mRNA_P-wetherbeei_contig52528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52528.1.1
Unique NamemRNA_P-wetherbeei_contig52528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: A0A7S2B9P1_9STRA (Derlin n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B9P1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.880e-27
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNENVR+SFLGLFPFTAPYLPWVLL FS LL NP T+D++GI+VGH Y+FL++VYP   E+RG
Sbjct:   20 RRNENVRMSFLGLFPFTAPYLPWVLLTFSILLGNPATIDLIGIIVGHLYYFLQYVYPVVAEIRG 83
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: A0A7S2FTR3_9STRA (Derlin (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FTR3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.310e-25
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYPEV 177
            RRNE+VR+SFLGLFPFTAPYLPWVLL FS LL NP T+D++GI VGH Y+FLE+VYP++
Sbjct:  106 RRNEHVRMSFLGLFPFTAPYLPWVLLTFSVLLGNPATIDLIGICVGHIYYFLEYVYPQI 164
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: A0A6U2LIQ2_9STRA (Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2LIQ2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.080e-25
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNE+VR+SFLGLFPFTAPYLPWV+LAFS LL N  T+D +GI+VGHTY+FLE+VYP   ++RG
Sbjct:   35 RRNEDVRMSFLGLFPFTAPYLPWVMLAFSVLLGNSPTIDAIGILVGHTYYFLEYVYPVIADIRG 98
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: F0YHR9_AURAN (Derlin (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHR9_AURAN)

HSP 1 Score: 97.1 bits (240), Expect = 7.150e-24
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYPEV 177
            RRN+ VR+SFLGLFPFTAPYLPWVLLAFS LL NP T D+VGI VGH Y++LE+VYP++
Sbjct:  126 RRNDAVRMSFLGLFPFTAPYLPWVLLAFSVLLGNPATTDLVGIAVGHAYYYLEYVYPKL 184
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: A0A7S0C6N2_9STRA (Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C6N2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.800e-24
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNE+ R+SFLG+F FTAPYLPWV+L FS LL NPLTMD++GI VGHTY+FLE+VYP   ++RG
Sbjct:  193 RRNESTRMSFLGVFSFTAPYLPWVMLTFSILLGNPLTMDVIGIFVGHTYYFLEYVYPVLADIRG 256
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: W7U6A3_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6A3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-23
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNE+VRL+FL LFPFTAPYLPWVLL FS +L NP T+D++GIVVGHTY+FLEFV+P   E RG
Sbjct:  224 RRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARG 287
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: A0A7S2EGE3_TRICV (Derlin n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EGE3_TRICV)

HSP 1 Score: 97.4 bits (241), Expect = 1.340e-23
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNE+VR+SFLG+F F APYLPWV+L FS LL NP+T+D+VGI+VGHTY+FLE+VYP   E+RG
Sbjct:  145 RRNEDVRMSFLGVFSFKAPYLPWVMLGFSVLLGNPVTIDVVGILVGHTYYFLEYVYPVIAEIRG 208
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: B8C4L3_THAPS (Derlin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4L3_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 8.350e-23
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYP---EVRG 183
            RRNE++R+SFLG+F F APYLPWV+L FS LL NP+T+D +GI+VGHTY+FLE+VYP   E+RG
Sbjct:  128 RRNEDMRMSFLGVFTFNAPYLPWVMLTFSMLLGNPVTIDAIGILVGHTYYFLEYVYPVLAEIRG 191
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: K3WLS1_GLOUD (Derlin n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLS1_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-22
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYPEV 177
            RRNE+VR+SFLGLFPFTAPYLPWVLL+FS LL N  T D++GIVVGH Y+FLE VYP +
Sbjct:  124 RRNEHVRMSFLGLFPFTAPYLPWVLLSFSILLGNSATTDLIGIVVGHIYYFLEDVYPTI 182
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BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Match: H3GDY8_PHYRM (Derlin n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3GDY8_PHYRM)

