mRNA_P-wetherbeei_contig10185.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10185.1.1
Unique NamemRNA_P-wetherbeei_contig10185.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9GRB2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRB2_FAGSY)

HSP 1 Score: 249 bits (637), Expect = 8.670e-71
Identity = 177/531 (33.33%), Postives = 260/531 (48.96%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYG--------HVGRRDAVHLCARGGV*LRGACTRWKW*R-------HISMPRSRASCG-----CACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY         H   R  + L A   + L     +  +          +  P      G     C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ + +D +A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR        PG  + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  147 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVANQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRRARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 645
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9H0T6_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H0T6_FAGSY)

HSP 1 Score: 251 bits (642), Expect = 9.490e-70
Identity = 178/531 (33.52%), Postives = 260/531 (48.96%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYGHVGRRDAVHLCARGGV*L-------------RGACTRWKW*RHISMPRSRA-------SCGCACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY  V      H   R  + L             + A         I M +          +  C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ + +D  A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P   +VG ++Y  V TR D+   V +++R + +PR   W A  W+ RYLKGT E G+LFSR        PG  + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  397 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGKRFKARLVAKGYSQRHGIDYDEVFSLVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSLRQ---WYKRFDSYMIQIGYARC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASVVGCLMYAMVCTRPDLAHAVSTVSRYMANPRREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 895
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9GCE7_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GCE7_FAGSY)

HSP 1 Score: 244 bits (624), Expect = 9.570e-70
Identity = 178/531 (33.52%), Postives = 260/531 (48.96%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYG--------HVGRRDAVHLCARGGV*L-----RGACTRWKW*RHISM--PRSRASCG-----CACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY         H   R  + L A   + L     + A         I M  P      G     C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ +++D +   + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR        PG  + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H ++Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:   57 EANESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVAHQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDKETRKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMFTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCNSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 555
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 245 bits (626), Expect = 3.130e-69
Identity = 172/528 (32.58%), Postives = 260/528 (49.24%), Query Frame = 1 
Query:  223 SVAEALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRAADGAILRDKARCVAQGFSQRLGVDYGHV--------GRRDAVHLCARGGV*LRGACTRWKW*R-------HISMPRSRASCG---CACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGI-LVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTK 1749
            +V+EAL GP    W  AMQ+++ +      W   + +P  R  +G +WVF  K  ADG+I R KAR VAQGFSQR GVDY             R  + L  + G+ L        +         ++  P      G    AC+   S     +   C W S      ++ G +             ++D C++V+ +          G   VV+IHVD+++ AG     I   K SI++RF +KD+G +  +LG+ ++Q+D K   + + QP Y   ++ ++ M +  PV+TP    +   SA        ++        +  VG++LYL+  TR DI   V ++ +   +P    W A   + RYLKGT   GLL+S +A      P   +G++DADWA +++ R+S   Y F  +GAA+SWRSK Q C A  T  AEYVA + A Q ALW+R+L   L + +     I+EDNQ    ++ NP    R KHIDIK++ VR++VE   + ++  P    LADL TK
Sbjct:  148 TVSEALCGPNAERWHEAMQQEMDSLQEHDVWE-LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRC-WNSVLDEHLKSIGFTQ-----------TESDPCIYVKEE---------DGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAK---VWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAME------DSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENA-----NPDC-VGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTK 638
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9EIR6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIR6_FAGSY)

HSP 1 Score: 250 bits (639), Expect = 2.590e-68
Identity = 177/529 (33.46%), Postives = 260/529 (49.15%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYGHVGRRDAVHLCARGGV*L-------------RGACTRWKW*RHISMPRSRA-------SCGCACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTK 1749
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY  V      H   R  + L             + A         I M +          +  C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      + G K+ + ++F MKDLG    +LG+ +++D +A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR        PG  + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TK
Sbjct:  699 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNGLKSLLHKKFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADILTK 1195
[Close]
BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 248 bits (632), Expect = 4.870e-68
Identity = 175/529 (33.08%), Postives = 257/529 (48.58%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYGHVGRRDAVHLCARGGV*L-------------RGACTRWKW*RHISMPRSRA-------SCGCACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY  V      H   R  + L             + A         I M +          +  C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ + +D  A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR +        + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  464 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTN-----SVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 962
[Close]
BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9EPH6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EPH6_FAGSY)

