mRNA_P-wetherbeei_contig52535.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52535.1.1
Unique NamemRNA_P-wetherbeei_contig52535.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52535.1.1 vs. uniprot
Match: UPI0018132D33 (Calcium-binding protein n=1 Tax=Streptomyces sp. TaxID=1931 RepID=UPI0018132D33)

HSP 1 Score: 52.4 bits (124), Expect = 5.550e-5
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:    4 DASFGTGGVVAAP-----DMQRLATGAAGRIYAV------AGFDDVTVTALTATGTIDGSFGVGGSLSVDLTS------DHSVADLAVAPDGSLYIAGANRIDPATFQPMLLHVSTGGVLDSSFVPALPADADMVMSMDIDG 378
            D +FGTGG V  P         LA    GRI         +G +D  +   T  GT+DG+FG GG+++  L+S      D S   +AV PDG +  AG +  D A     L+  + GG LD +F      D D +++ D +G
Sbjct:  218 DTTFGTGGSVLTPFPGGGSGYDLALQPDGRIVVAGDTGGPSGPNDFALARYTTNGTLDGTFGAGGTVTTVLSSASGFAGDDSARGVAVQPDGKIVAAGYSAYDFA-----LVRYTAGGGLDPAF------DTDGIVTTDFNG 348
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BLAST of mRNA_P-wetherbeei_contig52535.1.1 vs. uniprot
Match: UPI001808AA77 (DUF11 domain-containing protein n=2 Tax=Streptomyces sp. TaxID=1931 RepID=UPI001808AA77)

HSP 1 Score: 52.4 bits (124), Expect = 6.370e-5
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:    4 DASFGTGGVVAAP-----DMQRLATGAAGRIYAV------AGFDDVTVTALTATGTIDGSFGVGGSLSVDLTS------DHSVADLAVAPDGSLYIAGANRIDPATFQPMLLHVSTGGVLDSSFVPALPADADMVMSMDIDG 378
            D +FGTGG V  P         LA    GRI         +G +D  +   T  GT+DG+FG GG+++  L+S      D S   +AV PDG +  AG +  D A     L+  + GG LD +F      D D +++ D +G
Sbjct:  218 DTTFGTGGSVLTPFPGGGSGYDLALQPDGRIVVAGDTGGPSGPNDFALARYTTNGTLDGTFGTGGTVTTVLSSASGFAGDDSARGVAVQPDGKIVAAGYSAYDFA-----LVRYTAGGGLDPAF------DTDGIVTTDFNG 348
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0018132D335.550e-533.10Calcium-binding protein n=1 Tax=Streptomyces sp. T... [more]
UPI001808AA776.370e-533.10DUF11 domain-containing protein n=2 Tax=Streptomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52535contigP-wetherbeei_contig52535:68..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog864051.BurJ1DRAFT_3700
PFAMsDUF4347
Model size474
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000137
EggNOG OGsCOG0726@1|root,COG0823@1|root,COG2911@1|root,COG2931@1|root,COG3210@1|root,COG3420@1|root,COG0726@2|Bacteria,COG0823@2|Bacteria,COG2911@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG3420@2|Bacteria,1MU7T@1224|Proteobacteria,2WI67@28216|Betaproteobacteria,1KMDS@119065|unclassified Burkholderiales
DescriptionDomain of unknown function (DUF4347)
Cds size474
COG categoryMQU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.0497487-CDS-P-wetherbeei_contig52535:67..5411683186787.0497487-CDS-P-wetherbeei_contig52535:67..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52535 68..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52535.1.1prot_P-wetherbeei_contig52535.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52535 68..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52535.1.1

>prot_P-wetherbeei_contig52535.1.1 ID=prot_P-wetherbeei_contig52535.1.1|Name=mRNA_P-wetherbeei_contig52535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
LDASFGTGGVVAAPDMQRLATGAAGRIYAVAGFDDVTVTALTATGTIDGS
FGVGGSLSVDLTSDHSVADLAVAPDGSLYIAGANRIDPATFQPMLLHVST
GGVLDSSFVPALPADADMVMSMDIDGSRLIVLTAEAFNGGGRLFPLHLDG
SIDQSYAG
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mRNA from alignment at P-wetherbeei_contig52535:68..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52535.1.1 ID=mRNA_P-wetherbeei_contig52535.1.1|Name=mRNA_P-wetherbeei_contig52535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig52535:68..541- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGCAAGCTTCGGCACGGGAGGCGTGGTCGCCGCGCCGGACATGCA
ACGCTTGGCAACGGGCGCTGCAGGACGCATCTACGCCGTCGCCGGCTTCG
ACGACGTCACGGTCACTGCGCTGACCGCCACCGGGACGATCGACGGTTCG
TTCGGCGTGGGCGGCAGCCTGTCCGTCGATCTCACGTCGGATCACAGCGT
CGCTGACCTCGCCGTCGCTCCGGACGGATCTCTCTACATTGCCGGGGCGA
ATCGAATCGACCCGGCGACTTTCCAGCCGATGCTGCTGCACGTGTCGACG
GGCGGGGTCCTCGACTCGTCCTTCGTCCCGGCGCTCCCCGCCGACGCAGA
CATGGTGATGTCGATGGACATCGACGGTTCGCGCCTGATCGTCCTGACCG
CCGAGGCGTTCAACGGAGGTGGGCGGCTGTTTCCGCTGCACCTCGACGGA
TCGATCGACCAGTCGTATGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52535:68..541-

>mRNA_P-wetherbeei_contig52535.1.1 ID=mRNA_P-wetherbeei_contig52535.1.1|Name=mRNA_P-wetherbeei_contig52535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig52535:68..541- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGCAAGCTTCGGCACGGGAGGCGTGGTCGCCGCGCCGGACATGCA
ACGCTTGGCAACGGGCGCTGCAGGACGCATCTACGCCGTCGCCGGCTTCG
ACGACGTCACGGTCACTGCGCTGACCGCCACCGGGACGATCGACGGTTCG
TTCGGCGTGGGCGGCAGCCTGTCCGTCGATCTCACGTCGGATCACAGCGT
CGCTGACCTCGCCGTCGCTCCGGACGGATCTCTCTACATTGCCGGGGCGA
ATCGAATCGACCCGGCGACTTTCCAGCCGATGCTGCTGCACGTGTCGACG
GGCGGGGTCCTCGACTCGTCCTTCGTCCCGGCGCTCCCCGCCGACGCAGA
CATGGTGATGTCGATGGACATCGACGGTTCGCGCCTGATCGTCCTGACCG
CCGAGGCGTTCAACGGAGGTGGGCGGCTGTTTCCGCTGCACCTCGACGGA
TCGATCGACCAGTCGTATGCCGGC
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