HSP 1 Score: 93.2 bits (230), Expect = 5.850e-22
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYFFLEFVYPEV 177
            RRNE+VR+SFLGLFPFTAPYLPWVL +FS LL N  T D++GI+VGH Y+FLE VYP +
Sbjct:  127 RRNEHVRMSFLGLFPFTAPYLPWVLFSFSILLGNSATTDLIGIIVGHIYYFLEDVYPTI 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2B9P1_9STRA6.880e-2773.44Derlin n=1 Tax=Dictyocha speculum TaxID=35687 RepI... [more]
A0A7S2FTR3_9STRA6.310e-2574.58Derlin (Fragment) n=1 Tax=Florenciella parvula Tax... [more]
A0A6U2LIQ2_9STRA7.080e-2571.88Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516... [more]
F0YHR9_AURAN7.150e-2474.58Derlin (Fragment) n=1 Tax=Aureococcus anophageffer... [more]
A0A7S0C6N2_9STRA9.800e-2470.31Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepI... [more]
W7U6A3_9STRA1.200e-2373.44Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
A0A7S2EGE3_TRICV1.340e-2370.31Derlin n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7... [more]
B8C4L3_THAPS8.350e-2367.19Derlin n=1 Tax=Thalassiosira pseudonana TaxID=3512... [more]
K3WLS1_GLOUD1.240e-2274.58Derlin n=1 Tax=Globisporangium ultimum (strain ATC... [more]
H3GDY8_PHYRM5.850e-2271.19Derlin n=17 Tax=Peronosporaceae TaxID=4777 RepID=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52528contigP-wetherbeei_contig52528:95..277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009039935.1
Preferred nameDERL2
PFAMsDER1
Model size183
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC02120,RC03389,RC03391
KEGG koko:K13989,ko:K19737
KEGG ReactionR11216,R11218,R11220
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal anchor
GOsGO:0001558,GO:0001967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006986,GO:0007154,GO:0007165,GO:0007610,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030176,GO:0030307,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032527,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033554,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0040008,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042742,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045861,GO:0045927,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051246,GO:0051248,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051705,GO:0051707,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070085,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070887,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0097708,GO:0098542,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903513,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904380,GO:1904950,GO:1905897
Exons1
Evalue1.17e-24
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
EC2.1.1.320
Descriptionubiquitin-dependent ERAD pathway
Cds size183
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.8721328-CDS-P-wetherbeei_contig52528:94..2771683186786.8721328-CDS-P-wetherbeei_contig52528:94..277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52528 95..277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52528.1.1prot_P-wetherbeei_contig52528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52528 95..277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52528.1.1

>prot_P-wetherbeei_contig52528.1.1 ID=prot_P-wetherbeei_contig52528.1.1|Name=mRNA_P-wetherbeei_contig52528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
RRNENVRLSFLGLFPFTAPYLPWVLLAFSFLLQNPLTMDIVGIVVGHTYF
FLEFVYPEVRG
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mRNA from alignment at P-wetherbeei_contig52528:95..277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52528.1.1 ID=mRNA_P-wetherbeei_contig52528.1.1|Name=mRNA_P-wetherbeei_contig52528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig52528:95..277- (Phaeothamnion wetherbeei SAG_119_79)
AGGCGCAACGAGAACGTGCGGTTGAGCTTTCTGGGCCTGTTCCCTTTCAC
GGCGCCCTACCTGCCGTGGGTGCTGCTGGCCTTCTCCTTCCTGCTGCAGA
ACCCCCTCACAATGGACATTGTTGGCATCGTCGTTGGCCACACCTACTTC
TTTCTCGAATTCGTTTACCCCGAGGTGAGAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52528:95..277-

>mRNA_P-wetherbeei_contig52528.1.1 ID=mRNA_P-wetherbeei_contig52528.1.1|Name=mRNA_P-wetherbeei_contig52528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig52528:95..277- (Phaeothamnion wetherbeei SAG_119_79)
AGGCGCAACGAGAACGTGCGGTTGAGCTTTCTGGGCCTGTTCCCTTTCAC
GGCGCCCTACCTGCCGTGGGTGCTGCTGGCCTTCTCCTTCCTGCTGCAGA
ACCCCCTCACAATGGACATTGTTGGCATCGTCGTTGGCCACACCTACTTC
TTTCTCGAATTCGTTTACCCCGAGGTGAGAGGA
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