mRNA_P-wetherbeei_contig52488.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52488.1.1
Unique NamemRNA_P-wetherbeei_contig52488.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A495RPD9_SPHMI (DUF1214 domain-containing protein n=2 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RPD9_SPHMI)

HSP 1 Score: 175 bits (443), Expect = 9.640e-54
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 MLCRMMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNGADPKA 315
            ML  MMRWGKWLLAIVAGLA GL GAWL+V GGLGAGSAKSGPWVTSA TGSADA LRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRV G+DPKA
Sbjct:    1 MLRGMMRWGKWLLAIVAGLAAGLCGAWLSVHGGLGAGSAKSGPWVTSATTGSADAGLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVTGSDPKA 105
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BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A7W7B2B1_9SPHN (DUF1214 domain-containing protein n=1 Tax=Sphingosinicella soli TaxID=333708 RepID=A0A7W7B2B1_9SPHN)

HSP 1 Score: 160 bits (406), Expect = 4.010e-48
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 MLCRMMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNGADPKA 315
            ML  MM  G+WLLA VAG+ALGLGGAWL+VRGGLG+G+AKSGPW TSA TGSADADLRTRA VA+AGLLALSAKEA+YFNA EDSAGAPLDGRCRYRV+GADP+A
Sbjct:    1 MLRGMMGQGRWLLAGVAGVALGLGGAWLSVRGGLGSGAAKSGPWETSAFTGSADADLRTRAGVAVAGLLALSAKEAVYFNAGEDSAGAPLDGRCRYRVSGADPQA 105
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BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: UPI00159FE55B (DUF1214 domain-containing protein n=1 Tax=Parasphingopyxis algicola TaxID=2026624 RepID=UPI00159FE55B)

HSP 1 Score: 95.5 bits (236), Expect = 1.360e-22
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   40 AIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            A+V G+A+GLG  WL++R G+ A   +SGPW+TS   GSA+A  R RA VA+ GL+AL A+EAIYFNA  DS G  LDG CRYR+ G
Sbjct:   10 ALVLGIAIGLGATWLSLRAGISAFEERSGPWITSRDFGSAEAGARARAIVAVRGLMALPAREAIYFNAATDSEGRALDGGCRYRIAG 96
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BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A0M9TYN3_9SPHN (DUF1214 domain-containing protein n=2 Tax=unclassified Sphingopyxis TaxID=2614943 RepID=A0A0M9TYN3_9SPHN)

HSP 1 Score: 94.0 bits (232), Expect = 7.050e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++ + +V GLA+GLGGAW    GGLG G  ++GPW TS   G+   D  TRA VA +GLLAL AKE IY+ A+ D+AGA LDG CRY ++G
Sbjct:    1 MKSWHRYAITLVGGLAVGLGGAWALTNGGLGDGGIRNGPWTTSLGYGTKATDPLTRAMVARSGLLALPAKETIYWMAKSDAAGAALDGNCRYSLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A0N9U9D4_SPHMC (DUF1214 domain-containing protein n=3 Tax=Sphingopyxis TaxID=165697 RepID=A0A0N9U9D4_SPHMC)

HSP 1 Score: 93.6 bits (231), Expect = 9.950e-22
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++ + +V GLA+GLG AW    GGLG G  ++GPW TS   G+   D  TRA VA +GLLAL AKE +Y+ A+ D+AGAPLDG CRY ++G
Sbjct:    1 MKSWHRYAITLVGGLAVGLGAAWALTNGGLGDGGIRNGPWTTSLGYGTKATDPLTRAMVARSGLLALPAKETVYWMAKVDAAGAPLDGNCRYSLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A0P0DUA8_SPHMC (DUF1214 domain-containing protein n=7 Tax=Sphingopyxis TaxID=165697 RepID=A0A0P0DUA8_SPHMC)

HSP 1 Score: 93.6 bits (231), Expect = 9.950e-22
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++ + +V GLA+GLG AW    GGLG G  ++GPW TS   G+   D  TRA VA +GLLAL AKE +Y+ A+ D+AGAPLDG CRY ++G
Sbjct:    1 MKSWHRYAITLVGGLAVGLGAAWALTSGGLGDGGIRNGPWTTSLGYGTKATDPLTRAMVARSGLLALPAKETVYWMAKADAAGAPLDGNCRYSLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A2Z5UPS1_9SPHN (DUF1214 domain-containing protein n=3 Tax=Sphingopyxis TaxID=165697 RepID=A0A2Z5UPS1_9SPHN)

HSP 1 Score: 93.6 bits (231), Expect = 9.950e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++ +AI+ GLA+GLG AW    GGLG G+ ++GPW TS   G+   D  TRA VA +GLLAL A+E IY+ A+ D++GAPLDG CRY ++G
Sbjct:    1 MKSWHRYTIAILGGLAVGLGAAWALTNGGLGDGAIRNGPWTTSLGYGTKATDPLTRAMVARSGLLALPARETIYWMAKTDASGAPLDGNCRYSLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A246JV95_9SPHN (DUF1214 domain-containing protein n=1 Tax=Sphingopyxis bauzanensis TaxID=651663 RepID=A0A246JV95_9SPHN)

