTACTATCGTCGCCGCGCCTCGTCCCGTCCATCGGGACGAGC
CTGGTGCACCTGACGCTGCCGCGCGGCACGCGAACGCACGGCGACCTCTG
CTTCCTCGGCGTCGGCGCAGACGGCGGGGCGGGTGCCGGATGCAACACCT
TCTACGTACTGAGCGGCTCGGGAATGGCGCTCGGTGAGTAAACAGTGACG
GCGTGTCCTTTTTTCCCCTCTCCGGGGGTGTTCTAAAGATATCACAGGTC
GGCGTCGGAGAAAGGAGGGAAAATGAGGTCAGATTCCTGTCATTTATTTC
TGAAAACGAGAGCGGGGCGGCTTGGACGTGGCTTTGCCCGGAACCGCCAA
ATTCAGCAGAAGCGCCATTGCAAATCATCAATTATTCCATGCTGCCCTTC
TTTTAAACTGCTGACCACATTTGCCGCCTCGCACGACCGCAATCGGAATC
TGCTCCGCCTTACTGAACAGCGAACGGATCGGAGGTGCCGGTGGACCCGG
GGGATGTCCTCATCTTCCGGCCCGGCTCGGCCTTCTACGTGGCCAACACG
GGGTGGCGCGGCCAGCCCATGGCGCTACTGTGGCTGGCGGAGCCCGCCGC
GCCGCAGGCGCTCCTTGCCCGCGGGCGGCTCGTCGAGAGGTGAGGAGGGA
CGAGCGATGAGAGGCCGTCTTGAGAGCAGAAAGAATTCAAGTGTGTGTAT
TGAATGTAGTGGCATGAAACCTGAGTACCCTTTTTTGCATTCCTTGAGCT
TGTCTCGGTAGTCTGAGGATAAAGGTGGTTCTTCAGCCACTCACCGGCGC
CTTCAACTTTGCAGGACCGTCCCTCCCTGTTCATCTTTTCCAATGTATCT
GCGTTCTGTGGATTTCTCTTCCGTTTTATTTTTCCTCACAAACGATGGTT
GCGGCTGTAACGGACGGATAAAAGCAGCTACGACGATGGCAGAGGCTACG
CGTTTCGGGCGGCGCGCGCCGTCGCTTCGGGGCTCAGCAGCGTGGCGGTC
ACGGGCACAGCCGCCGCATCGTCAATCATGAGCGCGCCACGCTCCCGGTC
CGCAGTACCCGATGAAGGCGGCGGCCGCGGCGGCGGCGACGGCGGCGGCG
GCGATGGCGGAAATGGCTTAAGTGGCGACAACGGTGGCAGCGGCAATGGC
GGCGGCGGCGGTGGCGGAAGCGCGAAGGCGCACGAAGCGGCGGCAGCAGG
CACGTGGAGAGGGGTATGATGTGGGCGACGCAACGGCTCGACGCGACAGC
AGGCGGCGGCTAGCCGGCCCCTGGCCCTCGCCGCGCCGGCGAGAGCGGTG
GTGTGCTCAGTTTTGCTGGTGGCGCTGAGTATGCAAGTATGCATGTTGTT
TCTCTTTGGCGGTGAGTTGCATTCTGGGTAGAGCGGGAACAGTTGCGGAT
GGATCGGCTCTACCGGTTGAGCAACAGTGTAAGCCTCGGCGGATACAAGT
GACCGAACGTTTCTGTGAAAATAAAATAAGGGCGCTTGAATGTTGGCGTT
TTGTCTGGGTGGACATAGAAACATAATGCGCCATCGAATCAGAGATGTAC
TGGGATTAAAAAAAGTGCAGCCCCGCCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5259:793..2972-

>mRNA_P-wetherbeei_contig5259.1.1 ID=mRNA_P-wetherbeei_contig5259.1.1|Name=mRNA_P-wetherbeei_contig5259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig5259:793..2972- (Phaeothamnion wetherbeei SAG_119_79)
GCTTTCGGAGGAGTATGGGCATACCGGCACGCCCAAGACGTGTCGAAGAG
GCGAAAATTGGAAAGAGCAAGGCGCAGCTCGCACAGACCGAAGCGGTCCC
TAGGCGAGCTCGCCGAGTTCGACGCCGGTCAGCGGTCGTCGGCGCGCGTA
CTATCGTCGCCGCGCCTCGTCCCGTCCATCGGGACGAGCCTGGTGCACCT
GACGCTGCCGCGCGGCACGCGAACGCACGGCGACCTCTGCTTCCTCGGCG
TCGGCGCAGACGGCGGGGCGGGTGCCGGATGCAACACCTTCTACGTACTG
AGCGGCTCGGGAATGGCGCTCGCGAACGGATCGGAGGTGCCGGTGGACCC
GGGGGATGTCCTCATCTTCCGGCCCGGCTCGGCCTTCTACGTGGCCAACA
CGGGGTGGCGCGGCCAGCCCATGGCGCTACTGTGGCTGGCGGAGCCCGCC
GCGCCGCAGGCGCTCCTTGCCCGCGGGCGGCTCGTCGAGAGCTACGACGA
TGGCAGAGGCTACGCGTTTCGGGCGGCGCGCGCCGTCGCTTCGGGGCTCA
GCAGCGTGGCGGTCACGGGCACAGCCGCCGCATCGTCAATCATGAGCGCG
CCACGCTCCCGGTCCGCAGTACCCGATGAAGGCGGCGGCCGCGGCGGCGG
CGACGGCGGCGGCGGCGATGGCGGAAATGGCTTAAGTGGCGACAACGGTG
GCAGCGGCAATGGCGGCGGCGGCGGTGGCGGAAGCGCGAAGGCGCACGAA
GCGGCGGCAGCAGGCACGTGGAGAGGGGTATGA
back to top