mRNA_P-wetherbeei_contig52526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52526.1.1
Unique NamemRNA_P-wetherbeei_contig52526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52526.1.1 vs. uniprot
Match: UPI001789814F (hypothetical protein n=1 Tax=Sphingopyxis sp. OAS728 TaxID=2663823 RepID=UPI001789814F)

HSP 1 Score: 54.3 bits (129), Expect = 1.860e-6
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    4 VTSVVQLANPG-EGADNARRWAAQDGALAKKALTVAFAEAGTLIPRAMTLTVEDHKRMQAG---ETLTIGAYRGKLQEQGPGG--TLLFNGGLVHVQTL 282
            + S+VQL     E  DN  +W+A DG LA+ ALT AFAE   LIP A+ L   D  R  A    +    G Y   ++    G    L+++ GLVH++TL
Sbjct:  207 IASIVQLGKRSYEHGDNVAQWSADDGKLARTALTTAFAEIERLIPYALALGPADVARFTAKNREKAFAAGLYAPLVERAADGSDAVLIWSNGLVHIRTL 305
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BLAST of mRNA_P-wetherbeei_contig52526.1.1 vs. uniprot
Match: A0A2D3RIV2_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. YGSMI21 TaxID=2077182 RepID=A0A2D3RIV2_9SPHN)

HSP 1 Score: 50.8 bits (120), Expect = 3.140e-5
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   10 SVVQLANPG-EGADNARRWAAQDGALAKKALTVAFAEAGTLIPRAMTL---TVEDHKRMQAGETLTIGAYRGKLQ--EQGPGGTLLFNGGLVHVQTL 282
            S+VQL     E  +N   W+A DG LAK+ALT AF +   LIP A+ L    ++ +   +  +    G Y   ++  E G G  L++N GL H+QTL
Sbjct:  205 SIVQLHTRSYEHYENVASWSADDGNLAKEALTAAFVQMEQLIPFALGLGKSDIDSYSSKKREKAFGAGLYGPLIKRGENGAGDILIWNDGLTHIQTL 301
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001789814F1.860e-638.38hypothetical protein n=1 Tax=Sphingopyxis sp. OAS7... [more]
A0A2D3RIV2_9SPHN3.140e-537.11Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52526contigP-wetherbeei_contig52526:249..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.8418818-CDS-P-wetherbeei_contig52526:248..5391683186786.8418818-CDS-P-wetherbeei_contig52526:248..539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52526 249..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52526.1.1prot_P-wetherbeei_contig52526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52526 249..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52526.1.1

>prot_P-wetherbeei_contig52526.1.1 ID=prot_P-wetherbeei_contig52526.1.1|Name=mRNA_P-wetherbeei_contig52526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
TVTSVVQLANPGEGADNARRWAAQDGALAKKALTVAFAEAGTLIPRAMTL
TVEDHKRMQAGETLTIGAYRGKLQEQGPGGTLLFNGGLVHVQTLFE*
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mRNA from alignment at P-wetherbeei_contig52526:249..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52526.1.1 ID=mRNA_P-wetherbeei_contig52526.1.1|Name=mRNA_P-wetherbeei_contig52526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig52526:249..539- (Phaeothamnion wetherbeei SAG_119_79)
ACCGTGACCAGCGTGGTCCAGCTCGCCAACCCCGGGGAGGGGGCCGACAA
CGCCCGGCGCTGGGCGGCGCAGGATGGAGCCTTGGCGAAGAAGGCGCTGA
CGGTGGCGTTCGCCGAGGCGGGAACGCTGATCCCGCGCGCGATGACCCTT
ACGGTCGAGGACCACAAGCGCATGCAGGCAGGCGAGACCCTGACCATCGG
GGCGTATCGCGGGAAGCTGCAGGAACAAGGTCCGGGCGGGACGCTGCTGT
TCAATGGGGGCTTGGTGCATGTCCAGACGCTTTTCGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52526:249..539-

>mRNA_P-wetherbeei_contig52526.1.1 ID=mRNA_P-wetherbeei_contig52526.1.1|Name=mRNA_P-wetherbeei_contig52526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig52526:249..539- (Phaeothamnion wetherbeei SAG_119_79)
ACCGTGACCAGCGTGGTCCAGCTCGCCAACCCCGGGGAGGGGGCCGACAA
CGCCCGGCGCTGGGCGGCGCAGGATGGAGCCTTGGCGAAGAAGGCGCTGA
CGGTGGCGTTCGCCGAGGCGGGAACGCTGATCCCGCGCGCGATGACCCTT
ACGGTCGAGGACCACAAGCGCATGCAGGCAGGCGAGACCCTGACCATCGG
GGCGTATCGCGGGAAGCTGCAGGAACAAGGTCCGGGCGGGACGCTGCTGT
TCAATGGGGGCTTGGTGCATGTCCAGACGCTTTTCGAATAG
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