mRNA_P-wetherbeei_contig5248.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5248.4.1
Unique NamemRNA_P-wetherbeei_contig5248.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A346A3V0_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A3V0_9HYPH)

HSP 1 Score: 211 bits (536), Expect = 3.720e-68
Identity = 104/115 (90.43%), Postives = 108/115 (93.91%), Query Frame = 1
Query:   67 APRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            APRMADDDRK+K   PG P  AVITKTKPQTKRPNMYRVLILNDDYTPMEFV HV+ERFFSKD+EAATRIMLHVHHHGIGECGI+TYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   22 APRMADDDRKKKG-EPGGPGTAVITKTKPQTKRPNMYRVLILNDDYTPMEFVVHVIERFFSKDHEAATRIMLHVHHHGIGECGIYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 135          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A0Q7U4C6_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=4 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A0Q7U4C6_9HYPH)

HSP 1 Score: 207 bits (527), Expect = 4.280e-67
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 1
Query:   76 MADDDRKRKSP-NPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            MADDDRKR +P  PG+P+VAVITKTKPQTKRPN+YRVLILNDDYTPMEFV HVLERFFSKD++AATRIMLHVHHHG+GECG++TYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:    1 MADDDRKRANPPTPGEPNVAVITKTKPQTKRPNLYRVLILNDDYTPMEFVVHVLERFFSKDHDAATRIMLHVHHHGMGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 113          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A1W7A111_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W7A111_9HYPH)

HSP 1 Score: 202 bits (514), Expect = 8.110e-65
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 1
Query:   61 REAPRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            R APRMADDDRK++  +PG P  +VITKTKPQTKRP+MYRVL+LNDDYTPMEFV HVLERFF+KD EAAT+IMLHVHHHGIGECGI+TYEVAETKVTQVMDFARKH HPLQCVMEKK
Sbjct:   19 RFAPRMADDDRKKRQ-DPGGPGTSVITKTKPQTKRPSMYRVLLLNDDYTPMEFVVHVLERFFNKDREAATQIMLHVHHHGIGECGIYTYEVAETKVTQVMDFARKHHHPLQCVMEKK 134          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A6N7GYU8_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GYU8_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 8.780e-63
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = 1
Query:   70 PRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            PR+A+DD KR   NPG P  AVITKTKPQTKRPN+YRVLILNDDYTPMEFV HVLERFF+KD+E+A RIM+HVH HGIGECG+FTYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   15 PRLANDDNKRAG-NPGAPGTAVITKTKPQTKRPNLYRVLILNDDYTPMEFVVHVLERFFNKDHESAYRIMMHVHEHGIGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 127          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A3S4BYN4_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A3S4BYN4_9HYPH)

HSP 1 Score: 198 bits (503), Expect = 1.020e-62
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 1
Query:   70 PRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            PR A+ DRKR+    G P  AVITKTKPQTKRPN+YRVL+LNDDYTPMEFV HVLERFF+KD EAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   52 PRAANGDRKRRQDQTG-PGTAVITKTKPQTKRPNLYRVLLLNDDYTPMEFVVHVLERFFNKDREAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 164          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A327KTP9_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KTP9_9HYPH)

HSP 1 Score: 196 bits (498), Expect = 1.240e-62
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1
Query:   70 PRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            P  A+ DRKR+  +P  P  AVITKTKPQTKRPN+YRVL+LNDDYTPMEFV HVLERFF+KD EAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:    4 PTAANGDRKRRQ-DPTGPGTAVITKTKPQTKRPNLYRVLLLNDDYTPMEFVVHVLERFFNKDREAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 116          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A1C3WCE0_9BRAD (ATP-dependent Clp protease adapter protein ClpS n=10 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1C3WCE0_9BRAD)

HSP 1 Score: 195 bits (496), Expect = 3.930e-62
Identity = 96/122 (78.69%), Postives = 109/122 (89.34%), Query Frame = 1
Query:   46 NASAAREAPRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            +A AA +APRM++DD +  S  P  PS +VITK KP+TKRPN+YRVLILNDDYTPMEFV HVLE+FF+KD EAAT+IMLHVHHHGIGECG+FTYE+AETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   11 SAPAAADAPRMSNDDNR--SGTPSGPSTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFNKDIEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 130          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A363TIQ5_9BRAD (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TIQ5_9BRAD)

HSP 1 Score: 195 bits (495), Expect = 4.600e-62
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 1
Query:   70 PRMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            PR+ DD+R+R+      P  AVITKTKPQTKRPN+YRVL+LNDDYTPMEFV HVLERFF+KD EAATRIMLHVHHHGIGECGI+TYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   13 PRLGDDERRRRGDQA--PGSAVITKTKPQTKRPNLYRVLLLNDDYTPMEFVVHVLERFFNKDREAATRIMLHVHHHGIGECGIYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 124          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A1Q4DPA2_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DPA2_9HYPH)

