mRNA_P-wetherbeei_contig52524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52524.1.1
Unique NamemRNA_P-wetherbeei_contig52524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A1F6PF01_9BACT (Uncharacterized protein n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1F6PF01_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.020e-8
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   94 FMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVNGN 378
            F+ +L+ Q+ +QDPL P   S    Q     QI  L  L   +A+ NQ  ++ AS++IGK VSL DP     T  G VS  + +S G  V+VNGN
Sbjct:   39 FLQLLMAQMKNQDPLNPTDSSQFMSQQAQFTQISELQKLNKSLASSNQ--IMQASSLIGKNVSLIDPNDAEKTILGTVSEAKINSTGASVIVNGN 131          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A0D8FUF1_9ACTN (Flagellar basal body rod modification protein n=1 Tax=Ferrimicrobium acidiphilum DSM 19497 TaxID=1121877 RepID=A0A0D8FUF1_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 2.240e-7
Identity = 33/97 (34.02%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   91 QFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAM-NQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVNGN 378
            +F+ +L+ +LT+Q+PL PM+ S M QQ   +  +Q LD++  +++++ +Q  VVNA+N+IG+TVS +  +G   +  G VS +  ++  + + +NG+
Sbjct:   37 EFLKLLVTELTNQNPLSPMNPSSMVQQTSSLSMVQLLDSVSNELSSIRSQAGVVNAANLIGQTVSYTTASGKQGS--GVVSGVAMANGSLNLNINGS 131          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A1F6RYL5_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Melainabacteria TaxID=1897007 RepID=A0A1F6RYL5_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.800e-7
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   82 EKQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAM-NQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVN 372
            ++  F+ +L+ QL +QDPL PM  ++   Q     QI  +  L   ++ + N   ++ AS++IGK V+++DP    NT TG V+  + S  G  +V+N
Sbjct:   32 DQDSFLQLLMMQLKYQDPLNPMGNTEFISQQAQFTQISEIQKLNKNMSNVANTNEIMQASSLIGKEVTITDPENSKNTITGAVTEAKISDKGTNIVIN 129          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: K2ECF7_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=K2ECF7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 5.330e-7
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   73 NATEKQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVN 372
            N  ++  F+ +L+ QL +QDPL+PM  ++   Q     QI  L  L   + + NQ  ++ AS +IGK V+L+DP    +T TG VS  R +     +VVN
Sbjct:   29 NTIDQDGFLQLLMTQLKYQDPLKPMDNAEFVSQQAQFTQISELQKLNKTMMSNNQ--LMQASTLIGKEVTLTDPENPDSTVTGTVSEARITDKNTNIVVN 126          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A1F6PZW1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium GWF2_37_15 TaxID=1801606 RepID=A0A1F6PZW1_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.270e-6
Identity = 38/94 (40.43%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   94 FMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVNG 375
            F+ +L+ QL HQDPL PMS  +   Q     QI  L  L        Q   V AS+++GKTVS  +P   T T  GQV+  + +  G  VVVNG
Sbjct:   25 FLQLLMTQLKHQDPLNPMSNQEFLSQQAQFTQISELQKLNKSFNG--QTLFVQASSLVGKTVSFLNPDNLTETLEGQVTEAKFNDKGTAVVVNG 116          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A847H7G9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Gastranaerophilales bacterium TaxID=2137880 RepID=A0A847H7G9_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 3.540e-5
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   94 FMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTGGTNTTTGQVSAIRQSSDGIQVVVN 372
            F+ +L+ Q+  Q+PL+PMS  DM  Q      +  L  L   IA+ NQ   V AS++IGKTVSL +P        G+V+  +  S GI VV++
Sbjct:   37 FLHLLMTQMQCQNPLEPMSNQDMIAQQAQFTTVSELQKLNASIASGNQ--FVQASSLIGKTVSLINPDNPEELIEGRVTEAKAGSYGIGVVID 127          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A2Z2KVL7_9BACL (Flagellar hook assembly protein FlgD n=1 Tax=Paenibacillus donghaensis TaxID=414771 RepID=A0A2Z2KVL7_9BACL)

HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   85 KQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSD 291
            K QF+ +L+ QL HQDP+QPM   +   Q+     ++ L  + TQ+ AMNQ ++ N S +IGK ++ +D
Sbjct:   30 KDQFLKILITQLQHQDPMQPMEDKEFIAQMAQFTSLEQLMNISTQLTAMNQ-SLGNVSGLIGKEITWND 97          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: A0A846QUY7_9DELT (Basal-body rod modification protein FlgD n=1 Tax=Desulfobaculum xiamenense TaxID=995050 RepID=A0A846QUY7_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 4.500e-5
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   82 EKQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNV----VNASNVIGKTV 279
            +K+ F+T+L+ QL HQDPL PM   + T QL     ++ L  +   +A+++Q  +    VNASN IGK V
Sbjct:   30 DKEDFLTLLVAQLQHQDPLNPMDDKEFTSQLAEFSNLEQLTAINKGVASLSQQTIHQEMVNASNFIGKEV 99          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: UPI0006CFD0BB (flagellar hook capping protein n=1 Tax=Desulfovibrio brasiliensis TaxID=221711 RepID=UPI0006CFD0BB)

HSP 1 Score: 51.2 bits (121), Expect = 4.580e-5
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   82 EKQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDT----LQTQIAAMNQGNVVNASNVIGKTVSLS 288
            ++Q F+T+L+ QLTHQDP+ PM  ++MT QL    Q++ L      L T +AA  Q  + +A   IGK V  S
Sbjct:   30 DQQDFLTILVAQLTHQDPMNPMEDTEMTGQLAEFSQLEQLTNINSGLDTMLAAQTQNEMYDAVGFIGKDVKAS 102          
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Match: UPI001AE26E85 (flagellar hook capping protein n=1 Tax=Paenibacillus shirakamiensis TaxID=1265935 RepID=UPI001AE26E85)