HSP 1 Score: 250 bits (638), Expect = 5.240e-68
Identity = 178/529 (33.65%), Postives = 260/529 (49.15%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYG--------HVGRRDAVHLCARGGV*L-----RGACTRWKW*RHISM--PRSRASCG-----CACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM A+ E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY         H   R  + L A   + L     + A         I M  P      G     C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LGI +++D +A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR          + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  851 EAIESSENDKWMEAIVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVAHQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQLGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNKLKSLLHKEFEMKDLGAAKKILGIEIRRDREARKLWLSQKNYIKKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQLGTN-----SVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 1349
[Close]
BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9FRN5_FAGSY (CCHC-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRN5_FAGSY)

HSP 1 Score: 249 bits (636), Expect = 6.660e-68
Identity = 177/531 (33.33%), Postives = 260/531 (48.96%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYGHVGRRDAVHLCARGGV*L-------------RGACTRWKW*RHISMPRSRA-------SCGCACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY  V      H   R  + L             + A         I M +          +  C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ +++D +A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P    VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR        PG  + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  703 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 1201
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A2N9FV67_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FV67_FAGSY)

HSP 1 Score: 249 bits (636), Expect = 6.730e-68
Identity = 175/529 (33.08%), Postives = 259/529 (48.96%), Query Frame = 1 
Query:  232 EALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRA-ADGAILRDKARCVAQGFSQRLGVDYGHVGRRDAVHLCARGGV*L-------------RGACTRWKW*RHISMPRSRA-------SCGCACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            EA+E  E  +WM AM E+  +  + KTW   + +P G+  IG +WVF KK A ++    R KAR VA+G+SQR G+DY  V      H   R  + L             + A         I M +          +  C  +  L   + + R    W     S     G + C           + DCCV+VR            G+Y+ + ++VD++L A      +   K+ + + F MKDLG    +LG+ +++D +A  + LSQ +YI  +L +F M DA PV TP        S ++ P    E   M+  P   +VG ++Y  V TR D+   V +++R + +P    W A  W+ RYLKGT E G+LFSR          + +GY DAD+A E+D RRS   YVF  SG  I W+S +Q   A  T EAEY+A A A + ALWL+ L + LGL       +H D+Q    +A N     R KHID++FH +RE + +G++VL     ++  AD++TKP+
Sbjct:  706 EAIESSEKDKWMEAMVEENESLSKNKTWE-LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQ---WYKRFDSYMIQIGYTRC-----------EYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASVVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQP-----RTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 1204
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BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 241 bits (615), Expect = 8.870e-68
Identity = 179/541 (33.09%), Postives = 255/541 (47.13%), Query Frame = 1 
Query:  187 AAAAAVDGPVSQSVAEALEGPEGTEWMAAMQEQLSARDRTKTWRRSSHVPHGRNVIGWRWVFAKKRAADGAILRDKARCVAQGFSQRLGVDYGH----VGR----RDAVHLCARGGV*LRGACTRWKW*R-------HISMPRSRASCG---CACRPGLSASRTARRYSC*WPSTA*SKRRTFGISACILGF*ARLSAVDADCCVFVRGDVSPVVAAGGKGTYLVVSIHVDELLAAGAPTSAITGFKASISQRFAMKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEVRSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVAAAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKHIDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL 1755
            A AA  D    ++V EAL  P+ T+W+ AM++++ +    + W     +P  R  +G +WVF  K  ADG +   KAR VAQGFSQ  G DY      V R    R  + L A+ G+ L        +         ++  P      G     CR   S     +   C W S    K +  G                 D C++V+ +          G   +++++VD++L AG     I   K +++++F MKD+G+ H  LG+ V Q   +  I + Q  Y   +L RF M  + P  TP  PG     AA       ++ ++     +  VG +LYL+  TR DI   V  + R    P    W+A   ++RYL GTR+ GLL+  S      T  + +GY+DADWA ++D R+S   YVF  S AAISWRSK Q C A  T EAEY+  A A Q A+WL++L   L  + T    I EDNQ    +A N     R KHIDIK+H +RE V S  V L      + +AD+ TK L
Sbjct:  120 ATAANHDKNEPRTVKEALSSPQKTKWVKAMEKEMESLKTNEVWN-LVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEHLVCRLRRSICGLKQSPRC-WNSVLDRKLKNMGFVQ-----------TTGDPCIYVKEE---------GGEIFIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAAD------DSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSK-----TTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGL 627
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GRB2_FAGSY8.670e-7133.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9H0T6_FAGSY9.490e-7033.52Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9GCE7_FAGSY9.570e-7033.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT3.130e-6932.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EIR6_FAGSY2.590e-6833.46Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HJ76_FAGSY4.870e-6833.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EPH6_FAGSY5.240e-6833.65Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FRN5_FAGSY6.660e-6833.33CCHC-type domain-containing protein n=2 Tax=Fagus ... [more]
A0A2N9FV67_FAGSY6.730e-6833.08Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6S7JEY7_PARCT8.870e-6833.09Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10185contigP-wetherbeei_contig10185:98..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1755
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.65e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size858
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.9531171-CDS-P-wetherbeei_contig10185:97..9551683185857.9531171-CDS-P-wetherbeei_contig10185:97..955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10185 98..955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.9641488-UTR-P-wetherbeei_contig10185:955..18521683185857.9641488-UTR-P-wetherbeei_contig10185:955..1852Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10185 956..1852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10185.1.1prot_P-wetherbeei_contig10185.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10185 98..955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10185.1.1