HSP 1 Score: 194 bits (494), Expect = 5.560e-62
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 1
Query:   76 MADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            MADDD++R++ +PG P  AVI+KT+PQ KRP++YRVLILNDDYTPMEFV HV+ERFFSKD+EAA RIMLHVH+HGIGECG++TYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:    8 MADDDKRRRNGDPGAPGTAVISKTRPQVKRPSLYRVLILNDDYTPMEFVVHVIERFFSKDHEAANRIMLHVHNHGIGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 119          
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Match: A0A6L5FS00_9HYPH (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FS00_9HYPH)

HSP 1 Score: 194 bits (494), Expect = 7.440e-62
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1
Query:   73 RMADDDRKRKSPNPGDPSVAVITKTKPQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHGIGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 411
            R+ADDDRKR+  +PG P  AVI+K KPQTKRP++YRVLILNDDYTPMEFV HVLE FF+KD E ATRIMLHVHHHGIGECGI+TYEVAETKVTQVMDFARKHQHPLQCVMEKK
Sbjct:   18 RLADDDRKRR--DPGAPGTAVISKAKPQTKRPSLYRVLILNDDYTPMEFVVHVLESFFNKDRETATRIMLHVHHHGIGECGIYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5248.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A3V0_9HYPH3.720e-6890.43ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A0Q7U4C6_9HYPH4.280e-6788.50ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A1W7A111_9HYPH8.110e-6584.62ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A6N7GYU8_9HYPH8.780e-6384.21ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A3S4BYN4_9HYPH1.020e-6285.96ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A327KTP9_9HYPH1.240e-6285.09ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A1C3WCE0_9BRAD3.930e-6278.69ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A363TIQ5_9BRAD4.600e-6283.33ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A1Q4DPA2_9HYPH5.560e-6281.25ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A6L5FS00_9HYPH7.440e-6284.07ATP-dependent Clp protease adapter protein ClpS n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5248contigP-wetherbeei_contig5248:2679..3092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1187851.A33M_2727
Preferred nameclpS
PFAMsClpS
Model size414
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06891
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.83e-62
EggNOG OGsCOG2127@1|root,COG2127@2|Bacteria,1MZU8@1224|Proteobacteria,2U982@28211|Alphaproteobacteria,3FDAX@34008|Rhodovulum
DescriptionInvolved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Cds size414
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.1073787-CDS-P-wetherbeei_contig5248:2678..30921683186786.1073787-CDS-P-wetherbeei_contig5248:2678..3092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5248 2679..3092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5248.4.1prot_P-wetherbeei_contig5248.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5248 2679..3092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5248.4.1

>prot_P-wetherbeei_contig5248.4.1 ID=prot_P-wetherbeei_contig5248.4.1|Name=mRNA_P-wetherbeei_contig5248.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MTLTARHNSSAAAGRNASAAREAPRMADDDRKRKSPNPGDPSVAVITKTK
PQTKRPNMYRVLILNDDYTPMEFVTHVLERFFSKDNEAATRIMLHVHHHG
IGECGIFTYEVAETKVTQVMDFARKHQHPLQCVMEKK*
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mRNA from alignment at P-wetherbeei_contig5248:2679..3092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5248.4.1 ID=mRNA_P-wetherbeei_contig5248.4.1|Name=mRNA_P-wetherbeei_contig5248.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig5248:2679..3092+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCTGACTGCCCGCCACAATTCATCTGCCGCCGCCGGGCGCAATGC TTCCGCAGCGCGCGAAGCGCCGCGGATGGCGGACGACGACCGCAAGCGCA AGAGCCCGAATCCGGGTGATCCGAGCGTTGCTGTCATCACCAAGACCAAG CCGCAGACCAAGCGGCCGAATATGTACCGCGTGCTGATATTGAACGACGA CTACACGCCGATGGAATTCGTCACCCACGTGCTGGAGCGCTTCTTCAGCA AGGACAATGAGGCGGCCACCCGAATCATGTTGCACGTGCATCATCACGGG ATCGGCGAATGCGGCATCTTTACGTATGAAGTTGCCGAGACAAAAGTGAC GCAGGTTATGGACTTTGCCAGAAAACATCAGCATCCTTTGCAATGCGTGA TGGAAAAAAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5248:2679..3092+

>mRNA_P-wetherbeei_contig5248.4.1 ID=mRNA_P-wetherbeei_contig5248.4.1|Name=mRNA_P-wetherbeei_contig5248.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig5248:2679..3092+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCTGACTGCCCGCCACAATTCATCTGCCGCCGCCGGGCGCAATGC
TTCCGCAGCGCGCGAAGCGCCGCGGATGGCGGACGACGACCGCAAGCGCA
AGAGCCCGAATCCGGGTGATCCGAGCGTTGCTGTCATCACCAAGACCAAG
CCGCAGACCAAGCGGCCGAATATGTACCGCGTGCTGATATTGAACGACGA
CTACACGCCGATGGAATTCGTCACCCACGTGCTGGAGCGCTTCTTCAGCA
AGGACAATGAGGCGGCCACCCGAATCATGTTGCACGTGCATCATCACGGG
ATCGGCGAATGCGGCATCTTTACGTATGAAGTTGCCGAGACAAAAGTGAC
GCAGGTTATGGACTTTGCCAGAAAACATCAGCATCCTTTGCAATGCGTGA
TGGAAAAAAAGTAG
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