HSP 1 Score: 49.7 bits (117), Expect = 8.940e-5
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   67 DANATEKQQFMTMLLQQLTHQDPLQPMSGSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTGGT--NTTTGQVSAIRQSSDGI 357
            D  +  K QF+ +L+ QL++QDP QP+   +   Q+     ++ L  + TQ+  MNQ N+ N S +IGK ++ S+ T G   +++TGQ      S +GI
Sbjct:   26 DNQSMGKDQFLKILITQLSNQDPTQPLQDKEFIAQMAQFTSVEQLMNISTQLTNMNQ-NLGNLSGLIGKQITWSETTKGVEYDSSTGQAVTNTSSLNGI 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1F6PF01_9BACT2.020e-840.00Uncharacterized protein n=2 Tax=Cyanobacteria/Mela... [more]
A0A0D8FUF1_9ACTN2.240e-734.02Flagellar basal body rod modification protein n=1 ... [more]
A0A1F6RYL5_9BACT3.800e-732.65Uncharacterized protein n=2 Tax=unclassified Candi... [more]
K2ECF7_9BACT5.330e-736.00Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A1F6PZW1_9BACT1.270e-640.43Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]
A0A847H7G9_9BACT3.540e-538.71Uncharacterized protein n=1 Tax=Candidatus Gastran... [more]
A0A2Z2KVL7_9BACL4.040e-539.13Flagellar hook assembly protein FlgD n=1 Tax=Paeni... [more]
A0A846QUY7_9DELT4.500e-540.00Basal-body rod modification protein FlgD n=1 Tax=D... [more]
UPI0006CFD0BB4.580e-541.10flagellar hook capping protein n=1 Tax=Desulfovibr... [more]
UPI001AE26E858.940e-534.34flagellar hook capping protein n=1 Tax=Paenibacill... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52524contigP-wetherbeei_contig52524:2..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1236976.JCM16418_3843
Preferred nameflgD
PFAMsFlgD
Model size378
Max annot lvl91061|Bacilli
KEGG koko:K02389
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009424,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588
Exons1
Evalue3.5e-06
EggNOG OGsCOG1843@1|root,COG1843@2|Bacteria,1VF85@1239|Firmicutes,4HNQK@91061|Bacilli,26Z80@186822|Paenibacillaceae
DescriptionFlagellar hook capping protein
Cds size378
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.8134205-CDS-P-wetherbeei_contig52524:1..3791683186786.8134205-CDS-P-wetherbeei_contig52524:1..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52524 2..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52524.1.1prot_P-wetherbeei_contig52524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52524 2..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52524.1.1

>prot_P-wetherbeei_contig52524.1.1 ID=prot_P-wetherbeei_contig52524.1.1|Name=mRNA_P-wetherbeei_contig52524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
VNTVSSNPQTAGTGTTTTSTTSDANATEKQQFMTMLLQQLTHQDPLQPMS
GSDMTQQLLGIQQIQSLDTLQTQIAAMNQGNVVNASNVIGKTVSLSDPTG
GTNTTTGQVSAIRQSSDGIQVVVNGN
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mRNA from alignment at P-wetherbeei_contig52524:2..379-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52524.1.1 ID=mRNA_P-wetherbeei_contig52524.1.1|Name=mRNA_P-wetherbeei_contig52524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig52524:2..379- (Phaeothamnion wetherbeei SAG_119_79)
GTCAACACCGTCAGCAGTAACCCACAAACTGCGGGAACTGGCACTACTAC CACCTCGACTACTAGTGATGCGAACGCAACTGAGAAGCAGCAATTTATGA CGATGCTTCTACAGCAGCTGACTCACCAAGATCCACTACAGCCCATGTCG GGGTCGGATATGACCCAACAACTTCTTGGCATCCAGCAGATCCAAAGCCT GGATACCCTACAAACTCAAATCGCCGCGATGAATCAGGGTAACGTAGTTA ACGCATCCAATGTCATCGGCAAAACCGTCTCACTGAGTGACCCGACCGGC GGTACAAACACCACGACGGGTCAGGTAAGCGCCATCCGCCAGTCAAGCGA TGGCATTCAGGTAGTCGTCAATGGAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52524:2..379-

>mRNA_P-wetherbeei_contig52524.1.1 ID=mRNA_P-wetherbeei_contig52524.1.1|Name=mRNA_P-wetherbeei_contig52524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig52524:2..379- (Phaeothamnion wetherbeei SAG_119_79)
GTCAACACCGTCAGCAGTAACCCACAAACTGCGGGAACTGGCACTACTAC
CACCTCGACTACTAGTGATGCGAACGCAACTGAGAAGCAGCAATTTATGA
CGATGCTTCTACAGCAGCTGACTCACCAAGATCCACTACAGCCCATGTCG
GGGTCGGATATGACCCAACAACTTCTTGGCATCCAGCAGATCCAAAGCCT
GGATACCCTACAAACTCAAATCGCCGCGATGAATCAGGGTAACGTAGTTA
ACGCATCCAATGTCATCGGCAAAACCGTCTCACTGAGTGACCCGACCGGC
GGTACAAACACCACGACGGGTCAGGTAAGCGCCATCCGCCAGTCAAGCGA
TGGCATTCAGGTAGTCGTCAATGGAAAC
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