>prot_P-wetherbeei_contig10185.1.1 ID=prot_P-wetherbeei_contig10185.1.1|Name=mRNA_P-wetherbeei_contig10185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=286bp
MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTP
SCPGAPPWSAARAPATTAEAAKMAGNPLRELVGTVLYLAVTTRLDIFDEV
RSLTRTVHDPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAI
GYADADWAREIDRRRSIGAYVFLRSGAAISWRSKMQDCTAALTCEAEYVA
AAYAVQHALWLRRLARGLGLQVTAATPIHEDNQPCCNVADNPFSERRVKH
IDIKFHIVRERVESGEVVLVPTPATDQLADLVTKPL
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mRNA from alignment at P-wetherbeei_contig10185:98..1852-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10185.1.1 ID=mRNA_P-wetherbeei_contig10185.1.1|Name=mRNA_P-wetherbeei_contig10185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-wetherbeei_contig10185:98..1852- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCAGGCGGCTGTGCGGCGGGCAGCGTCACAGCGCCGGCAATGGCGGA
GACGATGGCATTGTCTGCGGCTGACGGTGTTTGGACGGAGCTTTCGTCGC
CGACCGGCGTACGAAACCTTTCTTTTCCGTTACCTTTAGCGTCCGAGGCG
CAGCAGTACTCAACGGCGACTGCCGAGATCCTCACGGCAGCAGCGGCGGC
GGTTGACGGCCCTGTGTCACAGTCAGTAGCGGAGGCGCTGGAGGGACCGG
AAGGAACGGAGTGGATGGCGGCGATGCAGGAACAGCTTTCTGCACGTGAC
CGCACCAAGACATGGCGCCGCTCGTCGCATGTTCCTCATGGTCGCAACGT
CATCGGCTGGCGCTGGGTGTTTGCGAAAAAGCGGGCGGCGGACGGCGCCA
TTCTGCGCGACAAAGCCCGGTGTGTGGCGCAGGGCTTTTCGCAGCGGCTG
GGAGTGGACTATGGTCATGTCGGCCGACGCGATGCGGTTCATCTTTGCGC
TCGCGGCGGAGTTTGACTTCGAGGTGCGTGCACCAGGTGGAAGTGGTGAC
GGCATATCTCAATGCCCCGCTCACGGGCCTCTTGTGGATGCGCGTGCCGC
CCGGGCCTTTCGGCTTCGAGGACTGCGCGGCGCTACAGTTGCTGATGGCC
ATCTACGGCCTGAAGCAAGCGGCGTACCTTTGGCATCTCTGCCTGCATTC
TTGGCTTTTGAGCGCGGCTTTCGGCAGTGGACGCTGACTGCTGTGTTTTC
GTGCGCGGCGACGTCTCTCCAGTAGTGGCGGCCGGCGGGAAGGGCACCTA
CCTCGTAGTCAGCATCCATGTTGACGAGCTTCTCGCCGCCGGCGCCCCAA
CATCGGCCATCACGGGCTTTAAGGCATCCATCTCACAGCGCTTTGCCATG
AAGGACTTGGGGCGCGTCCACACGTTGCTCGGCATCCTCGTTCAGCAGGA
CCTCAAGGCGGGCACTATCCGCCTGTCGCAGCCGCACTACATCGACGACC
TGCTGGCGCGTTTCCGCATGAGCGATGCCTGGCCGGTCCAGACGCCATCT
TGCCCCGGTGCCCCGCCCTGGAGCGCGGCGCGGGCACCGGCAACGACGGC
GGAAGCAGCGAAGATGGCGGGCAATCCGTTGCGTGAGTTGGTCGGGACGG
TGCTCTACCTGGCCGTCACGACGCGGTTAGACATTTTTGACGAGGTGCGA
TCGCTCACCCGCACCGTGCACGACCCCCGGCTCCCCGACTGGCTGGCCGC
TCTCTGGCTGCTCCGCTACCTAAAGGGCACCCGGGAGAAGGGGCTGCTGT
TTAGCCGGAGTGCTGCTGCCCGTATGGCGACGCCGGGGGCGGCGATTGGT
TATGCCGATGCGGACTGGGCACGCGAAATTGACCGCCGGCGGTCGATTGG
GGCCTATGTTTTCCTTCGGAGCGGCGCCGCCATCTCATGGCGGTCCAAAA
TGCAGGACTGCACCGCTGCCCTCACTTGCGAGGCGGAGTACGTCGCCGCA
GCCTATGCCGTGCAGCATGCACTCTGGCTGCGGCGGCTGGCGCGGGGCCT
CGGGCTCCAAGTGACGGCTGCCACGCCCATCCACGAGGACAATCAGCCCT
GCTGCAACGTCGCCGACAACCCCTTCAGCGAACGTCGCGTGAAGCACATC
GACATCAAGTTTCACATAGTGCGGGAGCGGGTGGAGAGTGGAGAGGTGGT
TTTGGTGCCCACCCCAGCAACTGACCAGCTGGCAGATCTGGTGACCAAGC
CACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10185:98..1852-