HSP 1 Score: 93.2 bits (230), Expect = 1.410e-21
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++  A+V GL +GLG AW    GGL  G+  +GPW TS   G+   D  TRA VA AGLLAL AKE +Y++A  D+AGAPLDG CRYR++G
Sbjct:    1 MKSWHRYATALVGGLTVGLGAAWALTNGGLSNGAIANGPWTTSLGFGTKATDPVTRALVARAGLLALPAKETVYWSATTDAAGAPLDGNCRYRLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: N9USF8_9SPHN (DUF1214 domain-containing protein n=8 Tax=Sphingomonadaceae TaxID=41297 RepID=N9USF8_9SPHN)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-21
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   13 MMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG 300
            M  W ++ + +V G+A+GLGGAW   RGGLG G+ ++GPW TS   G+   D  TRA VA +GLLAL AKE +Y+ A  D++GA LDG CRYR++G
Sbjct:    1 MKSWHRYAITLVGGIAVGLGGAWGLTRGGLGDGAIRNGPWTTSLGYGTKATDPLTRAMVARSGLLALPAKETLYWMARTDASGARLDGDCRYRLSG 96
[Close]
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Match: A0A3S0SIL8_9SPHN (DUF1214 domain-containing protein n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A3S0SIL8_9SPHN)

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-21
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   22 WGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVTGSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNGA 303
            W ++L+  VAG+ALGLGGA  A+R      +   GPW T    GS  AD  TRA VA+ GLLAL A+EA Y+ A  DSAGAPL+GRCRYR+ GA
Sbjct:    4 WARYLVGTVAGVALGLGGAVYALRSAALGNNVVIGPWATGQTFGSVAADPYTRAVVALKGLLALPAQEARYYTAARDSAGAPLEGRCRYRITGA 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A495RPD9_SPHMI9.640e-5490.48DUF1214 domain-containing protein n=2 Tax=Sphingos... [more]
A0A7W7B2B1_9SPHN4.010e-4882.86DUF1214 domain-containing protein n=1 Tax=Sphingos... [more]
UPI00159FE55B1.360e-2257.47DUF1214 domain-containing protein n=1 Tax=Parasphi... [more]
A0A0M9TYN3_9SPHN7.050e-2253.13DUF1214 domain-containing protein n=2 Tax=unclassi... [more]
A0A0N9U9D4_SPHMC9.950e-2252.08DUF1214 domain-containing protein n=3 Tax=Sphingop... [more]
A0A0P0DUA8_SPHMC9.950e-2252.08DUF1214 domain-containing protein n=7 Tax=Sphingop... [more]
A0A2Z5UPS1_9SPHN9.950e-2252.08DUF1214 domain-containing protein n=3 Tax=Sphingop... [more]
A0A246JV95_9SPHN1.410e-2153.13DUF1214 domain-containing protein n=1 Tax=Sphingop... [more]
N9USF8_9SPHN1.980e-2152.08DUF1214 domain-containing protein n=8 Tax=Sphingom... [more]
A0A3S0SIL8_9SPHN3.000e-2155.32DUF1214 domain-containing protein n=3 Tax=Sphingom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52488contigP-wetherbeei_contig52488:229..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1174684.EBMC1_10134
PFAMsDUF1214
Model size315
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.25e-22
EggNOG OGsCOG5402@1|root,COG5402@2|Bacteria,1N26C@1224|Proteobacteria,2TT9K@28211|Alphaproteobacteria,2K4ZE@204457|Sphingomonadales
DescriptionProtein of unknown function (DUF1214)
Cds size315
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.1941602-CDS-P-wetherbeei_contig52488:228..5431683186786.1941602-CDS-P-wetherbeei_contig52488:228..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52488 229..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52488.1.1prot_P-wetherbeei_contig52488.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52488 229..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52488.1.1

>prot_P-wetherbeei_contig52488.1.1 ID=prot_P-wetherbeei_contig52488.1.1|Name=mRNA_P-wetherbeei_contig52488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MLCRMMRWGKWLLAIVAGLALGLGGAWLAVRGGLGAGSAKSGPWVTSAVT
GSADADLRTRATVAIAGLLALSAKEAIYFNAEEDSAGAPLDGRCRYRVNG
ADPKA
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mRNA from alignment at P-wetherbeei_contig52488:229..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52488.1.1 ID=mRNA_P-wetherbeei_contig52488.1.1|Name=mRNA_P-wetherbeei_contig52488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig52488:229..543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTGCCGCATGATGCGGTGGGGTAAATGGCTGCTGGCAATCGTCGC
GGGGCTTGCGCTGGGCCTCGGCGGGGCGTGGCTTGCCGTGCGCGGTGGGC
TGGGCGCCGGGTCCGCGAAATCGGGGCCGTGGGTGACGTCCGCCGTCACC
GGCTCTGCCGATGCCGACCTGCGCACGCGCGCGACCGTTGCCATCGCCGG
GCTGCTCGCGCTCTCCGCGAAGGAAGCGATATACTTCAACGCCGAGGAGG
ACAGCGCCGGCGCGCCGCTCGATGGGCGGTGCCGCTACCGCGTGAACGGC
GCGGACCCGAAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52488:229..543+

>mRNA_P-wetherbeei_contig52488.1.1 ID=mRNA_P-wetherbeei_contig52488.1.1|Name=mRNA_P-wetherbeei_contig52488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig52488:229..543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTGCCGCATGATGCGGTGGGGTAAATGGCTGCTGGCAATCGTCGC
GGGGCTTGCGCTGGGCCTCGGCGGGGCGTGGCTTGCCGTGCGCGGTGGGC
TGGGCGCCGGGTCCGCGAAATCGGGGCCGTGGGTGACGTCCGCCGTCACC
GGCTCTGCCGATGCCGACCTGCGCACGCGCGCGACCGTTGCCATCGCCGG
GCTGCTCGCGCTCTCCGCGAAGGAAGCGATATACTTCAACGCCGAGGAGG
ACAGCGCCGGCGCGCCGCTCGATGGGCGGTGCCGCTACCGCGTGAACGGC
GCGGACCCGAAGGCG
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