mRNA_P-wetherbeei_contig5257.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5257.3.1
Unique NamemRNA_P-wetherbeei_contig5257.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5257.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5257contigP-wetherbeei_contig5257:2949..3876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size760
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.268554-UTR-P-wetherbeei_contig5257:2948..33051683186787.268554-UTR-P-wetherbeei_contig5257:2948..3305Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5257 2949..3305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.2776992-CDS-P-wetherbeei_contig5257:3305..34321683186787.2776992-CDS-P-wetherbeei_contig5257:3305..3432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5257 3306..3432 +
1683186787.2861404-CDS-P-wetherbeei_contig5257:3601..38761683186787.2861404-CDS-P-wetherbeei_contig5257:3601..3876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5257 3602..3876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5257.3.1prot_P-wetherbeei_contig5257.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5257 3306..3876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5257.3.1

>prot_P-wetherbeei_contig5257.3.1 ID=prot_P-wetherbeei_contig5257.3.1|Name=mRNA_P-wetherbeei_contig5257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MAQLWERISLQVEELTRLLGKEAASCPNTHFARHVPEHILHFGLAPETQT
WERNHQQLKGMNSSSSGRDVERHYMLRSNVLVALEAMRDGLNWECQRYDV
KKRTYERVRMTAGSGCRDILKKFGHLIRGAGDAS
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mRNA from alignment at P-wetherbeei_contig5257:2949..3876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5257.3.1 ID=mRNA_P-wetherbeei_contig5257.3.1|Name=mRNA_P-wetherbeei_contig5257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=928bp|location=Sequence derived from alignment at P-wetherbeei_contig5257:2949..3876+ (Phaeothamnion wetherbeei SAG_119_79)
GTAACCGGCATGCAGAAATGGTTGTTTGCCGAGGTCTCTGTCGTCGTGCT
GTCGCGATCCTTCGCCATTCTCCGGCAGTCGTCAGCAGGTTGCGGCGGCG
TCGACGGCGGCGTCGGCCGTGGCGGCCGTGGCGGCAGCAGCGGCGGTCGG
GGAAAGAGCGTCGGCGGCGGCAAGGGTTAAAAAAAACAGTAAACGGTAGA
GGGGGCGGCACTTTCAGCTGGAATCAAGAGGTTCGGCGACGACTTACTGG
AGACTGCGGGTCCCCTACCGCGGTCATCCGTCTCATCATGGATACCGCCA
TTGCCTACGGCTGATGTGACGCGTGTGTTGCGGCTGGCGAGGCCGAATAC
CGTCGACATGGCCCAGCTTTGGGAGCGGATTTCCCTGCAAGTGGAGGAGC
TGACGAGGCTGCTCGGAAAGGAGGCCGCCAGCTGCCCCAACACTCATTTT
GCTCGCCACGTGCCGGAGCACATACTTCATTTTGGTAAGGTCGCAAGTCT
TCTCCTTGCGCTTATTACCATCAGTTGAAGATTGATCTCGTCTCCTTCAA
AAAGATATGCGAGGCCGCTCTCAAACGGAAGAGTGAGACACCGCCCCTGA
ACTGCTGCCCTAATGTGTCTCCGCTTGCTGAATGTGAATTGCGATTTTGT
CAGGTCTTGCTCCGGAGACCCAGACGTGGGAGCGGAATCACCAGCAGTTG
AAAGGGATGAATTCGTCGAGCTCTGGGCGCGACGTTGAACGCCACTACAT
GCTTCGGTCCAACGTGCTAGTGGCTCTCGAGGCGATGCGGGACGGGCTGA
ACTGGGAATGTCAGCGGTACGACGTGAAGAAGCGAACGTACGAGCGCGTG
CGGATGACGGCGGGGAGCGGTTGTCGGGATATCCTGAAGAAATTCGGGCA
CCTGATTCGCGGAGCCGGCGATGCCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5257:2949..3876+

>mRNA_P-wetherbeei_contig5257.3.1 ID=mRNA_P-wetherbeei_contig5257.3.1|Name=mRNA_P-wetherbeei_contig5257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5257:2949..3876+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCAGCTTTGGGAGCGGATTTCCCTGCAAGTGGAGGAGCTGACGAG
GCTGCTCGGAAAGGAGGCCGCCAGCTGCCCCAACACTCATTTTGCTCGCC
ACGTGCCGGAGCACATACTTCATTTTGGTCTTGCTCCGGAGACCCAGACG
TGGGAGCGGAATCACCAGCAGTTGAAAGGGATGAATTCGTCGAGCTCTGG
GCGCGACGTTGAACGCCACTACATGCTTCGGTCCAACGTGCTAGTGGCTC
TCGAGGCGATGCGGGACGGGCTGAACTGGGAATGTCAGCGGTACGACGTG
AAGAAGCGAACGTACGAGCGCGTGCGGATGACGGCGGGGAGCGGTTGTCG
GGATATCCTGAAGAAATTCGGGCACCTGATTCGCGGAGCCGGCGATGCCA
GC
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