>mRNA_P-wetherbeei_contig10185.1.1 ID=mRNA_P-wetherbeei_contig10185.1.1|Name=mRNA_P-wetherbeei_contig10185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig10185:98..1852- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGACTTGGGGCGCGTCCACACGTTGCTCGGCATCCTCGTTCAGCA
GGACCTCAAGGCGGGCACTATCCGCCTGTCGCAGCCGCACTACATCGACG
ACCTGCTGGCGCGTTTCCGCATGAGCGATGCCTGGCCGGTCCAGACGCCA
TCTTGCCCCGGTGCCCCGCCCTGGAGCGCGGCGCGGGCACCGGCAACGAC
GGCGGAAGCAGCGAAGATGGCGGGCAATCCGTTGCGTGAGTTGGTCGGGA
CGGTGCTCTACCTGGCCGTCACGACGCGGTTAGACATTTTTGACGAGGTG
CGATCGCTCACCCGCACCGTGCACGACCCCCGGCTCCCCGACTGGCTGGC
CGCTCTCTGGCTGCTCCGCTACCTAAAGGGCACCCGGGAGAAGGGGCTGC
TGTTTAGCCGGAGTGCTGCTGCCCGTATGGCGACGCCGGGGGCGGCGATT
GGTTATGCCGATGCGGACTGGGCACGCGAAATTGACCGCCGGCGGTCGAT
TGGGGCCTATGTTTTCCTTCGGAGCGGCGCCGCCATCTCATGGCGGTCCA
AAATGCAGGACTGCACCGCTGCCCTCACTTGCGAGGCGGAGTACGTCGCC
GCAGCCTATGCCGTGCAGCATGCACTCTGGCTGCGGCGGCTGGCGCGGGG
CCTCGGGCTCCAAGTGACGGCTGCCACGCCCATCCACGAGGACAATCAGC
CCTGCTGCAACGTCGCCGACAACCCCTTCAGCGAACGTCGCGTGAAGCAC
ATCGACATCAAGTTTCACATAGTGCGGGAGCGGGTGGAGAGTGGAGAGGT
GGTTTTGGTGCCCACCCCAGCAACTGACCAGCTGGCAGATCTGGTGACCA
AGCCACTG
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